BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76460.1
Length=2123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476803 jgi|Araly1|476803|fgenesh2_kg.2__1933__AT1G76460.1 2689 0.0
> Ahg476803 jgi|Araly1|476803|fgenesh2_kg.2__1933__AT1G76460.1
Length=2076
Score = 2689 bits (1456), Expect = 0.0
Identities = 1838/2008 (92%), Gaps = 83/2008 (4%)
Strand=Plus/Plus
Query 162 TTCGACCCTGTAGCTTAGTTGTTGTTTATAATTTCTTGTGAT-CATTC-ACAGTACaaaa 219
|||||||||||||||| ||| ||||||||||||||||||||| | ||| |||||||||
Sbjct 98 TTCGACCCTGTAGCTTCGTTTTTGTTTATAATTTCTTGTGATCCTTTCTTTAGTACAAAA 157
Query 220 aaaCTAA-TTCACCCACCGActtcttcttcttcttc-tc-t-tctctGTGGCCCATCCTT 275
| |||| |||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 158 ACCCTAATTTCACCCACCGACTTCTTCTTCTTCTTCTTCTTCTCTCTGTGGCCCATCCTT 217
Query 276 AAACCCACACTGCTTTTGCTTTTCC-tttttttttCCGGGAAATTTGATCTCTTTACCTT 334
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 218 AAACCCACACTGCTTTTGCTTTTCCTTTTTTTTTTCCGGGAAATTTGATCTCTTTACCTT 277
Query 335 TCGTCATTATTAGTAGGGAATGATCTTTTAGttttttttttGTTTCCCCCAAATCTCACT 394
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 278 TCGTCATTATTAGTAGGGAATGATCTTTTAG---GTATTTTGTTTCCCCCAAATCTCACT 334
Query 395 TTTTCTCACTTCCTCTCCATCTCAAATTTCACACAACCGAGTAAACCCTAGAATCTCCGC 454
||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 335 TTTTCTCCCTTCTTCTCCATCTC-TATTTCACACAACCGAGTAAACCCTAGAATCTCCGC 393
Query 455 TTCTCATTCAATTGG-TT--TCA---TCACTGGTCTTAATCATTG---------CTAGGG 499
|||| || |||| || || ||| ||||||| ||||||||||| ||||||
Sbjct 394 TTCTAATCCAATGGGTTTCATCACTTTCACTGGGCTTAATCATTGCAATTATCTCTAGGG 453
Query 500 TTTACTCGGTTA-CCT-T-T-ATCATCA--T----CAATTGATCCTTGTTCATAATTCAT 549
|||||||||||| ||| | | ||||||| | |||||||||||||||||||||| |
Sbjct 454 TTTACTCGGTTACCCTCTATCATCATCACTTAGAAGAATTGATCCTTGTTCATAATTC-T 512
Query 550 CCtcttttctttctgtctttggcataaagtttcaa-tttttcttcttcttc-tct-t-tc 605
|| ||| || | |||||||||||||| ||||| ||||||||||||||| ||| | ||
Sbjct 513 -ATC--TTC-TT-T-TCTTTGGCATAAAGATTCAATTTTTTCTTCTTCTTCTTCTCTATC 566
Query 606 tCACTCAATCATGGCGTATCAGCCTGTTCCGGGTTCTGGGTTTCACTACTTGAACTCTCC 665
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 567 TCACTCAATCATGGCGTATCAGTCTGTTCCGGGTTCTGGGTTTCACTACTTGAATTCTCC 626
Query 666 TTTCGGTGATACAACTTTCACAAAGGTGTTCGTCGGTGGTCTTGCTTGGGAAACTCAAAG 725
||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 627 TTTTGGTGATACAACTTTCACAAAGGTATTCGTCGGTGGCCTTGCTTGGGAGACTCAAAG 686
Query 726 TGAAACTCTTCGCCAGCATTTCGAACAGTACGGTGAAATCCTTGAAGCTGTTGTCATTGC 785
|||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 687 TGAAACCCTTCGTCGGCATTTCGAACAGTTCGGTGAAATCCTTGAAGCTGTTGTCATTGC 746
Query 786 TGATAAGAACACTGGTCGATCCAAAGGATATGGCTTTGTGACATTCCGAGATCCAGAAGC 845
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 747 TGATAAGAACACTGGCCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAAGC 806
Query 846 TGCTAGGAGAGCTTGTGCTGACCCTACTCCGATTATAGACGGTAGACGTGCAAACTGTAA 905
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 807 TGCTAGGAGAGCTTGTGCTGACCCAACTCCGATTATAGACGGTAGACGTGCAAACTGTAA 866
Query 906 TCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCAGTGATACCTAACATGCC 965
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 867 TCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCATTGATACCTAATATGCC 926
Query 966 TGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGAGGTTCACT 1025
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 927 TGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGTGGTTCACT 986
Query 1026 TATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGTCTA 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGTCTA 1046
Query 1086 TCCTTATGGAGTAACCGCTTATGGACCCGAGTACATGTACTCGCAATCACAGGGTTTATA 1145
||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1047 TCCTTATGGGGTAACCCCTTATGGACCCGAGTACATGTACTCACAATCACAGGGTTTATA 1106
