BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76390.1
Length=2856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476794 jgi|Araly1|476794|fgenesh2_kg.2__1924__AT1G76390.2 4303 0.0
Ahg921044 jgi|Araly1|921044|scaffold_102325.1 1729 0.0
Ahg476796 jgi|Araly1|476796|fgenesh2_kg.2__1926__AT1G76400.1 226 8e-58
> Ahg476794 jgi|Araly1|476794|fgenesh2_kg.2__1924__AT1G76390.2
Length=2858
Score = 4303 bits (2330), Expect = 0.0
Identities = 2690/2864 (94%), Gaps = 23/2864 (1%)
Strand=Plus/Plus
Query 1 CCTCCGGTCTC-GATTCAGGCACAAAAATATCTCTGGCGGATTCATACTTGACTACACCG 59
||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||| |
Sbjct 10 CCTCCGGTCTCAAATTCAGG--CAAAAATATCTCTTTCGGATTCATACTTGA-GACA-AG 65
Query 60 ATGTTGTGTTACATGGAT-TTG-ACTCGATTTCACCCGTTTTCTTTTCAAAGGTTTTGAA 117
| | | | ||| ||| ||| ||||||| || |||||||| ||||||| ||| |||
Sbjct 66 A-G-T-AGAAACACCGATGTTGTGTTCGATTTAACACGTTTTCTATTCAAAGATTTGGAA 122
Query 118 TTTAACCAGAGATCGTTCTCAATTTCTCAAGCTAGCAGAAGAAGAAGCTAAAGACCTTTG 177
||||| ||||||||||||||||| ||||||||||| |||||| |||||||| | |||||
Sbjct 123 TTTAATCAGAGATCGTTCTCAATCTCTCAAGCTAGAAGAAGACGAAGCTAAGGTTCTTTG 182
Query 178 TTCTTGG-TTAAG-ACAGCTTCTTCAGGGCTTCTTTTGTTTTGAACTGAAGAATCAATTC 235
||||||| || | ||| ||| |||||||||||| ||||||||||| ||||||||||
Sbjct 183 TTCTTGGCTT--GCTCAGTTTCCTCAGGGCTTCTTGTGTTTTGAACT---GAATCAATTC 237
Query 236 ATCAGATGGCTGGAAGTGGAAGTTGGGATGGAAGCCAATCGGATAACAGCTCACAATTCG 295
|||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 238 ATCATATGGCCGGAAGTGGAAGTTGGGATGGAAGCCAATCAGAAAATAGCTCACAATTCG 297
Query 296 AGCCAGGGATTGATAACATATACGAAGCTTTTATCTGTCCATTGACAAAGCAAGTTATGC 355
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 298 AGCCAGGGATTGATAATATATACGAAGCTTTTATCTGTCCATTGACTAAGCAAGTTATGC 357
Query 356 ATAATCCTGTCACTTTAGAGAATGGTCAGACATTTGAGCGTGAAGCTATTGAGAAATGGT 415
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 ATAATCCTGTGACTTTAGAGAATGGTCAGACATTTGAGCGTGATGCTATTGAGAAATGGT 417
Query 416 TTCAAGAATGTCGTGAAAACGGTCAACCTCTATCTTGTCCTATAACTTCTAAGGAGTTGA 475
| ||||||||||| |||||| |||||||||||||||||||||||||||| ||| || |||
Sbjct 418 TCCAAGAATGTCGCGAAAACTGTCAACCTCTATCTTGTCCTATAACTTCCAAGCAGCTGA 477
Query 476 GTATCACTGATCTAAGTCCAAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCAA 535
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 478 GTATCACTGATCTAAGCCCGAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCTA 537
Query 536 GGAATGATGCTTTGAAGCTTGATATTGCTCGTCAGTCACTTTATTTGGGAAATGCTGAGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGAATGATGCTTTGAAGCTTGATATTGCTCGTCAGTCACTTTATTTGGGAAATGCTGAGA 597
