BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76380.2
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476793 jgi|Araly1|476793|fgenesh2_kg.2__1923__AT1G76380.2 2575 0.0
> Ahg476793 jgi|Araly1|476793|fgenesh2_kg.2__1923__AT1G76380.2
Length=1906
Score = 2575 bits (1394), Expect = 0.0
Identities = 1751/1914 (91%), Gaps = 62/1914 (3%)
Strand=Plus/Plus
Query 19 agagagacaagagaagagagagaATGGGTGAGGTAGCTG---ATAATAATACATTGATGA 75
||||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 8 AGAGAGA-GAGAGGAGAGAGAGAATGGGAGAGGTAGCTGATAATAATAATACATTGATGA 66
Query 76 AGAGGAAGAAGAAAGGTAGGCCATCACTTCTTGACCTCCAAAAGCGAGCTCTCAAACAGC 135
||| |||||||||||||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 67 AGAAGAAGAAGAAAGGTAGGCCTTCTCTACTTGACCTCCAGAAGCGAGCTCTCAAACAGC 126
Query 136 AACAATTGCTTCAGAGAAGAAATCCCAATGAAGAAAACGAAGAAGAGCTTAGATCCAGTT 195
|||||||||| ||||||||||| ||| |||||| || |||||||||||||||||| |||
Sbjct 127 AACAATTGCTCCAGAGAAGAAAGCCCGATGAAG--AA-GAAGAAGAGCTTAGATCCGGTT 183
Query 196 CCAGAAACCCTAATTTCAGCAACCGATCAAATCGCCGGAGGAATTCAAATTCTGAAGACG 255
|||||||||||||| | || |||||||||||||| || ||||| |||||||| ||||
Sbjct 184 TCAGAAACCCTAATTCCGGCGCCCGATCAAATCGCC-GA--AATTCGAATTCTGACGACG 240
Query 256 ACGACGATGAGAGGAGAGACAAAAAGCATCGGCTTTTACACGGATTGAATTCACACGAGG 315
|||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 ACGATGATGAGCGGAGAGACAAAAAGCATCGGCTTTTGCACGGATTGAATTCACACGACC 300
Query 316 GTCGTGATTCTTCTAATTCCAAATCTGGCGGCGGCGATTTGGACTCCGATGC-ACGCA-A 373
||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
Sbjct 301 GTCGTGATTCTTCTAATTCCAAATCTGTCGGCGGCGATTTGGACTCCGATGCTA-TCAGA 359
Query 374 CCGCCGGAAAATTGACGGATCTGACAATACGGGAGAAAAGGCTTCGAAAGCGACAGACAT 433
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 -CGCCGGAAAATTGACGGATCTGACGATACGGGAGAAAAGGCTTCGAAAGCGACAGACAT 418
Query 434 TCTTCTTCAAAGAGGGTCACTTGTGGAGTCTACACCTTTGCCAGACAAAAAGTTGTTGTT 493
||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 419 TCTTC--C-AAGAGGGTCACTTGTGGAGTCTACACCTTTGCCAGACAAAAAGTTGCTCTT 475
Query 494 CTTCATTCTTGATAGAGTTCAAAAGAAGGATACTTATGGAGTGTACTCTGATCCAGCTGA 553
||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 476 GTTCATCCTTGATAGAGTTCAAAAGAAGGATACATATGGAGTGTACTCTGACCCTGCTGA 535
Query 554 TCCAGAGGAGCTTCCTGATTATTATGAGATTATCAAGAATCCGATGGATTTCACCACATT 613
||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct 536 TCCAGAGGAGCTTCCTGATTATTATGATATTATCAAGAATCCCATGGATTTCAGCACATT 595
Query 614 GCGGAAGAAATTAGAATCCGGGGCATACACCACCTTAGAACAATTT---G--AG----CA 664
|||||||||||||||||||||||||||||| ||||||||||||||| | || ||
Sbjct 596 GCGGAAGAAATTAGAATCCGGGGCATACACTACCTTAGAACAATTTGAGGCAAGTCTTCA 655
Query 665 AGACGTATTTTTAATATGTACGAATGCGATGGAGTACAATTCAGCAGATACAGTATACTA 724
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 656 AGACGTATTTTTAATATGCACGAATGCGATGGAATACAATTCAGCAGATACAGTATACTT 715
Query 725 CCGACAGGCAAGAGCTATGCTTGAGTTGGCGAAAAAGGACTTTGGAAATTTGAGACAAGA 784
| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 716 CAGACAGGCACGAGCCATGCTTGAGTTGGCTAAAAAGGACTTTGGAAATTTGAGACAAGA 775
Query 785 AAGTGATGGAGAAGAACCAGTGTCACTGTCACAACAGCCGAAAGTAGTCAAAAGAGGCCG 844
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 776 AAGTGATGGAGAAGAACCAGTGTCACTTTCACAACAGCCTAAAGTAGTCAAAAGAGGCCG 835
Query 845 TCCTCCAGGCTCAGGCCTTAAGAAACAGCTTGAGCAATCTTTGATTGATCGCACGACTTC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TCCTCCAGGCTCAGGCCTTAAGAAACAGCTTGAGCAATCTTTGATTGATCGCACGACTTC 895
Query 905 TGATATTTCTGCTGATGCAGCAGCATTCACTTATGCTGGAGATAGCTCTAGATTATCCGG 964
