BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76350.1
Length=2908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476788 jgi|Araly1|476788|fgenesh2_kg.2__1918__AT1G76350.1 4082 0.0
Ahg472297 jgi|Araly1|472297|fgenesh2_kg.1__2251__AT1G20640.2 1164 0.0
> Ahg476788 jgi|Araly1|476788|fgenesh2_kg.2__1918__AT1G76350.1
Length=2758
Score = 4082 bits (2210), Expect = 0.0
Identities = 2571/2739 (94%), Gaps = 49/2739 (2%)
Strand=Plus/Plus
Query 1 AGGAACATACCCATCAAAGAGACATATCTTTACAGCTTTATTTTCCCTCAGATTTGGGGT 60
||||||||||||||| || |||| |||||||||||||| |||||||| |||||| |||
Sbjct 1 AGGAACATACCCATC-AA-AGAC--ATCTTTACAGCTTTCTTTTCCCTGAGATTT-GGG- 54
Query 61 TCTTCTTTCAACTGTTTCTCCTGTCTCTCACAAGACAAGT-GGTCTTTT--GGGAATCTT 117
| ||| || ||| ||| | || || ||||| ||| |||||||| |||||||
Sbjct 55 T-TTC--TC--CTG--TCT-C--TC-CT---AAGACTAGTGGGTCTTTTCCAAGAATCTT 100
Query 118 CAATTAAAAAGGATAAA-ACCATTTAAAACCTACTTCAAGAATCTTCCGAGAATCTGACG 176
||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 101 CAATT--------TAAACACCATTTAAAACTTACTTCAAGAATCTTCCGAGAATCTGACG 152
Query 177 TCtttttttATGTGGCTTCATTGATTTGAGTGAGCTATGGAAAACAATTCTCTTCCTATG 236
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 153 TCTTTTTTTATGTGGCTTCATTGATTTGAGTGAGCCATGGAAAACAATTCTCTTCCTATG 212
Query 237 GATCCAGCTATGGATTCTTCATTCATGGACGGATTACT-TCTAGAAGGTTGCTGGTTAGA 295
||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 213 GATCCGGCTATGGATTCTTCATTCATGGACGGATTACTAT-TAGAAGGTTGCTGGTTAGA 271
Query 296 GACAACAGATGCATCCGAGTTCCTTAATTTTAGTCCTTCAACTTCTGTAGCCCCTTTTGA 355
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 272 GACAACAGATGCATCCGAGTTCCTTAATTTTAGTCCTTCAACTTCTGTAACCCCTTTTGA 331
Query 356 TCCTTCTTCCTTCATGTGGTCTCCAACGCAAGACACATCTAATAGCTTATCTCAGATGTA 415
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TCCTTCTTCCTTCATGTGCTCTCCAACGCAAGACACATCTAATAGCTTATCTCAGATGTA 391
Query 416 TGGTCAAGATTGTCCAGAAAGATCAAGTCTTGAGGATCAAAACCAAGGGAGAGATCTCTC 475
||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 392 TGGTCAAGATTCTGCAGAAAGATCGAGTCTTGAGGATCAAAATCAAGGGAGAGATCTCTC 451
Query 476 TACCTTTAACAGACGTTGGTGGATTGGACCAAGTGGTCATCATGGCTTTTCTGTTATGGA 535
|| ||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 452 TAGCTTGAATAGACGGTGGTGGATTGGACCAAGTGGTCATCATGGCTTTTCGGTTATGGA 511
Query 536 AAGATTGGTTCAAGCAGTGACACACATTAAAGATTTCACTAGTGAGAGAGGCTCTCTTAT 595
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 512 TAGATTGGTTCAAGCAGTGACACACATTAAAGATTTCACAAGTGAGAGAGGCTCTCTTAT 571
Query 596 ACAGTTGTGGGTGCCTGTGGATAGAGGTGGTAAGCGAGTTTTGACCACAAAGGAACAACC 655