Query 596 CTAATATTTTGCTGGCTTTGAAGAATGTCAGAGAGATTTGTAGGAATATACGTAAAATTA 655
||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| |||
Sbjct 598 CTAATATTTTGCTAGCTTTGAAGAATGTCCGAGAGATTTGCAGGAACATACGTAAACTTA 657
Query 656 GGCAACGTGTGTGCAATCCTCAGCTTGTTCGGTTGATTACCGATATGCTAAAGAGTAGTA 715
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 658 GGCAACGTGTGCGCAATCCTCAGCTTGTTCGGTTGATTACCGACATGCTAAAAAGTAGTA 717
Query 716 GTCATGAAGTGCGGTGTAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAG 775
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTCATGAAGTGCGGTATAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAG 777
Query 776 AGAGCAAGGCAATAGTAGCTGAAGGAGACACTGTGCGTACTATAGTTAAGTTCTTGTCTC 835
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 778 AGAGCAAGGCAATAGTAGCTGAAGGAGACACCGTGCGTACTATAGTTAAGTTCTTGTCCC 837
Query 836 AAGAGCCATCAAAGGGGAGGGAAGCAGCTGTTTCCGTGTTGTTTGAGCTCTCTAAATCTG 895
|||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||| |
Sbjct 838 AAGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCGTGATGTTCGAGCTCTCCAAATCCG 897
Query 896 AAGCATTATGCGAGAAGATTGGATCAATCCATGGAGCAATCATCTTATTGGTTGGTCTGA 955
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 898 AAGCATTATGCGAGAAGATTGGATCAATCCGTGGAGCAATCATCTTATTGGTTGGTCTGA 957
Query 956 CAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATAAAACTTTGACAAATT 1015
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 958 CAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATCAAACTTTGACAAACT 1017
Query 1016 TGGAGAGGTCAGAGGAAAATGTTCGACAGATGGCTATCAATGGTAGACTGCAGCCTCTTC 1075
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1018 TGGAGAGATCAGAGGAAAATGTTCGACAGATGGCTACCAATGGTAGACTGCAGCCTCTGC 1077
Query 1076 TTGCTAAACTTCTTGAAGGTTCACCGGAAACAAAAGTTTCCATGGCTTTCTATCTTGGGG 1135
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1078 TTGCTAAACTTCTTGAAGGTTCACCTGAAACAAAAGTCTCCATGGCTTTCTATCTTGGGG 1137
Query 1136 TTCTTGCTTTAAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTA 1195
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTCTTGCCTTGAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTA 1197
Query 1196 TCGATCTTATGAGAACTCGCGACATGAGCCAACGGGAAGCTGCTTTGGGAGCTCTTAACA 1255
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1198 TCGATCTTATGAGAACTCGCGACATGCGTCAACGGGAAGCTGCTTTGGGAGCTCTTAACA 1257
Query 1256 ACATCTCATCCTTTGAAGGGAGTGCTAAACTCTTAATCAACACCGGAATTCTCCCACCGC 1315
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1258 ACATCTCATCGTTTGAAGGGAGTGCCAAAGTCTTAATCAACACCGGAATTCTCCCACCGC 1317
Query 1316 TTATCAAAGACTTGTTCTATGTTGGGCCAAACCAGCTTCCAATCCGACTTAAAGAAGTCT 1375
