BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76450.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476802 jgi|Araly1|476802|fgenesh2_kg.2__1932__AT1G76450.1 1290 0.0
> Ahg476802 jgi|Araly1|476802|fgenesh2_kg.2__1932__AT1G76450.1
Length=807
Score = 1290 bits (698), Expect = 0.0
Identities = 772/808 (96%), Gaps = 4/808 (0%)
Strand=Plus/Plus
Query 137 TCCAGAAGATGTTCATCAATTTCTGCGGCAATCTCTGTTCTTGACAGCTCCAACGAGGAA 196
||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||
Sbjct 1 TCCAGAAGATGTTCATCAATTCCTGTAGCAATCTCTGCTCTAGACAGCTCCAACGAGGAA 60
Query 197 CAACATCGAATTTCGTCTAGAGATCATGTTGGGATGAAGAGAAGAGACGTCATGTTACAG 256
||||||||||||||||||||||||||||| ||||| || |||||| | | ||||||||||
Sbjct 61 CAACATCGAATTTCGTCTAGAGATCATGTGGGGATTAAAAGAAGACAAGCCATGTTACAG 120
Query 257 ATAGCTTCCTCTGTTTTCTTCCTTCCATTGGCCATTTCACCTGCATTTGCAGAGACAAAT 316
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ATAGCTTCCTCTGTTTTCTTCCTTCCATTGGCCGTTTCACCTGCATTTGCAGAGACAAAT 180
Query 317 GCATCAGAAGCTTTCCGTGTGTACACAGATGAAACGAACAAATTCGAGATATCAATCCCA 376
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GCATCAGAAGCTTTCCGTGTGTACACAGATGAAGCGAACAAATTCGAGATATCAATCCCA 240
Query 377 C---AAGATTGGCAAGTCGGGCAAGCAGAACCTAATGGATTCAAGTCAATCACAGCTTTT 433
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGAAGATTGGCAAGTCGGGCAAGCAGAACCTAATGGATTCAAGTCAATCACAGCTTTT 300
Query 434 TACCCACAAGAAACTTCAACTTCCAATGTGAGTATAGCGATCACTGGACTAGGTCCAGAC 493
||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 301 TACCCTCGAGAAACTTCAACTTCCAATGTGAGCATAGCGATCACTGGACTAGGTCCGGAC 360
Query 494 TTCACCAGGATGGAATCATTCGGAAAGGTCGAAGCTTTCGCCGAAACATTGGTCAGTGGA 553
||||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||
Sbjct 361 TTCACCAGGATGGAATCTTTTGGAAAGGTCGAAGCTTTCGCTGAAACACTGGTCAGTGGA 420
Query 554 TTGGATAGAAGCTGGCAAAAACCAGTAGGAGTGACTGCAAAGCTAATCGATAGCAGAGCT 613
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 421 TTGGATAGAAGCTGGCAAAAACCAGCAGGAGTGACTGCAAAGCTAATCGATAGCAGATCT 480
Query 614 TCTAAGGGATTCTATTACATCGAGTACACCTTACAAAACCCTGGAGAAGCTCGCAAGCAT 673
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCCAAGGGATTCTATTACATCGAGTACACCTTACAAAACCCTGGAGAAGCTCGCAAGCAT 540
Query 674 TTGTACTCTGCAATTGGAATGGCAACAAACGGATGGTACAACCGTTTATACACTGTCACA 733
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 541 TTGTACTCTGCAATTGGAATGGCAACAAACGGTTGGTACAACCGCTTATACACTGTCACA 600
Query 734 GGACAGTTTACAGATGAAGAATCTGCTGAACAAAGCTCTAAGATCCAGAAGACAGTCAAG 793
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 601 GGACAGTTTACAGATGAAGAATCTGCTGAACAAAGCTCCAAGATCCAAAAGACAGTCAAG 660
Query 794 TCTTTCAGATTCATCTGAGAATGTCATTCATATCTATCAGCGGAACTAAATTATAGAATT 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTTCAGATTCATCTGAGAATGTCATTCATATCTATCAGCGGAACTAAATTATAGAATT 720
Query 854 GATCAAACAATTTGTTTACTGAACAATTACTTTTTTGCAATGAAATTCTGAGAAAAGAGC 913
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 721 TATCAAGCAATTTGTTTACTGAACAATCACTTTTTT-CAATGAAATTCTGAGAAAAGAGC 779
Query 914 CTACTCCATACTTTGAAGTAAGCTTCAG 941
| ||||||||||||||||||||||||||
Sbjct 780 CAACTCCATACTTTGAAGTAAGCTTCAG 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5