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 572 ACAGTTGTGGGTGCCTGTGGATAGAGGTGGTAAGCGAGTTTTAACCACAAAGGAACAACC 631
Query 656 TTTTAGTCATGATCCAATGTGTCAAAGGCTTGCTCATTACAGAGAGATCTCTGAGAATTA 715
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 632 TTTTAGCCATGATCCAATGTGCCAAAGGCTTGCTCATTACAGAGAGATCTCTGAGAATTA 691
Query 716 TCAGTTCTCTACTGAACAGGAGGATTCAGATTCTAGTTCCAGGGACTTGGTTGGTTTGCC 775
||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 692 TCAATTCTCTACTGAACAGGAGGATTCAGGTTCCAGTTCCAGGGACTTGGTTGGTTTGCC 751
Query 776 TGGAAGAGTTTTCTTGGGGAAGGTTCCTGAATGGACTCCTGATGTGAGGTTTTTCAAGAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TGGAAGAGTTTTCTTGGGGAAGGTTCCTGAATGGACTCCTGATGTGAGGTTTTTCAAGAA 811
Query 836 TGAGGAGTATCCGAGAGTTCAACATGCTCAAGACTGTGATGTTCGAGGCACGTTAGCTAT 895
||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 812 CGAGGAGTATCCCAGAGTACAACATGCTCAAGACTGTGATATTCGAGGCACGTTAGCTAT 871
Query 896 TCCTGTGTTTGAACAAGGTAGTCAGATTTGCTTAGGTGTTATTGAGGTTGTGATGACTAC 955
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 872 TCCTGTGTTTGAACAAGGTAGTCAGATTTGCTTAGGTGTTATTGAGGTTGTAATGACCAC 931
Query 956 ACAAATGGTTAAACTAAGTCCTGACCTTGAAAGCATCTGCAGAGCACTTCAGGCAGTTGA 1015
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 932 TCAAATGGTTAAATTAAGCCCTGACCTTGAAAGCATCTGCAGAGCACTTCAGGCTGTTGA 991
Query 1016 TCTTAGAAGCACAGAGATTCCAATACCGCCTTCTCTAAAGGGACCAGATTTCTCTTACCA 1075
|||||| |||||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 992 TCTTAGGAGCACAGAAATTCCGATACCGCCTTCTCTAAAGGGACCTGACTTCTCTTACCA 1051
Query 1076 AGCTGCATTACCTGAAATCAGAAACCTCTTGAGATGTGCTTGCGAGACGCATAAACTACC 1135
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1052 AGCTGCATTACCTGAAATCAGAAACCTCTTGAGATGTGCTTGTGAGACGCATAAACTACC 1111
Query 1136 ATTAGCTCAAACATGGGTCTCATGTCTCAAACAAAGCAAAACTGGTTGCCGTCACAATGA 1195
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1112 ATTAGCACAAACATGGGTCTCTTGTCTCAAACAAAGCAAAACCGGTTGCCGTCACAACGA 1171
Query 1196 TGAGAACTATATCCATTGTGTATCCACAATCGATGATGCTTGCTATGTTGGTGATCCTAC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1172 TGAGAACTATATCCATTGTGTATCCACAATCGATGATGCTTGCTATGTTGGTGATCCTTC 1231
Query 1256 AGTCCGTGAATTCCACGAAGCTTGCTCTGAGCACCATCTCTTGAAAGGTCAAGGAGTTGT 1315
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1232 AGTCCGTGAATTCCACGAAGCTTGCTCTGAGCATCATCTCTTGAAAGGTCAAGGAGTTGT 1291
Query 1316 TGGAGAAGCCTTTTTGACCAATGGCCCTTGCTTTTCATCTGATGTTTCTAGCTACAAGAA 1375
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1292 TGGAGAAGCCTTTTTGACCAATGGTCCTTGCTTTTCATCTGATGTTTCTAGCTACAAGAA 1351