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1318 TTATCAAAGACTTGTTCTATGTTGGGCCAAACCAGCTTCCAATTCGACTTAAAGAAGTCT 1377
Query 1376 CTGCAACTATTCTTGCCAATATAGTGAACATTGGGTACGACTTCGACAAAGTTCCTGTTG 1435
| || || |||||||| ||||||||||||||||| || || || ||||||||||||||||
Sbjct 1378 CCGCCACCATTCTTGCTAATATAGTGAACATTGGCTATGAATTTGACAAAGTTCCTGTTG 1437
Query 1436 GACCTCATCACCAAACTCTTGTTTCAGAGGAAATAGTGGAGAACCTTCTCCAACTAACAA 1495
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1438 GACCTGATCACCAAACTCTTGTTTCAGAGGAAATAGTGGAGAACCTACTCCAACTAACTA 1497
Query 1496 GCAACACTGGTCCAGAAATCCAAGGAAAGCTGTTGGCGGTTCTTGTTGGACTCACTAGCT 1555
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 1498 GCAACACGGGTCCAGAAATCCAGGGAAAGTTGTTGGCGGTTCTTGTTGGACTCACGAGCT 1557
Query 1556 GTCCAAACTCGGTTATTAATGTTGTTTCTGCCATCAGAAACTCAGCTGCCATCATAAGCT 1615
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1558 GTCCAAACTCGGTTATTAATGTTGTTTCTGCGATCAGAAACTCAGCTGCCATCATTAGCT 1617
Query 1616 TGGTTCAGTTTGTTGAGATACATGAGAACGATGATTTGCGGTTAGCTTCTATCAAGCTTC 1675
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1618 TGGTTCAGTTTGTTGAGATTCATGAGAACGATGATTTGCGTTTAGCTTCTATCAAGCTAC 1677
Query 1676 TTCATAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGCGTTGCGTAGCACTGTTG 1735
|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1678 TTCACAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGTGTTGCGTGGCACTGTTG 1737
Query 1736 GACAGCTCGGAAGCCTTGTTTCGATCATATCAGAGAATACACCAACAATCACTGAGGAAC 1795
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1738 GACAGCTCGGAAACCTTGTTGCGATCATATCAGAGAATACAACAACAATCACTGAGGAAC 1797
Query 1796 AAGCTGCAGCTGCTGGACTTTTAGCTGAACTTCCTGAGAGAGATTTGGTTCTGACAATGA 1855
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1798 AAGCTGCAGCTGCTGGACTTTTAGCTGAACTTCCTGAGAGAGATTTGGGTCTCACAATGA 1857
Query 1856 GATTGTTAAGAGAAGGTGCTTTTGAGAAAATCATCTCCAAGATAGTTGGTATTCGCCAAG 1915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GATTGTTAAGAGAAGGTGCTTTTGAGAAAATCATCTCCAAGATAGTTGGTATTCGCCAAG 1917
Query 1916 GAGAAATCAGAGGAATCCGGTTCGAGAGAACATTTCTCGAAGGACTTGTTAGTATTCTCG 1975
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GAGAAATTAGGGGAATCCGGTTCGAGAGAACATTTCTCGAAGGACTTGTTAGTATTCTCG 1977
Query 1976 CTCGGATCACCTTCGCACTCACCAAGGAGACTGACGCCACTTT-GTTCTGCTGTGAGAAA 2034
|||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||
Sbjct 1978 CTCGGATCACCTTCGCACTCACCAAGGAGACTCATGCCG-TTTCGTTCTGCTGTGAGAAC 2036
Query 2035 AATCTTCCTTCACTTTTCCTTGATCTCCTTCAATCCAACAGTCAAGATAACATCCAGAGG 2094
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 2037 AATCTTACTTCACTTTTCCTGGATCTTCTTCAATCCAACAGTCAAGATAACATCCAGATG 2096
