BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76340.1
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476787 jgi|Araly1|476787|fgenesh2_kg.2__1917__AT1G76340.1 2098 0.0
> Ahg476787 jgi|Araly1|476787|fgenesh2_kg.2__1917__AT1G76340.1
Length=1376
Score = 2098 bits (1136), Expect = 0.0
Identities = 1299/1379 (94%), Gaps = 6/1379 (0%)
Strand=Plus/Plus
Query 200 CTTTCGTCTGTGCTTTCATTTGAAATGTCGACGAATGATGAGGAAAATGGAACTGTAATC 259
||||| ||| || |||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 1 CTTTCTTCTCTGGTTTCATTTGATATGTCGACGAACGATGAGGAAAATGGAACTTTAATC 60
Query 260 GAGGTTAAGAATGTTCCAGAACCAAGCCCAGAGACTTGGTATAGTGTTTTTCTTCGTCAA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGGTTAAGAATGTTCCAGAACCAAGCCCAGAGACTTGGTATAGTGTTTTTCTTCGTCAA 120
Query 320 GCTTCTGTCTATGGTGTAGCTGCTGGTTACTGTCTCTCAGCTTCTCTTCTCTCAATCATC 379
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 121 GCTTCGGTCTATGGTGTAGCTGCAGGGTACTGTCTCTCAGCTTCTCTGCTCTCAATCATC 180
Query 380 AACAAATGGGCAATCATGAAGTTTCCTTACCCCGGCGCATTGACCGCGATGCAGTACTTT 439
||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 181 AACAAATGGGCAATCATGAAGTTTCCTTACCCCGGTGCACTAACCGCGATGCAGTACTTT 240
Query 440 ACAAGTGCAGCTGGTGTCTTGCTTTGTGCTCAGATGAAGCTAATTGAGCATGATTCGCTT 499
||||| ||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 241 ACAAGCGCAGCTGGTGTTTTGCTCTGTGCTCAGATGCAGCTAATCGAGCATGATTCGCTT 300
Query 500 AATCTATTGACCATGTGGCGGTTTCTTCCCGCAGCTATGATATTCTACTTGTCTCTGTTT 559
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 AATCTCTTGACAATGTGGCGGTTTCTTCCCGCAGCTATGATATTCTACTTGTCTTTGTTC 360
Query 560 ACCAACAGTGAGCTTCTCCTCCACGCCAATGTCGATACTTTCATCGTGTTTCGCTCTGCT 619
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 361 ACTAACAGTGAGCTTCTCCTCCACGCCAATGTCGATACTTTCATCGTGTTTAGGTCTGCT 420
Query 620 GTTCCGATTTTCGTTGCCATTGGGGAAACGCTTTTCTTGCATCAGCCATGGCCATCTGTT 679
||||| ||||| ||||| |||||||||||||| | |||||| || |||||||| ||||||
Sbjct 421 GTTCCCATTTTTGTTGCGATTGGGGAAACGCTCTACTTGCACCAACCATGGCCGTCTGTT 480
Query 680 AAAACGTGGGGATCTTTGGCTACTATATTTGGTGGAAGTTTGCTTTACGTTTTCACGGAT 739
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 481 AAAACGTGGGGATCGTTGGCTACTATATTTGGGGGAAGTTTGCTTTACGTTTTCACAGAT 540
Query 740 TATCAGTTTACAATCGCAGCTTATAGCTGGGCTCTTGCGTATCTGGTGAGTATGACTATA 799
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACCAGTTTACAATCGCAGCGTATAGCTGGGCTCTTGCGTATCTGGTGAGTATGACTATA 600
Query 800 GACTTTGTTTACATCAAGCATGTGGTTATGACGATTGGCTTGAACACTTGGGGACTTGTT 859
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 601 GACTTTGTTTACATCAAGCATGTGGTTATGACCATTGGCTTGAACACATGGGGTCTTGTT 660
Query 860 CTCTACAATAACCTTGAGGCTCTGCTTTTGTTTCCCCTTGAGCTGCTTATAATGGGAGAG 919
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 661 CTCTACAATAACCTTGAGGCGCTGCTTTTATTTCCACTTGAGCTGCTTATAATGGGAGAG 720
Query 920 TTAAAGAAGATAAAGCATGAAATCACTGACGAGACTGATTGGTACTCGTTGCAAGTGGTT 979
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 TTAAAGAAGATAAAGCATGAAATCACTGATGAGACTGATTGGTACTCGTTGCAAGTGGTT 780
Query 980 TTACCCGTGGGTTTATCGTGTCTTTTTGGCTTGGCTATCTCTTTCTTCGGGTTCTCATGT 1039
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 TTACCTGTGGGTTTATCGTGTCTTTTCGGCTTGGCTATCTCTTTCTTCGGGTTCTCATGT 840
Query 1040 CGTC-GGGCCATTTCTGCAACGGGGTTCACCGTTCTTGGAATTGTGAACAAGCTGTTGAC 1098
|| | ||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 841 CG-CAGGGCCATTTCTGCAACGGGTTTCACTGTTCTTGGGATTGTGAACAAGCTATTGAC 899
Query 1099 AGTGGTGATCAATTTGATGGTGTGGGATAAACATTCAACGTTTGTTGGAACCTTGGGGCT 1158
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTTGTGATCAATTTGGTTGTGTGGGATAAACATTCAACGTTTGTTGGAACCTTGGGGCT 959
Query 1159 CTTGGTTTGTATGTTTGGTGGAGTCATGTATCAACAGTCTACCATCAAGAAACCGAATGC 1218
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 960 CTTGATTTGTATGTTTGGTGGAGTCATGTATCAGCAGTCTACCATGAAGAAACCAAATGC 1019
Query 1219 TA-CACAAGAAGCTAAACCGCAAGAGCAAGACGAGGAACAAGAGAAACTTCTTGAAATGC 1277
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1020 -AGCACAAGAAGCTAAACCGCAAGAGCAAGACGAGGAACAAGAGAAACTTCTAGAAATGC 1078
Query 1278 AGGAGAACAAGGAGAGTAACAGCGTCGATATAAAGGAAACTCTGAAATCAGAAGAGAAAC 1337
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1079 AGGAGAACAAGGAGAGTAACAGCATCAATATAAAGGAAACTCTGAAATCAGAAGAGAAAC 1138
Query 1338 TATGATCATAGTGGTTGGAGCTTACAGTGGCTGGAGTTTCTTCGGTACTGATACGATTTA 1397
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1139 TATGATCATAGTGGTTGGAGCTTGCAGTGGCTGGATTTTCTTCGGTACTGATATGATTTA 1198
Query 1398 GTTTCCAAGTATAGAACTACATTGTACTTAGTGGTTATGAAATTCTTTTGTATTTAGAGG 1457
|||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1199 GTTTTCAAGTAAAGAACTACATTGTACTTAGTGGTTATGCAATTCTTTTGTAACTAGAGG 1258
Query 1458 TAAGAGTACTTCGTTCCTGATCCAGTAGTTGAACAATATCGATTTCTTCTTTACATTTTG 1517
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1259 TAAGAGTACTGCGTTCCTGATCCAGTAGTTGAATAATATCGATTTCTTGTTTACATTTTG 1318
Query 1518 ATGTGTTTGGATATT-TTTCTTGTACCCGATTCAGATTTATATGCGAATGAAGAATTCT 1575
|||||||||||| || ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1319 ATGTGTTTGGAT-TTATTTCTTGTACCCGATTCAGATTTATATGCGAGTAAAGAATTCT 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59001789505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5