|||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 896 TGATATATCAGCTGATGCAGCAGCACTCACTTATGCTGGAGATAGCTCTAGATTATCCGG 955
Query 965 TTCTTACAATCTAAGAAAAAATCCTCCTTCATATGGATTCCGTCATGCAGAAACTTCGGT 1024
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 956 TTCTTACAATCTAAGAAAAAATCCTCCTTCTTATGGATTCCGTCAAGCAGAAACTTCGGT 1015
Query 1025 TAGAATCAACCATAATAGCGAGAACCAAAGTGGCTTGTTGATAGATTGGGAGAAGGAGTT 1084
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 TAGAATCAACCATAGTAGCGAGAACCAAAGTGGCTTGATGATAGATTGGGAGAAGGAGTT 1075
Query 1085 TCCACCTTCTGTTGTGAAGGCTGTCAATAAATACGGGATGAAAAATGTCGACGAGAACAG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCCACCTTCTGTTGTGAAGGCTGTCAATAAATACGGGATGAAAAATGTCGACGAGAACAG 1135
Query 1145 GCGAGATACCTACAACCAGAACTCTGCTTCCTTGCAAGATTCTTCGATTTTTACACTGCT 1204
||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||
Sbjct 1136 GCGAGATACCTACAACCAGAACTCTACTTCCTTGCAAGAATCTACGATTTTTACAATGCT 1195
Query 1205 TGATGATAATTTAAAACAATTAACTCCAGTTGGACTGAAAGCTGAATATGGGTATGCTAG 1264
||| ||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1196 TGAAGATGATTTAAAACAGTTAACTCCAGTTGGTTTGAAAACTGAATATGGGTATGCTAA 1255
Query 1265 GAGTCTAGCACGGTATGCAGCAAATATTGGTCCTGTTGCTTGGACATTTGCCAATGTAAG 1324
||||||||| || |||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 1256 GAGTCTAGCGCGATATGCAGCAAATCTTGGTCCTGTTGCTTGGAGATTTGCCAATGCAAG 1315
Query 1325 GATTGAAAAACTGTTACCAACTGGAACCGAATTTGGTCCCGGGTGGGTTGGAGAGAACCC 1384
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GATTGAAAAATTGTTACCAACTGGAACCGAATTTGGTCCCGGGTGGGTTGGAGAGAACCC 1375
Query 1385 ---------T---GAGAATCCTCCTCAACAGCAAAACTTAATGTCGGGAAAGCAAAAGTG 1432
| |||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1376 AGAAGCGCCTCCTGAGAATCCTCCTCAACAGCAAAACGTAATGTCGGGAAAGCAGAAGTG 1435
Query 1433 TTCGAATGACTATGCATCTGATGATCATCATCAGTCAAGTAGAATCATGTCTCC-ATCAA 1491
||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| | |||
Sbjct 1436 TTCGAATGACTTTGCGTCTGATGATCATCACCAGTCAAGCAGAATCATGTCTCCGA-CAA 1494
Query 1492 CCTCTGTCTCAAGCTCCATCATAGGAAACATACATTCTTCCCATGAAAGCAAAGAGTCTG 1551
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1495 CCTCTGTCTCAAGCTCCATCATAGGAAACAGACATTCTTCCCATGAAAGCAAAGAGTCTG 1554
Query 1552 TTC-A---G-----GTATTGAATCAAGAAACCGAGATAAATGGTCTAGTCCGTGGTTCCA 1602
| | | | |||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1555 TGCCAACTGCTCACGTATTGAATCAAGAAACCGAGAGCAATGGTCTAGTCCGTGCTTCCA 1614
Query 1603 GCGGATTTAACCATAA-ACCAAACCAGATGCTGGAAACAGCTGGCTCGCAGCAAGGC--- 1658
||||||||||||| | || ||||||||||||||||||||||| ||||| ||||||
Sbjct 1615 GCGGATTTAACCA-ACCACAAAACCAGATGCTGGAAACAGCTGTTTCGCAACAAGGCTTG 1673
Query 1659 ------AACATAAAACAGGAATTTCAGCGGTTGCCACCAGATCTCAATGCTAGGCTT-TC 1711
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||
Sbjct 1674 TTTCCGAACATAAAACAGGAATTTCAGCAGTTGCCACCGGATCTGAATGCTAGGCTTGTC 1733
Query 1712 CTCACCAAACTCACCAGGCTCTAACCACCAGGCAGGTTCATCGCAGCATCCGGATTTGGC 1771
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1734 -TCACCAAACTCACCGGGCTCGAACCACCAGGCAGGTTCATCGCAGCATCCGGATTTAGC 1792
Query 1772 GTTACAACTCTAAGTAATTCCTACTAATATTGAAAGCCTTACCGATATATGAGGGAGAAG 1831
||||||||||||||| || ||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 1793 ATTACAACTCTAAGTACTTTCTACTAAAATTGAAAGCTTTACCGATATAGGAGGGAGAAG 1852
Query 1832 AAGAGGCAAAGGCATGTGATTCTTGCTACAAGGTTGAATATATAGGGAAAGTCT 1885
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1853 AAGAGGCAGAGGCATGTGATTCTTGGTACAAGGTTGAATATATAGGGAAAGTCT 1906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5