Query 2095 GCTTCTGCAACAGCATTGGAGAATCTTTCACTTGAATCCAAAAATCTTACAAAGATACCT 2154
|||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2097 GCTTCTGCAATAGCATTGGAGAATCTTTCACTTGAATCCAAGAATCATACAAAGATACCC 2156
Query 2155 GAACTGCCTCCTCCTA-CTTACTGTGTATCCATCTTTTCATGTCTGAGCAAACCGCCTGT 2213
|||||||||||||| | || |||||| ||| ||||||||||||||||||||||| |||||
Sbjct 2157 GAACTGCCTCCTCCCAACT-ACTGTGCATCTATCTTTTCATGTCTGAGCAAACCACCTGT 2215
Query 2214 TGTTCTAGGGATTTGCAAGATCCATCAAGGGATATGTTCAGTAAGAGAAAGCTTTTGTCT 2273
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2216 AGTTCTAGGGATTTGCAAGATCCATCAAGGTATATGTTCAGTGAGAGAAAGCTTTTGTCT 2275
Query 2274 CGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGACCATGAAAATGACAAGGT 2333
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2276 CGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGACCATGAAAACGAGAAGGT 2335
Query 2334 GGTTGGACCAGCACTTGCAGCTCTCTCTACATTGTTAGAGGACGGTTTAGATGTTGTACA 2393
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2336 GGTTGGACCAGCACTTGCAGCTCTTTCTACATTGTTAGAAGACGGTTTAGATGTTGTACA 2395
Query 2394 AGGAGTGAGATTAATTGATGAAGCAGACGGGATTACGCCTATATTAAATGTTCTTTTGGA 2453
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 2396 AGGAGTGAGATTGATTGATGAAGCAGATGGGATTACACCTATATTAAACGTTCTTTTGGA 2455
Query 2454 GAATCGAACAGAGAATTTAAGGATTAGAGCTGTGTGGATGGTCGAGAGGATCTTACGTAT 2513
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2456 GAATCGAACAGAGAATTTAAGGATTAGAGCTGTTTGGATGGTTGAGAGGATCTTACGTAT 2515
Query 2514 TGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAATGTAACTGCAGCACTTGTGGACGC 2573
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2516 TGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAACGTAACTGCAGCACTTGTGGACGC 2575
Query 2574 CTTTCAAAACGCCGATTTTAGGACACGACAGATTGCAGAGAAGGCGTTGAGGCACATCGA 2633
|||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 2576 CTTTCAAAACGCAGATTTTAGGACGCGGCAGATTGCTGAGAAGGCGTTGAGGCACATCGA 2635
Query 2634 CAAAATCCCAAACTTCTCTGGTATATTCACCAACATTGGTTAGATCTATATACATTCTTG 2693
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 TAAAATCCCAAACTTCTCTGGTATATTCACCAACATTGGTTAGATCTATATACATTCTTG 2695
Query 2694 TAAATGATTTTAAGATAATATGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTT 2753
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2696 TAAATGATTTTAAGATAATTTGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTT 2755
Query 2754 CAAAGTTGATAAACACTGCTCATTGAGGAACAAAATTTTTCTAATGGGAGTG-AGTTCAA 2812
|||||||||||||||||||||||| |||||||||| ||||||| || |||| | |||||
