BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76405.2
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476797 jgi|Araly1|476797|fgenesh2_kg.2__1927__AT1G76405.2 1072 0.0
Ahg921048 jgi|Araly1|921048|scaffold_102329.1 492 2e-138
> Ahg476797 jgi|Araly1|476797|fgenesh2_kg.2__1927__AT1G76405.2
Length=712
Score = 1072 bits (580), Expect = 0.0
Identities = 680/725 (94%), Gaps = 20/725 (3%)
Strand=Plus/Plus
Query 1 GCAGAGGATGATACAGTAGTC-GAAGTGTG-CAAAAACTAGGTGAGGTTTTGGTTTTGTT 58
|||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1 GCAGAGGATGATACAGTAATCGGAAGTGTGAAAAAAACTAGGTGAGGTTTTGGTTTTG-- 58
Query 59 GACTCAGTGAGGATTTTCTAGGCGATTTTCTCGAGAAAATCGTTTGAGGAAAATGGAGAC 118
| ||||||||| |||||||| | | |||||||||| ||||||||||||||||||
Sbjct 59 G-CTCAGTGAGAATTTTCTA-G-G-------CGAGAAAATCTTTTGAGGAAAATGGAGAC 108
Query 119 TTCTATGAGGTATACCAGCAATTCCAAGTCTATGAAGATTCATGCCAAAGAGAAGGTTCC 178
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 109 TTCTCTGAGGTATACCTGCAATTCCAAGTCTATGAAAATTCATGCCAAAGAGAAGGTTCC 168
Query 179 GGTGAACTCAAAAACCCATTTACAGCTTCATGGAGAGTTAGATACTGGAACTGGGGCTCC 238
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 169 GGTGAACTCGAAAACCCATTTACAGCTTCATGGAGAGCTAGATACTGGAACTGGGGCCCC 228
Query 239 GAGTTACTTCTGTGCGATGATTAGACACTTTTTTCCTGAGGCTTCAACAGGCCTTGGGGT 298
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 229 GAGTTACTTTTGTGCAATGATTAGACACTTTTTTCCTGAGGCTTCAACAGGTCTTGGAGT 288
Query 299 AGGATTGCATTATGATAAGCGCCAAAAGCTTCGGTGTCTTGTACGCGGaaaaaaaGAGTT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AGGATTGCATTATGATAAGCGCCAAAAGCTTCGGTGTCTTGTACGCGGAAAAAAAGAGTT 348
Query 359 TCCTGTAAGAGCTGATAAGCGTGTAACCTTTAATATTAAAGGGCGGTGTGATATTGATCA 418
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 349 TCCTGTAAGAGCTGATAAGCGCGTAACCTTTAATATTAAAGGGCGGTGTGATTTTGATCA 408
Query 419 GGACTTAAATCAGAAGAACCCC-AAAGGAGCAGCAGAATTTGCCTGGAACATAATGGATT 477
||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 409 AGACTTAAATCAGA-GAAACCCGAAAGGAGCTGCAGAATTTGCCTGGAACATAATGGATT 467
Query 478 TCAAGGAAGATCAGGATGTACGGATCAAAGTTGGCTACGAAATGTTTGATAAGGTCCCTT 537
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 468 TTAAGGAAGATCAGGATGTACGGATCAAAGTGGGCTACGAAATGTTTGATAAGGTCCCTT 527
Query 538 ATATGCAGATTAGAGAAAACAATTGGACTCTCAACGCGAACATGAAGGGAAAATGGAACT 597
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 528 ATATGCAGATCAGAGAAAACAATTGGACTCTCAACGCAAACATGAAGGGAAAATGGAACT 587
Query 598 TGCGGTATGACCTGTAACTGCAtttt-t-ttCA--ATCATCATCTGAGAAATGTATTGAT 653
