BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76420.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476799 jgi|Araly1|476799|fgenesh2_kg.2__1929__AT1G76420.1 1698 0.0
> Ahg476799 jgi|Araly1|476799|fgenesh2_kg.2__1929__AT1G76420.1
Length=1107
Score = 1698 bits (919), Expect = 0.0
Identities = 1053/1115 (94%), Gaps = 19/1115 (2%)
Strand=Plus/Plus
Query 1 ACTTCCCATCACCTTTTGTATCATTGCTATCTTTGTTCTTCCTTCTGGTGTCTCTTCAGT 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1 ACTTCCCATCACCTTTTGTATCATTGCTCTCTTTGTTCTTCCTTTTGGTGTCTCTTCAGT 60
Query 61 GTAACAAAAAGTCTCTTTTTCAGTTATATTAAGT-AAAAGATGATGCTTGCGGTGGAAGA 119
||||| ||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 61 GTAAC-AAAAGCCTCTTTTTCGGTTATAATAAGTAAAAAGATGATGCTTGCGGTGGAAGA 119
Query 120 TGTGTTAAGCGAACTCGCCGGAGAAGAAAGGAACGAGAGAGGATTGCCACCTGGCTTCCG 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGTGTTAAGCGAACTCGCCGGAGAAGAAAGAAACGAGAGAGGATTGCCACCTGGCTTCCG 179
Query 180 GTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGG 239
Query 240 TGGTCTCTCCGGCATTCACATTTCCGAAGTTGATCTCAACCGCTGTGAACCTTGGGAGCT 299
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 240 AGGACTCTCCGGCATTCACATTTCCGAAGTTGATCTTAACCGTTGTGAACCTTGGGAACT 299
Query 300 ACCAGAAATGGCGAAGATGGGAGAGAGAGAGTGGTACTTTTATAGTCTAAGGGACAGGAA 359
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 300 ACCCGAAATGGCGAAGATGGGAGAGAAAGAGTGGTACTTTTATAGTCTAAGGGATAGGAA 359
Query 360 ATATCCGACAGGTTTGAGGACTAACAGAGCAACTACTGCTGGATACTGGAAAGCTACCGG 419
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 ATATCCGACGGGTTTGAGGACTAACAGAGCAACTACTGCTGGATATTGGAAAGCTACCGG 419
Query 420 CAAAGATAAGGAAGTCTTCTCCGGCGGAGGAGGACAGCTTGTTGGGATGAAGAAGACGTT 479
||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 AAAAGATAAGGAGGTCTTCGCCGGCGGCGGAGGACAACTTGTTGGGATGAAGAAGACGTT 479
Query 480 GGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTA 539
Query 540 TCGCCTCGAAAACGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAG 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGCCTCGAAACCGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAG 599
Query 600 AGTGTTCAATAAAACAGGAGACAGAAAAAATGTTGGATTAATCCATAACCAAATCAGCTA 659
||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 600 AGTGTTCAATAAAACAGGAGATAGAAAAAATGTTGGA--A-TCCATAACCAAATCAGCTA 656
Query 660 CCTTCATAACCATTCACTCTCAACAACACATCATCATCATCATGAAGCCTTACCTTTGCT 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 657 CCTTCATAACCATTCACTCTCAGCAACACATCATCATCATCATGAAGCCTTACCTTTGCT 716
Query 720 TATAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGAT-CCAC 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 717 TTTAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGATTCC-C 775
Query 779 ACCAAAACTACAATAATAACAACTTCCTTCATGGATCATCAGGCCACAACATCGACGAGC 838
|||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 776 ACCAAATTTACAATAATAAC--CT-CCTACATGGATCATCAGGCCACAACATCGACGAGC 832
Query 839 TCAAAGCCTTAATCAACCCTGTCGTCTCTCAGCTCAACGGTATCATCTTTCCTTCAGGGA 898
||||||||||||||||||| |||||||||||||||||||| ||||||||| | | ||||
Sbjct 833 TCAAAGCCTTAATCAACCCAGTCGTCTCTCAGCTCAACGGAATCATCTTTTCGCCGGGGA 892
Query 899 ACAACAACAACGACGAAGACGACTTCGACTTTAACCTCGGCGTGAAAACAGAGCAGTCTT 958
||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 893 ACAACAACAACGATGAAGACGACTTCGACTTTAACCTCGGCGTGAAGTCAGAGCCGTCTT 952
Query 959 CGAACGGT---AA------CGAAATTGACGTACGAGATTACTTGGAGAACCCTCTGTTTC 1009
| |||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 953 CCAACGGTGGTAATAATAACGAACTTGACGTACGAGATTACTTGGAGAACCCTCTGTTTC 1012
Query 1010 AGGAAGCGAGTTATGGTCTGTTGGGTTTTTCGTCTTCTCCTGGACCTCTTCACATGCTAC 1069
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1013 AGGAAGCGAGTTATGGTCTTTTGGGTCTTTCGTCTTCTCCTGGACCTCTTCACATGCTAC 1072
Query 1070 TAGATTCTCCATGTCCTTTAGGATTCCAGCTGTAG 1104
|||||||||||||||||||||| ||||||||||||
Sbjct 1073 TAGATTCTCCATGTCCTTTAGGTTTCCAGCTGTAG 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5