Sbjct 2756 CAAAGTTGATAAACACTGCTCATTAAGGAACAAAAAATTTCTAAAGGTAGTGCA-TTCAA 2814
Query 2813 AAGTCTGGTATTTAAGCGTAAGAGGATTTGCTACATTTAACTTT 2856
||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2815 AAGTCTGGTATTTAAGCTTAAGAGGATCTGCTACATTTAACTTT 2858
> Ahg921044 jgi|Araly1|921044|scaffold_102325.1
Length=2458
Score = 1729 bits (936), Expect = 0.0
Identities = 1975/2466 (80%), Gaps = 113/2466 (5%)
Strand=Plus/Plus
Query 252 TGGAAGTTGGGATGG-AAGCCAATCGGATAACAGCTCACAATTCGAGCCAGGGA-TTGAT 309
|||||| | |||||| || ||| || ||| | ||||| || || |||| | ||| | |||
Sbjct 26 TGGAAGCTCGGATGGTAA-CCAGTCAGATGATAGCTCTCATTTTGAGCGA-GGAGTAGAT 83
Query 310 AACATATACGAAGCTTTTATCTGTCCATTGACAAAGCAAGTTATGCATAATCCTGTCACT 369
| || || ||||| || ||||| |||||||||||| | ||||||||| |||||||||||
Sbjct 84 CATATCTATGAAGCATTCATCTGCCCATTGACAAAGGAGGTTATGCATGATCCTGTCACT 143
Query 370 TTAGAGAATGGTCAG-ACATTTGAGCGTGAAGCTATTGAGAAATGGTTTCAA-GAATGTC 427
||||||||||| | | ||||| ||||||||||| ||||| |||||| ||||| || ||||
Sbjct 144 TTAGAGAATGG-CCGAACATTCGAGCGTGAAGCCATTGAAAAATGG-TTCAAGGAGTGTC 201
Query 428 GTGAAAACGGTCA-ACCTCTATCTTGTCCTATAACTTCTAAG-GAGTTGAGTATCACTGA 485
| || | || | ||||| |||||| ||| | |||||| | ||| | || | ||||||
Sbjct 202 GGGATAGTGG-GAGACCTCCATCTTGCCCTTTGACTTCT-CGTGAGCTCAGCAGCACTGA 259
Query 486 TCTAAGTCCAAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCAAGGAATGATGC 545
| |||| || || |||||| | ||||||||||| |||||||||||| | |||||||||||
Sbjct 260 TGTAAGCCCCAGCATAGCTCTGCGTAACACTATCGAAGAGTGGAGATCCAGGAATGATGC 319
Query 546 TTTGAAGCTTGATATTGCTCGTCAGTCACT-TTATTTGGGAAATGCTGAGACTAATATTT 604
| |||||||| ||||||||||||||||| || ||| |||||||||||||| ||||||
Sbjct 320 TGCCAAGCTTGACATTGCTCGTCAGTCACTGTT-TTTAGGAAATGCTGAGACCGATATTT 378
Query 605 TGCTGGCTTTGAAGAATGT-CAGAGAGATTTGTAGGAATATACG-TAAAATTAGGCAACG 662
||| ||||||| | |||| | || ||||||| |||| || || | ||| |||||| |
Sbjct 379 TGCAAGCTTTGATGCATGTGC-GACAGATTTGCAGGACCATCCGATTAAA-TAGGCATGG 436
Query 663 TGTGTGCAATC-CTCAGCTTGTTCGGT-TGATTACCGATATGCTAAAGAGTAGTAGTCAT 720
||| |||| | |||||||| || | |||| | ||| ||| |||| |||| ||| |||
Sbjct 437 TGTACGCAA-CTCTCAGCTT-ATCCATATGATCATCGACATGTTAAAAAGTACTAGCCAT 494
Query 721 GA-AGTGCGGTGTAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAGAGAG 779
| |||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 495 -AGAGTGCGGTATAAGGCTCTACAAACTCTTCAAGTTGTCGTTGAAGGAGATGACGAGAG 553
Query 780 CAAGGCAATAGTAGCTGAAGGAGACACTGTGCGTACTA-TAGTTAAGTTCTTGTCTCAAG 838
|||||| |||||||||||||| |||||||||||||| | ||||||||||||| || || |
Sbjct 554 CAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTAC-ACTAGTTAAGTTCTTATCACACG 612