|||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||
Sbjct 588 TGCGGTATGACCTGTAGCTGCATTTTATATTCATCATCATCATCTGAGAAATGTATTGAT 647
Query 654 ACCACTGCTGATGAACACATTTTAATTCTACCAATTAATCAAATTCAGAGATCTTCCAAA 713
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ACCACTACTGATGAACACATTTTAATTCTACCAATTAATCAAATTCAGAGATCTTCCAAA 707
Query 714 TCATC 718
|||||
Sbjct 708 TCATC 712
> Ahg921048 jgi|Araly1|921048|scaffold_102329.1
Length=544
Score = 492 bits (266), Expect = 2e-138
Identities = 447/533 (84%), Gaps = 18/533 (3%)
Strand=Plus/Plus
Query 91 GAGAAAATCGT-TTGAGGAAAATGGAGACTTCTATGAGGTATACCAGCAATTCCAAGTCT 149
||||||||| | |||| ||||||||||||||| |||| ||| | | |||||||| ||||
Sbjct 1 GAGAAAATC-TACTGAGAAAAATGGAGACTTCTCTGAGATATGCTACCAATTCCAGGTCT 59
Query 150 ATGAAGATTCATGCCAAAGAGAAGGTTCCGGTGAACTCAAAAACCCATTTACAGCTTCAT 209
|||| ||||||||||| |||||| ||||||||||||| ||||| | | |||||||||
Sbjct 60 CTGAAAATTCATGCCAAGGAGAAGTTTCCGGTGAACTCCAAAACTCGCCTGCAGCTTCAT 119
Query 210 GGAGAGTTAGATACTGGAACTGGGGCT-CCGAGTTACTTCTGTGCGATGATTAGACACTT 268
|||||| ||||||| ||| |||| | | || |||||||||||||| ||||| |||||| |
Sbjct 120 GGAGAGCTAGATACAGGAGCTGGAG-TGCCAAGTTACTTCTGTGCAATGATAAGACAC-T 177
Query 269 TTTTCC-TGAGGCTTCAACAGGCCTTGGGGTAGGATTGCATTATGATAAGCGCCAAAAGC 327
|||||| ||||||||||||| ||||||| | || |||||||||||||| ||| ||||||
Sbjct 178 TTTTCCATGAGGCTTCAACAAGCCTTGGCCTTGGTTTGCATTATGATAAACGCGAAAAGC 237
Query 328 TTCGGTGTCTTGTACG-CGGaaaaaaaGAGTTTCCTGTAAGAGCTGAT-AAGCGTGTAAC 385
|||||||||||||||| ||||||| | |||||||||| | | ||||| ||| ||||||
Sbjct 238 TTCGGTGTCTTGTACGTGGGAAAAAGA-AGTTTCCTGTGATAACTGATGAAG-TTGTAAC 295
Query 386 CTTTAATATTAAAGGGCGGTGTGATATTGATCAGGACTTAAATCAGAAGAACCCCAAAGG 445
||||||||| ||||| | |||||| |||| |||||||| ||||| |||| | |||||
Sbjct 296 CTTTAATATCAAAGGAAGATGTGATTTTGACCAGGACTTTGTTCAGAGGAACGCGAAAGG 355
Query 446 AGCAGCAGAATTTGCCTGGAACATAATGG-A-TTTCAAGGAAGATCAGGATGTACGGAT- 502
||| || ||||||| |||||||| |||| | |||| || ||||||||||| |||| |
Sbjct 356 AGCTGCTGAATTTGATTGGAACAT-ATGGAAGTTTC-AGAAAGATCAGGATTTACGCCTC 413
Query 503 CAAAGTTGGCTACGAAATGTTTGATAAGGTCCCTTATATGCAGATTAGAGAAAACAATTG 562
| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 414 CGAA-TTGGCTACGAAATGTTTGAGAAGGTCCCTTATATGCAGATTAGAGAAAACAATTG 472
Query 563 GACTCTCAACGCGAACATGAAGGGAAAATGGAACT-TGCGGTATGACCTGTAA 614
|||| ||||| | ||| |||| ||||||||||| | || ||| ||| ||||||
Sbjct 473 GACTTTCAACACCAACTTGAAAGGAAAATGGAA-TGTGAGGTTTGATCTGTAA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5