BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76410.1 Length=799 Score E Sequences producing significant alignments: (Bits) Value Ahg316562 jgi|Araly1|316562|fgenesh1_pm.C_scaffold_2001595 885 0.0 > Ahg316562 jgi|Araly1|316562|fgenesh1_pm.C_scaffold_2001595 Length=561 Score = 885 bits (479), Expect = 0.0 Identities = 527/551 (96%), Gaps = 0/551 (0%) Strand=Plus/Plus Query 68 atggcgcgccttctcttccgtcttctcCAAGAAGCCAATTCTACATCTCCGGCTGAAGCT 127 |||| |||||||||||||||||||||||||||| ||||||||||||| ||| | |||||| Sbjct 1 ATGGGGCGCCTTCTCTTCCGTCTTCTCCAAGAAACCAATTCTACATCGCCGACGGAAGCT 60 Query 128 TCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTTGCGGTTCTTCTTTGTGCACTGACA 187 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 CCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTCGCGGTTCTTCTTTGTGCACTGACA 120 Query 188 TGTATCATCGGCTTAATAGCCGTCTCTCGATGCGCTTGGCTCCGCCGTATCGCCTCAAGA 247 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 121 TGTATCATCGGCTTAATCGCCGTCTCTCGATGCGCATGGCTCCGCCGTATCGCCTCAAGA 180 Query 248 AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCAGCCAACAAAGGATTGAAAAAG 307 |||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 181 AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCGGCTAACAAAGGTTTGAAAAAG 240 Query 308 AAAGTCCTCCGGTCGTTACCGAAACTCACCTACTCGCCGGATTCTCCGCCGGCGGAGAAA 367 ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 241 AAAGTCCTCCGATCGTTACCGAAACTCACTTACTCGCCGGATTCTCCACCGGCGGAGAAA 300 Query 368 CTCGTGGAGTGTGCTATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTTAGGGTGTTG 427 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 301 CTCGTGGAGTGTGCCATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTCAGGGTGTTG 360 Query 428 CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT 420 Query 488 TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTACCAGGTGTCATAAATGTGGCGGGTTA 547 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 421 TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTGCCAGGTGTCATAAATGTGGCGGGTTA 480 Query 548 CCCGGTAGCTCAAGTTCAGGACCCGAACCCGATACCCGAATCAAACAACGTGAAGATGGT 607 |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| | Sbjct 481 CCCGGTAGCTCAAGCTCAGGATCCGAACCCGATACCCGAATCAAGCAACGAGAAGATGAT 540 Query 608 CCTGATAACTT 618 |||| |||||| Sbjct 541 CCTGCTAACTT 551 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29507137758 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5