Query 839 AGCCATCAAAGGGGAGGGAAGCAGCTGTTTCCGTGTTGTTTGAGCTCTCTAAATCTGAAG 898
||||||||||||||||||| || ||||||||| || ||||||||||||||||||| ||||
Sbjct 613 AGCCATCAAAGGGGAGGGAGGCTGCTGTTTCCTTGCTGTTTGAGCTCTCTAAATCAGAAG 672
Query 899 CATTATGCGAGAAGATTGGATCAATCCATGGAGCAATCATCTTATTGGTTGGTCTGACAA 958
| || |||||||||||||| || || ||||||||| | || |||||| ||||||||||||
Sbjct 673 CTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTTATATTATTGATTGGTCTGACAA 732
Query 959 GCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATA-AAACTTTGACAAATTTG 1017
||||||| ||||| |||||||||| ||||||||||||||||| || ||| || ||| ||
Sbjct 733 GCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGATAGAACCTTGGA-AAACATG 791
Query 1018 GAGAGGTCAGAGGAAAATGTTCGACAGATGGCTATCA-ATGGTAGACTGCAGCCTCTTCT 1076
|||||||||||||||| |||| | ||||||||| ||| |||||||||| |||||||||||
Sbjct 792 GAGAGGTCAGAGGAAATTGTTAGGCAGATGGCT-TCATATGGTAGACTCCAGCCTCTTCT 850
Query 1077 TGCTAAACTTCTTGAAGGTTCACCGGAAACAAAAGTTTCCATGGCTTTCTATCTTGGGGT 1136
| ||||| |||||||| ||||| ||||||||| | || ||||||| || ||| ||||
Sbjct 851 AGGAAAACTCCTTGAAGGCTCACCTGAAACAAAACTCTCTATGGCTTCCTTTCTCGGGGA 910
Query 1137 TCTTGCTTTAAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTAT 1196
||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 911 GCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGTTCTTCTCTTGT 970
Query 1197 CGATCTTATGAGAACTCGCGACATGAGCCAACGGGAAGCTGCTTTGGGAGCTCTTAACAA 1256
|||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||
Sbjct 971 CGATCTTATGAGAACTGGTGACATGCCCCAACGGGAAGCTGCTTTGAAAGCTCTTAACAA 1030
Query 1257 CATCTCATCCTTTGAAGGGAGTGCTAAACTCTTAATCAACACCGGAATTCT-CCCACCGC 1315
|||||||| || |||||||||||||| |||| |||| || |||||||| ||| || |
Sbjct 1031 AATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATTCTTCCC-CCAC 1089
Query 1316 TTATCAAAGA-CTTGTTCTATGTTGGGCCAAACCAGCTTCCAATCCGACTT-AAAGAAGT 1373
|||||||||| || ||| ||||| ||||||||| | |||||||| || || ||||||||
Sbjct 1090 TTATCAAAGATCT-GTTTTATGTGGGGCCAAACAACCTTCCAATTCGG-TTGAAAGAAGT 1147
Query 1374 CTCTGCAACTATTCTTGCCAATATAGTGAACATTGGGTACGACTTCGACAAAGTTCCTGT 1433
|||||| ||||||||||| || ||||| ||||| ||||| ||||| |||||||| |
Sbjct 1148 CTCTGCCACTATTCTTGCTAACATAGTAAACATCGGGTATGACTTTGACAAAGT-C---- 1202
Query 1434 TGGACCTCATCACCAAACTCTTGTTTCAGAGGAA-ATAGTGGAGAACCTTCTCCAACTAA 1492
|| || | | |||||||| || | ||||||||| || ||||| ||||
Sbjct 1203 ---AC-TC-T--------T---GTTTCAGAC-AACAGAGTGGAGAATCTGCTCCATCTAA 1245
Query 1493 CAAGCAACACTGGTCCAGAAATCCAAG-GAAAGCTGTTGGCGGTTCTTGTTGGACTCACT 1551
|||||||| ||||||| ||||| | | |||||||||| ||||||||||||||||||
Sbjct 1246 TTAGCAACACAGGTCCAGCGATCCA-GTGCAAGCTGTTGGAGGTTCTTGTTGGACTCACC 1304