Query 1376 ATCTGAGTACCCTCTCTCTCACCACGCGACTATGTTTGGCTTACATGGTACAGTCGCGAT 1435
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1352 ATCTGAGTACCCTCTCTCTCACCACGCAACTATGTTTGGTTTACATGGCACAGTCGCGAT 1411
Query 1436 ACGCTTACGCTGTATCCACACTGGCTCAGTTGATTTCGTCTTGGAGTTCTTTTTGCCTAA 1495
||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||
Sbjct 1412 ACGCTTACGCTGTATCCACACGGGTTCAGCTGATTTTGTCTTGGAGTTCTTTTTGCCTAA 1471
Query 1496 AAATTGTCGGGATATAGAGGAACAGAGGAAAATGTTGAATGCTCTTTCGACTATAATGGC 1555
||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1472 AAATTGTCGGGATATCGAGGAACAGAGGAAAATGTTGAATGCTCTTTCAATTATAATGGC 1531
Query 1556 GCATGTACCTAGAAGCTTAAGGACAGTCACGCAGAAGGAACTAGAAGAAGAGGGAGATTC 1615
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1532 GCACGTACCTAGAAGCTTAAGGACAGTCACGGAGAAGGAACTAGAAGAAGAGGGAGATTC 1591
Query 1616 AATGGTGAGCGAGGTCATAGAGAAAGGAGTGACATTGCCAAAGATAGAGAATACAACAGA 1675
||||||||||||||||||||||| |||||||||||||||||||| |||||||| | | ||
Sbjct 1592 AATGGTGAGCGAGGTCATAGAGAGAGGAGTGACATTGCCAAAGAGAGAGAATATATCCGA 1651
Query 1676 AGTACATCAGAGTATTAGCACTCCTCAAAATGTAGGATTAGTATTCGATGGAGGAACAAC 1735
||||| |||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 1652 AGTACCTCAGAGTATTAGTACTCCTCAAAATGTTGGAATAGTATTTGATGGAGGAACAAC 1711
Query 1736 GGAGATGGGCGAGTTAGGTTCTGAATATGGCAAAGGTGTGAGTGTGAATGAGAACAACAC 1795
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1712 AGAGATGGGCGAGTTAGGTTCTGACTATGGCAAAGGTTTGAGTGTGAATGAGAACAACAC 1771
Query 1796 TTTCTCTAGTGCTAGTGGTTTCAATAGAGTGACTGAGAAAAAGCGAACGAAGGCCGaaaa 1855
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1772 TTTCTCTAGTGCTAGTGGTTTCAATAGAGTGACTGAGAAAAAGCGAACAAAAGCCGAAAA 1831
Query 1856 aaaCATAACTTTGGATGTTCTTCGCCAATATTTCGCAGGGAGTCTCAAAGATGCTGCCAA 1915
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1832 AAACATAACTTTGGATATTCTTCGCCAGTATTTCGCAGGGAGTCTCAAAGATGCTGCCAA 1891
Query 1916 GAGTATTGGTGTTTGTCCAACGACATTGAAGAGGATATGCAGACAGCATGGGATACAGAG 1975
|| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1892 GAATATTGGCGTTTGTCCAACAACATTGAAGAGAATATGCAGACAGCATGGGATACAGAG 1951
Query 1976 ATGGCCTTCAAGAAAAATCAAGAAAGTTGGTCATTCGCTTCAGAAAATCCAAAGGGTCAT 2035
|||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1952 ATGGCCATCAAGAAAGATCAAGAAAGTTGGTCATTCGCTTCAGAAAATCCAACGGGTCAT 2011
Query 2036 CGACTCGGTTGAAGGTGTTTCGGGTCATCATCTTCCTATAGGCTCCTTCTACGCGAGTTT 2095
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 TGACTCGGTAGAAGGTGTTTCGGGTCATCATCTTCCTATAGGCTCCTTCTACGCGAGTTT 2071
Query 2096 CCCAAATCTAGCTGCTTCACCAGAAGCATCATCCCTACAACAGCAATCCAAGATTACTAC 2155
