BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76370.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909257 jgi|Araly1|909257|Al_scaffold_0002_2338 1829 0.0
> Ahg909257 jgi|Araly1|909257|Al_scaffold_0002_2338
Length=1146
Score = 1829 bits (990), Expect = 0.0
Identities = 1096/1148 (95%), Gaps = 4/1148 (0%)
Strand=Plus/Plus
Query 246 ATGAGGTGTTTCTCTTGTCTCAACACGCAAACTAATGACATGAGAATCAACATTGATACC 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTGTTTCTCTTGTCTCAACACGCAAACTAATGACATGAGAATCAACATTGATACC 60
Query 306 CTCTCCGACCTAACCGATTATGCCTCAGTTGCCACAA-AAATCGATCCAAGAGGAACAGG 364
||||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||
Sbjct 61 CTCTCCGACCTAACCGATTATTCCTCAGTTGCCACAAGAAA-CGATCCAAGAGGGACAGG 119
Query 365 CTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCTAAACCGGGTGGTGGCGC 424
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 GTCAAAATCTGGCATTTTAGTTAATGGGAAAGTGAATAGCCCTAAACCGGGAGGTGGCGC 179
Query 425 ACGGAGTTTCACGTTCAAGGAGTTAGCAGCCGCCACGAAGAATTTCCGGGAGGGGAATAT 484
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 180 TCGGAGTTTCACGTTCAAGGAGTTAGCCGCCGCCACCAAGAATTTCCGGGAGGTGAATAT 239
Query 485 TATAGGAAAAGGAGGCTTTGGGAGTGTCTACAAGGGACGTTTAGATTCAGGACAAGTGGT 544
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GATTGGAAAAGGAGGCTTTGGGAGTGTATACAAGGGACGTTTAGATTCAGGACAAGTGGT 299
Query 545 GGCGATCAAGCAATTAAATCCAGATGGACATCAAGGAAATCAAGAATTCATAGTTGAAGT 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 300 GGCGATCAAGCAATTAAATCCAGATGGGCATCAAGGAAATCAAGAATTCATAGTTGAGGT 359
Query 605 CTGTATGCTTAGCGTCTTCCATCATCCAAATCTAGTAACTTTAATCGGTTACTGTACTTC 664
||| |||||||||||||| |||||||||||||| |||||| ||||||||||||| |||||
Sbjct 360 CTGCATGCTTAGCGTCTTTCATCATCCAAATCTTGTAACTCTAATCGGTTACTGCACTTC 419
Query 665 TGGTGCTCAGAGACTTCTT-GTTTATGAATACATGCCAATGGGTAGCTTAGAAGATCATC 723
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGTGCTCAGAGACTT-TTGGTTTATGAATACATGCCAATGGGTAGCTTAGAAGATCATC 478
Query 724 TTTTTGATCTTGAGCCTGATCAGACTCCACTAAGCTGGTATACTCGGATGAAAATCGCGG 783
||| |||||||||||||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 479 TTTATGATCTTGAGCCTGATCAGATTCCGCTAAGCTGGTATACCCGAATGAAAATCGCGG 538
Query 784 TTGGTGCAGCTCGTGGGATAGAGTATCTCCACTGTAAAATAAGCCCGTCTGTGATTTACC 843
||||||| ||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct 539 TTGGTGCTGCTCGTGGGATTGAGTATCTTCATTGTAAAATAAGCCCATCTGTGATTTACC 598
Query 844 GTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAATTTAGCGTCAAGCTCTCTGATT 903
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 599 GTGATTTGAAATCCGCAAACATTTTGTTAGATAAAGAATTTAGCGTCAAACTCTCTGACT 658
Query 904 TTGGACTCGCTAAGGTTGGTCCTGTGGGGAACCGGACACATGTGTCGACTCGAGTCATGG 963
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TTGGACTCGCCAAGGTCGGTCCTGTGGGGAACCGGACACATGTGTCCACTCGAGTCATGG 718
Query 964 GTACTTACGGATACTGTGCTCCAGAATACGCAATGAGCGGAAGATTGACTATAAAATCGG 1023
|||||||||||||||||||||||||||| ||||||||||||||||| || || || ||||
Sbjct 719 GTACTTACGGATACTGTGCTCCAGAATATGCAATGAGCGGAAGATTAACCATTAAGTCGG 778
Query 1024 ATATCTATAGCTTTGGTGTAGTGTTGCTTGAGCTTATTTCTGGCAGGAAGGCCATTGATT 1083
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 779 ATATCTATAGCTTCGGTGTAGTGTTGCTTGAACTGATTTCTGGCAGGAAGGCCATTGATT 838
Query 1084 TGAGTAAACCAAACGGAGAGCAGTACCTTGTTGCTTGGGCTAGACCGTATCTCAAAGATC 1143
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 839 TGAGTAAACCAAACGGAGAGCAGTACCTTGTTGCTTGGGCTCGACCGTATCTCAAGGATC 898
Query 1144 CTAAGAAATTTGGACTTCTAGTTGACCCGTTGCTACGGGGAAAGTTCTCGAAGAGGTGTC 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CTAAGAAATTTGGACTTCTAGTTGACCCGTTGCTACGGGGAAAGTTCTCGAAGAGGTGTC 958
Query 1204 TTAACTACGCGATTTCTATAACCGAGATGTGCCTAAACGACGAAGCGAATCACCGGCCAA 1263
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 TTAACTACGCGATTGCTATAACCGAGATGTGCCTAAATGACGAAGCGAATCACCGGCCAA 1018
Query 1264 AAATAGGAGATGTGGTGGTGGCATTTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAG 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAATAGGAGATGTGGTGGTGGCATTTGAGTACATAGCCTCTCAGAGCAAATCTTATGAAG 1078
Query 1324 ATCGAAGAACGGCTCGCAAGTCTACGGACTCTAACCGGTTAAGACGGGAAACAAAACAGA 1383
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 ATCGAAGAGCGGCTCGCAAGTCTACGGACTCTAACCGGTTAAGAGGGGAAACAAAACAGA 1138
Query 1384 GTTATTAA 1391
|||| |||
Sbjct 1139 GTTACTAA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5