Query 1552 AGCTGTCCAAACTCGGTTATTAATGTTGTTTCTGCCATCAGAAAC-TCAGCTGCCATCAT 1610
|| || ||||| | ||| || ||||||| ||| || | |||| || | ||| |||||
Sbjct 1305 AGTTGCCCAAAAACAGTTCCAAAAGTTGTTTATGCAATTA-AAACCTCCGGTGCAATCAT 1363
Query 1611 AAGCTTGGTTCAGTTTGTTGAGATAC-ATGAGAACGATGATTTGCGGTTAGCTTCTATCA 1669
|| |||||||||||| | ||| | | | ||||| ||||||||||| || ||||| || |
Sbjct 1364 CAGTTTGGTTCAGTTTATAGAGGTCCGA-GAGAATGATGATTTGCGTTTGGCTTCCATAA 1422
Query 1670 AGCTTCTTCATAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGCGTTGCGTAGCA 1729
|||||||||||||| |||||||| |||||||||||||||||| || || || || |||
Sbjct 1423 AGCTTCTTCATAACCTTTCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATGTGGCA 1482
Query 1730 CTGTTGGACAGCTCGGAAGCCTTGTTTCGATCATATCAGAGAATACACCAACAATCACTG 1789
||| ||||| ||||||||||||||| | ||||| ||||| || ||||||| ||||||
Sbjct 1483 CTGCAGGACAACTCGGAAGCCTTGTTGCAATCATTTCAGAAAAGACACCAA---TCACTG 1539
Query 1790 AGGAACAAGCTGCAGCTGCTGGACTTTTAGCTGAACTT-CCTGAGAGAGATTTGGTTCTG 1848
| ||||| |||||| ||||||| || ||||||||| || || || || ||||||| ||||
Sbjct 1540 AAGAACAGGCTGCAACTGCTGGGCTCTTAGCTGAA-TTGCCAGATAGGGATTTGGGTCTG 1598
Query 1849 ACA-ATGAGATTGTTAAGA-GAAGGTGCTTTTGAGAAAATCATCTCCAA-GAT-AGTTGG 1904
|| | ||||| |||| || | ||||||||||| |||||||||||||| | | | ||||
Sbjct 1599 ACTCAGGAGAT-GTTA-GAAGTTGGTGCTTTTGAAAAAATCATCTCCAAAG-TGA-TTGG 1654
Query 1905 TATTCGCCAAGGAGAAATCAGAGG-AATCCGGTTCGAGAGAACATTTCTCGAAGGACTTG 1963
|| |||||||| || |||| ||| ||| |||| | ||| | ||||| ||||||||||
Sbjct 1655 AATCCGCCAAGGGGATATCA-AGGGAATGAGGTTTGTGAGTCCTTTTCTGGAAGGACTTG 1713
Query 1964 TTAGTATTCTCGCTCGGATCACCTTCGCACTCACCAAGGAGACT-GACGCCACTTTG-TT 2021
| |||| || ||| |||| || || | ||| ||| ||| || | |||| || ||
Sbjct 1714 TGCGTATACTTGCTAGGATTACTTTTGTTGTCAACAAAGAGGCTCGG-GCCA-TTACCTT 1771
Query 2022 CTGCTGTGAGAAAAATCTTCCTTCACTTTTCCTTGATCTCCTTCAATCCAACAGTCAAGA 2081
||| ||||| | ||| || |||| || |||||| |||| |||||||||||| |||||||
Sbjct 1772 TTGCCGTGAGTACAATGTTGCTTCGCTCTTCCTTCATCTGCTTCAATCCAACGGTCAAGA 1831
Query 2082 TAACATCCAGAGGGCTTCTGCAACAGCATTGGAGAATCTTTCACTTGAATCCAAAAATCT 2141
||||||||||| || ||| || | || || |||||||||||||| || || | ||| ||
Sbjct 1832 TAACATCCAGATGGTTTCCGCCATGGCTTTAGAGAATCTTTCACTAGAGTCTATAAAGCT 1891
Query 2142 TACAAAGATACCTGAACTGCCTCCTCCT-A-CTTACTGTGTATCCATCTTTTCATGTCTG 2199
|| | ||| ||||| | |||||||| | | || |||||| || |||||||||||| ||
Sbjct 1892 GACTAGGATGCCTGATCCGCCTCCTC-TGAACT-ACTGTGGCTCGATCTTTTCATGTATG 1949
Query 2200 AGCAAACCGC-CTGTTGTTCTA-GGGATTTGCAAGATCCATCAAGGGA-TATGTTCAGTA 2256
|| ||||| | | ||||| | ||| | ||||||||||| || |||| |||||||| ||