||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 2072 CCCAAATCTAGCTTCTTCACCAGAAGCATCATCCCTACAACAACAATCTAAGATGACGAC 2131
Query 2156 ATTCTTGTCC-TATTCACATTCACCACCTGCAAAGTCCCCTGGTTCCTCGTGTAGTCACA 2214
|||||| || | ||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 2132 GTTCTTG-CCTTCTTCACATTCACAACATGCAAAATCCCCTGGTTCCTCGTGTAGTCACA 2190
Query 2215 GCTCAAGCTGTTCCAGTGAAACACAAGTAATCAAGGAAGATCCCACGGATAAGACTAGAC 2274
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 2191 GCTCAAGCTGTTCCAGTGAAACGCAAGTAAACAAGGAAGATCCCACGGATAAGACTAGAC 2250
Query 2275 TAGTCTCAAGATCTTTTAAAGAAACGCAAACCACACACTTAT---CA-C--CATCATCAC 2328
|||||||| ||| ||||| |||||||||||||||||||||| || | |||||||||
Sbjct 2251 AAGTCTCAATATCCTTTAAGGAAACGCAAACCACACACTTATCACCATCAACATCATCAC 2310
Query 2329 AAGAGGATGATTTTCTGAGGGTAAAGGTAAGCTATGAGGAGGAGAAGATCCGGTTTAAGA 2388
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 2311 AAGAGGATGATTTTCTGAGGATAAAGGTAAGTTATGAGGAGGAGAAGATCCGGTTTAGGA 2370
Query 2389 TGAGAAACTCGCATAGGTTAAAAGATTTACTGTGGGAAATAGCAAAACGATTTAGTATAG 2448
|| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2371 TGCGAAACTCGCATAGGTTAAAAGATTTATTGTGGGAAATAGCGAAACGATTTAGTATAG 2430
Query 2449 AAGATGTGAGCAGATACGATCTGAAATACTTAGATGAAGACAATGAATGGGTTTTGTTGA 2508
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2431 AAGATGTGAGCAGATACGATCTGAAATACTTAGATGAAGACAATGAATGGGTTCTGTTGA 2490
Query 2509 GATGTGACGATGATGTAGAAGAGTGTGTAGATGTTTGCAGATCTTTTCCAGGACAAACGA 2568
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2491 GATGTGACGACGATGTAGATGAGTGTGTAGATGTTTGCAGATCTTTTCCAGGACAAACGA 2550
Query 2569 TTAAGCTTTTGCTTCAGCTCTCTTCTTCTTATCTTCCAGAACGTTCTTCTGTCAGTGGAT 2628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2551 TTAAGCTTTTGCTTCAGCTCTCTTCTTCTTATCTTCCAGAACGTTCTTCTGTCAGTGGAT 2610
Query 2629 GTCTTTCATGACATGAAGATTAAGAGACAA---A-GACTA--C-ATATAGTTTGTGTTGT 2681
| | |||||||||||||||| ||||||||| | || || | ||||||||||||||||
Sbjct 2611 GCCCTTCATGACATGAAGATGAAGAGACAATTTAAGAATATTCCATATAGTTTGTGTTGT 2670
Query 2682 GTAAGCATTGTTCATAGTTTTTCTTCACTATTTTCAAGA 2720
||||||||||||||||| |||||||||||||||| ||||
Sbjct 2671 GTAAGCATTGTTCATAGGTTTTCTTCACTATTTTAAAGA 2709
Score = 78.7 bits (42), Expect = 2e-13
Identities = 53/58 (91%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 2750 TTTTAAA-ACGTATCAAAGAAAGAGAAAACGTGTAAAGAGCCTTTCTTCTAGAAAAAA 2806
||||||| ||| | |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2701 TTTTAAAGACGCACCAAAGAAAGAGAGAAGGTGTAAAGAGCCTTTCTTCTAGAAAAAA 2758
> Ahg472297 jgi|Araly1|472297|fgenesh2_kg.1__2251__AT1G20640.2
Length=3005
