BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76420.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg476799 jgi|Araly1|476799|fgenesh2_kg.2__1929__AT1G76420.1 1698 0.0 > Ahg476799 jgi|Araly1|476799|fgenesh2_kg.2__1929__AT1G76420.1 Length=1107 Score = 1698 bits (919), Expect = 0.0 Identities = 1053/1115 (94%), Gaps = 19/1115 (2%) Strand=Plus/Plus Query 1 ACTTCCCATCACCTTTTGTATCATTGCTATCTTTGTTCTTCCTTCTGGTGTCTCTTCAGT 60 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1 ACTTCCCATCACCTTTTGTATCATTGCTCTCTTTGTTCTTCCTTTTGGTGTCTCTTCAGT 60 Query 61 GTAACAAAAAGTCTCTTTTTCAGTTATATTAAGT-AAAAGATGATGCTTGCGGTGGAAGA 119 ||||| ||||| ||||||||| |||||| ||||| ||||||||||||||||||||||||| Sbjct 61 GTAAC-AAAAGCCTCTTTTTCGGTTATAATAAGTAAAAAGATGATGCTTGCGGTGGAAGA 119 Query 120 TGTGTTAAGCGAACTCGCCGGAGAAGAAAGGAACGAGAGAGGATTGCCACCTGGCTTCCG 179 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 120 TGTGTTAAGCGAACTCGCCGGAGAAGAAAGAAACGAGAGAGGATTGCCACCTGGCTTCCG 179 Query 180 GTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGG 239 Query 240 TGGTCTCTCCGGCATTCACATTTCCGAAGTTGATCTCAACCGCTGTGAACCTTGGGAGCT 299 || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 240 AGGACTCTCCGGCATTCACATTTCCGAAGTTGATCTTAACCGTTGTGAACCTTGGGAACT 299 Query 300 ACCAGAAATGGCGAAGATGGGAGAGAGAGAGTGGTACTTTTATAGTCTAAGGGACAGGAA 359 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 300 ACCCGAAATGGCGAAGATGGGAGAGAAAGAGTGGTACTTTTATAGTCTAAGGGATAGGAA 359 Query 360 ATATCCGACAGGTTTGAGGACTAACAGAGCAACTACTGCTGGATACTGGAAAGCTACCGG 419 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 360 ATATCCGACGGGTTTGAGGACTAACAGAGCAACTACTGCTGGATATTGGAAAGCTACCGG 419 Query 420 CAAAGATAAGGAAGTCTTCTCCGGCGGAGGAGGACAGCTTGTTGGGATGAAGAAGACGTT 479 ||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||||| Sbjct 420 AAAAGATAAGGAGGTCTTCGCCGGCGGCGGAGGACAACTTGTTGGGATGAAGAAGACGTT 479 Query 480 GGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTA 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTA 539 Query 540 TCGCCTCGAAAACGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAG 599 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCGCCTCGAAACCGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAG 599 Query 600 AGTGTTCAATAAAACAGGAGACAGAAAAAATGTTGGATTAATCCATAACCAAATCAGCTA 659 ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| Sbjct 600 AGTGTTCAATAAAACAGGAGATAGAAAAAATGTTGGA--A-TCCATAACCAAATCAGCTA 656 Query 660 CCTTCATAACCATTCACTCTCAACAACACATCATCATCATCATGAAGCCTTACCTTTGCT 719 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 657 CCTTCATAACCATTCACTCTCAGCAACACATCATCATCATCATGAAGCCTTACCTTTGCT 716 Query 720 TATAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGAT-CCAC 778 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 717 TTTAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGATTCC-C 775 Query 779 ACCAAAACTACAATAATAACAACTTCCTTCATGGATCATCAGGCCACAACATCGACGAGC 838 |||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 776 ACCAAATTTACAATAATAAC--CT-CCTACATGGATCATCAGGCCACAACATCGACGAGC 832 Query 839 TCAAAGCCTTAATCAACCCTGTCGTCTCTCAGCTCAACGGTATCATCTTTCCTTCAGGGA 898 ||||||||||||||||||| |||||||||||||||||||| ||||||||| | | |||| Sbjct 833 TCAAAGCCTTAATCAACCCAGTCGTCTCTCAGCTCAACGGAATCATCTTTTCGCCGGGGA 892 Query 899 ACAACAACAACGACGAAGACGACTTCGACTTTAACCTCGGCGTGAAAACAGAGCAGTCTT 958 ||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 893 ACAACAACAACGATGAAGACGACTTCGACTTTAACCTCGGCGTGAAGTCAGAGCCGTCTT 952 Query 959 CGAACGGT---AA------CGAAATTGACGTACGAGATTACTTGGAGAACCCTCTGTTTC 1009 | |||||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 953 CCAACGGTGGTAATAATAACGAACTTGACGTACGAGATTACTTGGAGAACCCTCTGTTTC 1012 Query 1010 AGGAAGCGAGTTATGGTCTGTTGGGTTTTTCGTCTTCTCCTGGACCTCTTCACATGCTAC 1069 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1013 AGGAAGCGAGTTATGGTCTTTTGGGTCTTTCGTCTTCTCCTGGACCTCTTCACATGCTAC 1072 Query 1070 TAGATTCTCCATGTCCTTTAGGATTCCAGCTGTAG 1104 |||||||||||||||||||||| |||||||||||| Sbjct 1073 TAGATTCTCCATGTCCTTTAGGTTTCCAGCTGTAG 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5