Sbjct 1950 AGAAAACCACAC-GTTGTAA-ACGGGCTATGCAAGATCCACCA-GGGAATATGTTCATTA 2006
Query 2257 AGAGAAAGC-TTTTGTCTCGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGA 2315
||||||| | ||||| || || |||||| |||| || || || || || | ||| |||||
Sbjct 2007 AGAGAAA-CATTTTGCCTTGTCGAAGGAGAAGCTGTGGAGAAATTAGTGGCTCTATTAGA 2065
Query 2316 CCATGAAAATGACAAGGTGGTTG-GACCAGCACTTGCAGCTCTCTCTA-CATTGTTAGAG 2373
||||||||||| || ||||||| | || ||||| |||||||| || | | || | ||
Sbjct 2066 TCATGAAAATGAGAAAGTGGTTGAGGCC-GCACTGGCAGCTCTTTCAAGC-TTACTCGAA 2123
Query 2374 GACGGTTTAGATGTTGTACAA-GGAGTGA-GATTAATTGATGAAGCAGACGGGATTAC-G 2430
||||| ||||||| | | || || || | ||| | |||||||||| || ||||| || |
Sbjct 2124 GACGGACTAGATGTAG-AGAAAGGGGTCAAGAT-ACTTGATGAAGCGGAGGGGAT-ACCG 2180
Query 2431 CCTATATTAAATGTTCTTTTGGAGAATCGAACAGAGAATTTAAGGATTAGAGCTGTGTGG 2490
| |||| |||| ||||| |||||| |||||||||| | | || ||||| || |||
Sbjct 2181 CATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAGGCTGACGAGGAGAGCGGTTTGG 2240
Query 2491 ATGGTCGAGAGGATCTTACGTATTGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAAT 2550
||||| || |||||||| || |||||||| || || ||||| |||| ||| ||||| |
Sbjct 2241 ATGGTGGAAAGGATCTTGCGGATTGAAGACATCGCAAGAGAGGTGGCAGAGGAACAGACC 2300
Query 2551 GTAA-CTGCAGCACTTGTGGACGCCTTTC-AAAACGCCGATTTTAGGACACGACAGATTG 2608
| | | || |||||||||||||| |||| ||||||| |||||||| || |||||||| |
Sbjct 2301 CTGAGC-GCTGCACTTGTGGACGC-TTTCCAAAACGCTGATTTTAGAACGCGACAGATCG 2358
Query 2609 CAGAGAAGGCGTTGAGGCACATCGACAAAATCCCAAACTTCTCTGGTATATTCACCAACA 2668
| ||||| ||||||| ||||| || || |||||||||||||| ||||||||| |||| |
Sbjct 2359 CTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTTCTCAGGTATATTC-CCAA-A 2416
Query 2669 T-TGGT 2673
| ||||
Sbjct 2417 TATGGT 2422
> Ahg476796 jgi|Araly1|476796|fgenesh2_kg.2__1926__AT1G76400.1
Length=2036
Score = 226 bits (122), Expect = 8e-58
Identities = 143/153 (93%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 2705 AAGATAATATGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTTCAAAGTTGATA 2764
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 AAGATAATTTGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTTCAAAGTTGATA 1977
Query 2765 AACACTGCTCATTGAGGAACAAAATTTTTCTAATGGGAGTG-AGTTCAAAAGTCTGGTAT 2823
||||||||||||| |||||||||| ||||||| || |||| | ||||||||||||||||
Sbjct 1976 AACACTGCTCATTAAGGAACAAAAAATTTCTAAAGGTAGTGCA-TTCAAAAGTCTGGTAT 1918
Query 2824 TTAAGCGTAAGAGGATTTGCTACATTTAACTTT 2856
|||||| ||||||||| ||||||||||||||||
Sbjct 1917 TTAAGCTTAAGAGGATCTGCTACATTTAACTTT 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107795393350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5