Score = 1164 bits (630), Expect = 0.0
Identities = 1143/1380 (83%), Gaps = 78/1380 (6%)
Strand=Plus/Plus
Query 258 TTCATGGACGGATTACTTCTAGAAGGTTGCTGGTTAGAGACAACAGATGCATCCGAGTTC 317
|||||||| |||||||| ||||| ||||| ||||||||||||||||||| ||| |||||
Sbjct 294 TTCATGGATGGATTACTACTAGATGGTTGTTGGTTAGAGACAACAGATGGATCTGAGTTT 353
Query 318 CTTAATTTTAG-TCCTTCAA---CTTCTG-TAGCCCCTTTTGATCCTTCTTCCTTCATGT 372
||||| |||| |||||||| |||||| ||| |||||||||||| |||||||||||||
Sbjct 354 CTTAA-CTTAGCTCCTTCAACTTCTTCTGTTAG-CCCTTTTGATCCATCTTCCTTCATGT 411
Query 373 GGTCTCCAACGCAAG--ACA-CA----TC--TA-AT----AGCT-TATCTCAGATGTATG 417
|||||||||| |||| ||| || || || || || | |||||||||||||||
Sbjct 412 GGTCTCCAACTCAAGATACATCAGCTCTCTGTACATCGGGAGTTGTATCTCAGATGTATG 471
Query 418 GTCAAGATTGTCCAGAAAGATCAAGTCTTGAGGATCAAAACCAAGGGAGAGATCTCTCTA 477
|||| || ||| ||||||||| |||||| ||| ||| | | || |
Sbjct 472 GTCAGGACTGTGTAGAAAGATCGAGTCTT---GAT-------------GAG-T-T-TC-A 511
Query 478 CCTTTAACAGACGTTGGTGGATTGGACCAAGTGGTCATCATGGCTT-TTCTGTTA-TGGA 535
| |||| ||| ||||||||||||||| | || | ||| || |||||||| | ||
Sbjct 512 -ATGGAACAAACGATGGTGGATTGGACCAGGAGG---TGGTGG-TTCTTCTGTTACT-GA 565
Query 536 AAGATTGGTTCAAGCAG-TGACACACATTAAAGATTTCACTA-GTGAGAGAGGCTCTCTT 593
|||||||||||||||| ||| | |||||||||||| ||| | | ||||||||||| |||
Sbjct 566 GAGATTGGTTCAAGCAGTTGA-ATACATTAAAGATTACACAACG-GAGAGAGGCTCGCTT 623
Query 594 ATACAGTTGTGGGTGCCTGTGGATAGAGGTGGTAAGCGAGTTTTGACCACAAAGGAACAA 653
|| ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 624 ATTCAGTTATGGGTTCCGGTTAATAGAGGTGGTAAGCGAGTTTTGACCACAAAGGAACAA 683
Query 654 CCTTTTAGTCATGATCCAATGTGTCAAAGGCTTGCTCATTACAGAGAGATCTCTGAGAAT 713
|||||||| |||||||| |||||||||| ||||| | || ||||||||||||| |||
Sbjct 684 CCTTTTAGCCATGATCCGTTGTGTCAAAGACTTGCAAACTATAGAGAGATCTCTGTGAAA 743
Query 714 TATCAGTTCTCTACTGAACAGGAGGATTCAGATTCTAGTTCCAGGGACTTGGTTGGTTTG 773
|||||||||||| |||| || | || | ||||| | | || ||| | |||||||
Sbjct 744 TATCAGTTCTCTGCTGAGCA--A-GA-T--GATTC-A-----AAGGCCTTAGCTGGTTTG 791
Query 774 CCTGGAAGAGTTTTCTTGGGGAAGGTTCCTGAATGGACTCCTGATGTGAGGTTTTTCAAG 833
|||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 792 CCTGGAAGGGTTTTCTTGGGGAAGCTTCCTGAATGGACTCCTGATGTTAGGTTTTTCAAG 851
Query 834 AATGAGGAGTATCCGAGAGTTCAACATGCTCAAGACTGTGATGTTCGAGGCACGTTAGCT 893
| ||||||||||||||||| || || ||||| ||||| | ||| || || ||| | ||
Sbjct 852 AGCGAGGAGTATCCGAGAGTACACCACGCTCAGGACTGCGGTGTCCGTGGAACGCTGGCG 911
Query 894 ATTCCTGTGTTTGAACAAGGTAGTCAGATTTGCTTAGGTGTTATTGAGGTTGTGATGACT 953
||||| |||||||||||||||||| | ||||| || ||||||||||||||||| |||||