Query 1146 TAGTCCATACATGGGTCAGCAATACCTTCAGGTCTATGGAGTACCTGGAGCAGTGAATTC 1205
| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1107 TGGTCCATACATGGGTCAGCAGTACCTTCAGGTCTACGGAGTACCTGGAGCAGTGAATTC 1166
Query 1206 ACCCGTTTATCAATACGGGCAACTAAGTCAGACTATTCCTAATGGCCATGGTTATACAGC 1265
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1167 ACCCATTTATCAATACGGGCAACTAAGTCAGACTATTCCTAGTGGCCATGGTTATCCAGC 1226
Query 1266 AGTTCAAGGCTATTCGGTTCCAGGAAGCCATATTCTGCAGCTTGGTGGACCCACTGTCAG 1325
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1227 AGTTCAAGGGTATTCAGTTCCAGGAAGCCATGTTCTGCAGCTTGGTGGACCCACTGTCAG 1286
Query 1326 TACGATGACCACTTCATCTATGCCTGCTCTTCAAGCTCCTTACCCTTCAGGTATACCAGG 1385
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1287 TGCGATGACCACTTCATCTATGTCTGCTCTTCAAGCTCCTTACCCTTCAGGTATACCAGG 1346
Query 1386 CCCTGCTCCCGTACAGTCGCATATCATTGTCCACTCCCCTCAATTTATGCAGAGTACCGC 1445
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1347 CCCTGCTCCTGTACAGTCGCATATCATTGTCCACTCCCCTCAATTTATGCAGAGTAGCGG 1406
Query 1446 TTCTGACCAAACAACAAG-T--T-ATTCTTGAAGACTGAAGAGAAAA-GGAAGTTAAGT- 1499
|||||||||||||||||| | | |||||||| ||| || | ||||| ||||||||||
Sbjct 1407 TTCTGACCAAACAACAAGGTGATTATTCTTGAGGACCGAGG-GAAAAAGGAAGTTAAGCG 1465
Query 1500 -TAGTGAAACTGCTACTGGAGGTGTTGCAGAAGAGGCTTCCTGTTTTATTAAGTCTTGCA 1558
|||||||||||||||| || ||| |||| |||| |||| ||| |||||||||||||||
Sbjct 1466 GTAGTGAAACTGCTACTAGATGTG--GCAGCAGAGACTTCTTGTATTATTAAGTCTTGCA 1523
Query 1559 CGTTATTTATCTTGCATCCTTAAGGTTATGTAAAATAGTCTTGCTCACTGGGAAGGCGCA 1618
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 1524 CATTATTTATCTTGCATCCTTAAGGTTATATAAAATAGTCTTGCTCAC-GGGAAGGCTCA 1582
Query 1619 GCGCAGAAGGaaaaaaaaaaaGCAAAGGAAATTGGAGTGTCAGGGTTTATGCTTCCGTTT 1678
| | | ||||||| ||||| | |||||| ||| |||||||||| ||||||||||
Sbjct 1583 G---A-A-GGAAAAACGAAAAG----G-AAATTGAAGTTTCAGGGTTTACGCTTCCGTTT 1632
Query 1679 TCTTACCCATCCATCAATGTGTATAAAACACAGCCACAAAAAAGCTGCTGGCTCGAGCTT 1738
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1633 TCTTACCCATCCATCAATGTGTATAAAACACAGTCACAAAAAAGCTGCTGGCTCGAGCTC 1692
Query 1739 GGGTTGAGTTTGAAGGCACCATAGCTGGTTTCCCTTGGAGGGGAAGACCAGTAGTAATAA 1798
||||||||||||||||||||||| | ||||||||| |||||| ||||||| |||||||||
Sbjct 1693 GGGTTGAGTTTGAAGGCACCATAACGGGTTTCCCTCGGAGGG-AAGACCATTAGTAATAA 1751
Query 1799 GTTGGTGTACAATATGCATATAT-TTATA--CACACATACACAAGCATATACATATGGTA 1855
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1752 GTTGGTGTACAATATGCATATATATTATATACACACATACACAAGCATATACATATGGTA 1811
Query 1856 GAATCAAAATCTGATTCTTTTCAAGTCTGAAGTCGTAATACCACTACACTTCCTTCAGGT 1915
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1812 GAATCAAAATCTGATTCTTTTCTAGTCTAAAGTCGTAATACCACTACACTTCCTTCAGGT 1871
Query 1916 GCAGGAGTGTAGTGAGTAACATTGATAGGTATATA--GCCTTTGTCTTTAAGTCCTGCAT 1973
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1872 GCAGGAGTGTAGTGAGTAACATTGATAGGTATATATAGCCTTTGTCCCCAAGTCCTGCAT 1931
Query 1974 TGTAAGTAAAACATGTTCATCATGTCCTTT-TCTGTGATTGTGCATATTTAGGGTTCTCT 2032
|||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||| |
Sbjct 1932 TGTAAGTAAAACATGTTCAT---GTCCTTTGTCTGTGACTGTTCATATTTAGGGTTCTTT 1988
Query 2033 CTTCTTCCAT--CTGAACACACTGG-GA-TTGTTTA-CTGAAGCTTACTTCAAAGTATGG 2087
|||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 1989 CTTCTTCCATGTCTGAACACACTGATGAATTGTTTATCTGAAGCTTACTTCAAAGTATGG 2048
Query 2088 AGTAGGCTCTTTTCTCAGAATTTCATTG 2115
||| ||||||||||||||||||||||||
Sbjct 2049 AGTTGGCTCTTTTCTCAGAATTTCATTG 2076
Score = 106 bits (57), Expect = 8e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 AACTTCTTCATCATCACCATCAATGGAATTCCCCAAACCAAACCACCCTTCACCCTAAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AACTTCTTCATCATCACCATCAATGGAATTCCCCAAACCAAACCACCCTTTACCCTAAAA 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79875243765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5