BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76410.1

Length=799
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316562 jgi|Araly1|316562|fgenesh1_pm.C_scaffold_2001595           885    0.0  


> Ahg316562 jgi|Araly1|316562|fgenesh1_pm.C_scaffold_2001595
Length=561

 Score =  885 bits (479),  Expect = 0.0
 Identities = 527/551 (96%), Gaps = 0/551 (0%)
 Strand=Plus/Plus

Query  68   atggcgcgccttctcttccgtcttctcCAAGAAGCCAATTCTACATCTCCGGCTGAAGCT  127
            |||| |||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||
Sbjct  1    ATGGGGCGCCTTCTCTTCCGTCTTCTCCAAGAAACCAATTCTACATCGCCGACGGAAGCT  60

Query  128  TCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTTGCGGTTCTTCTTTGTGCACTGACA  187
             |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   CCTCCGCCTTTCAACTCCGACCTCGTCCTCATCCTCGCGGTTCTTCTTTGTGCACTGACA  120

Query  188  TGTATCATCGGCTTAATAGCCGTCTCTCGATGCGCTTGGCTCCGCCGTATCGCCTCAAGA  247
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  121  TGTATCATCGGCTTAATCGCCGTCTCTCGATGCGCATGGCTCCGCCGTATCGCCTCAAGA  180

Query  248  AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCAGCCAACAAAGGATTGAAAAAG  307
            |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct  181  AACAGATCGGATCAAACTCATCCACCGCCGGTAGCTGCGGCTAACAAAGGTTTGAAAAAG  240

Query  308  AAAGTCCTCCGGTCGTTACCGAAACTCACCTACTCGCCGGATTCTCCGCCGGCGGAGAAA  367
            ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  241  AAAGTCCTCCGATCGTTACCGAAACTCACTTACTCGCCGGATTCTCCACCGGCGGAGAAA  300

Query  368  CTCGTGGAGTGTGCTATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTTAGGGTGTTG  427
            |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  CTCGTGGAGTGTGCCATCTGTTTAACGGAATTCGCCGCCGGAGACGAGCTCAGGGTGTTG  360

Query  428  CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT  487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CCGCAGTGTGGACATGGTTTCCACGTATCGTGTATCGACACGTGGCTTGGATCACACTCT  420

Query  488  TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTACCAGGTGTCATAAATGTGGCGGGTTA  547
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  421  TCTTGTCCTTCTTGCCGTCAAATCTTGGTGGTTGCCAGGTGTCATAAATGTGGCGGGTTA  480

Query  548  CCCGGTAGCTCAAGTTCAGGACCCGAACCCGATACCCGAATCAAACAACGTGAAGATGGT  607
            |||||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||| |
Sbjct  481  CCCGGTAGCTCAAGCTCAGGATCCGAACCCGATACCCGAATCAAGCAACGAGAAGATGAT  540

Query  608  CCTGATAACTT  618
            |||| ||||||
Sbjct  541  CCTGCTAACTT  551



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29507137758


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5