Sbjct 912 ATTCCGGTGTTTGAACAAGGTAGTAATATTTGTTTGGGTGTTATTGAGGTTGTAATGACC 971
Query 954 ACACAAATGGTTAAACTAAGTCCTGACCTTGAAAGCATCTGCAGAGCACTTCAGGCAGTT 1013
|| | |||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 972 ACTGAGATGGTTAAACTAAGACCTGAGCTTGAAAGCATTTGCAGAGCACTTCAGGCAGTT 1031
Query 1014 GATCTTAGAAGCACAGAGA-TTCCAATACCGCCTTCTCTAAAGGGACCAGATTTCTCTTA 1072
|||||||| ||||| || | |||| || |||||| ||||||||||| || || || ||
Sbjct 1032 GATCTTAGGAGCACCGA-ATTTCCGATTCCGCCTACTCTAAAGGGATGTGACTTATCCTA 1090
Query 1073 CCAAGCTGCATTACCTGAAATCAGAAACCTCTTGAGATGTGCTTGCGAGACGCATAAACT 1132
| |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 1091 CAAAGCTGCATTACCTGAAATCCGAAACCTCTTGAGATGTGCTTGTGAGACTCATAAACT 1150
Query 1133 ACCATTAGCTCAAACATGGGTCTCATGTCTCA-AACAAAGCAAAA-CTGGTTGCCGTCAC 1190
||| |||||||| ||||||||||| |||| | |||||| ||||| | || |||||||||
Sbjct 1151 ACCTTTAGCTCAGACATGGGTCTCTTGTC-AACAACAAAACAAAAGC-GGGTGCCGTCAC 1208
Query 1191 AATGATGAGAACTATATCCATTGTGTATCCACAATCGATGATGCTTGCTATGTTGGTGAT 1250
|| ||||||||||| |||||||| ||||| || || |||||||||||||| |||||||||
Sbjct 1209 AACGATGAGAACTACATCCATTGCGTATCAACCATTGATGATGCTTGCTACGTTGGTGAT 1268
Query 1251 CCTACAGTCCGTGAATTCCACGAAGCTTGCTCTGAGCACCATCTCTTGAAAGGTCAAGGA 1310
|| ||||| || || ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1269 CCAACAGTTCGCGAGTTCCACGAAGCTTGCTCTGAGCATCACCTCTTGAAAGGCCAAGGA 1328
Query 1311 GTTGTTGGAGAAGCCTTTTTGACCAATGGCCCTTGCTTTTCATCTGATGTTTCTAGCTAC 1370
|||| || ||||||| ||||||||||| ||||||||||| |||||||| |||| ||||
Sbjct 1329 GTTGCAGGTCAAGCCTTCTTGACCAATGGACCTTGCTTTTCGTCTGATGTATCTAACTAC 1388
Query 1371 AAGAAATCTGAGTACCCTCTCTCTCACCACGCGACTATGTT-TGGCTTACATGGTACAGT 1429
|||||||| |||||||||||||||||||| || | ||| || || |||||||| | ||
Sbjct 1389 AAGAAATCAGAGTACCCTCTCTCTCACCATGCTAATAT-TTACGGTTTACATGGCGCGGT 1447
Query 1430 CGCGATACGCTTACGCTGTATCCACACTGGCTCAGTTGATTTCGTCTTGGAGTTCTTTTT 1489
|| || ||| | ||||| |||||||| ||||| | |||||||||||| |||||||||||
Sbjct 1448 TGCAATTCGCCTGCGCTGCATCCACACGGGCTCTGCTGATTTCGTCTTAGAGTTCTTTTT 1507
Query 1490 GCCTAAAAATTGTCG-GGATATAGAGGAACAGAGGAAAATGTTGAATGCTCTTTCGACTA 1548
||| ||| | || || ||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 1508 GCCCAAAGACTG-CGATGATCTGGAGGAACAGAGGAAAATGTTGAATGCTCTTTCAACTA 1566
Query 1549 TAATGGCGCATGTACCTAGAAGCTTAAGGACAGTCAC-GCAGAAGGAACTAGAAGAAGAG 1607
| ||||| ||||| ||||||||||||||||| || || | | || |||||||||||||||
Sbjct 1567 TTATGGCTCATGTGCCTAGAAGCTTAAGGACTGTTACAG-ATAAAGAACTAGAAGAAGAG 1625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109776086090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5