BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76440.1
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476801 jgi|Araly1|476801|fgenesh2_kg.2__1931__AT1G76440.1 747 0.0
> Ahg476801 jgi|Araly1|476801|fgenesh2_kg.2__1931__AT1G76440.1
Length=640
Score = 747 bits (404), Expect = 0.0
Identities = 519/570 (91%), Gaps = 26/570 (5%)
Strand=Plus/Plus
Query 11 GACGGTCACGCTGTTCCACGAAGCTTCGCTGTCAACACCATCATCGGAACTTACCGGAGT 70
|||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1 GACGGTCACGTTGTTCCTCGAAGCTTCGCAGTCAACACCATCATCGGAACCTACCGGATT 60
Query 71 TCGTTACGGTAGGTTTGGATTCTATCTCTT-GTGaaaaaa-aC-AGA---AA-C--ACAA 121
||| |||||||||||||||||||||||||| | ||||||| || ||| || | ||||
Sbjct 61 TCGCTACGGTAGGTTTGGATTCTATCTCTTGGGGAAAAAACACAAGAGGTAATCAGACAA 120
Query 122 AG-------ATGAACGCTGAGAATAATCAGACTACTACTACTCACTCGAAAGTGATCTCA 174
|| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 AGCTACACCATGAACACTGAGAATAATCAG------ACTACTCACTCGAAAGTGATCTCA 174
Query 175 CATGTATTCTGCACTGGTACTGCTAAGCTAGGCTCTGTTGGGCCACCCATTGGTCTTGTT 234
|||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 175 CATGTATTCTTCACTGGTACTGCTAAGCAAGGCTCTGCTGGGCCACCCATTGGTCTTGTC 234
Query 235 GATATTGGCGTCAGCGAAGTTGCTTACATCTTCCGAGTCTCTCTTCCTGGCATTGAGAAA 294
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 235 GATATTGGCGTCAGCGAAGTTGCTTACATCTTCAGAGTCTCTCTCCCTGGCATTGAGAAA 294
Query 295 AATCAAGATAAGATCAAATGTGAAATTCAGAGGGAGGGGAGAGTTTGCATCCAAGGAGTT 354
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 AATCAAGATAAGATCAAATGTGAAATTCAGAGGGAGGGAAGAGTTTGCATCCAAGGAGT- 353
Query 355 A-TACCTGAGATTGCGATTCCAAGTGACACGGGATGCTTATACAGAATGCAAGTGCAACA 413
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 354 AGTACCTGAGATTGCGATTCCAAGTGACACGGGATGCTTATACAGAATGCAGGTGCAACA 413
Query 414 GCTCTGTCCGCCTGGTCCATTCTCAATCACGTTTAATCTTCCGGGACAAGTGGATCCTCG 473
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 GCTCTGCCCGCCTGGTCCATTCTCAATCACGTTTAATCTTCCAGGACAAGTGGATCCTCG 473
Query 474 CTTGTTTTCTCCTA-ATTTTAGATCTGATGGGATCTTTGAAGTCGTCGTAGTCAAGCTCG 532
|||||||||||| | |||| ||| ||||||||||||||||||| || || ||||||||||
Sbjct 474 CTTGTTTTCTCCAACATTT-AGACCTGATGGGATCTTTGAAGTTGTTGTCGTCAAGCTCG 532
Query 533 GAGTGCGCATCCCAACTTCATAGTTCCGGT 562
|||| |||||||||||||| ||||||||||
Sbjct 533 GAGTACGCATCCCAACTTCTTAGTTCCGGT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28744679418
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5