BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76470.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927043 jgi|Araly1|927043|scaffold_202604.1 1616 0.0
> Ahg927043 jgi|Araly1|927043|scaffold_202604.1
Length=1019
Score = 1616 bits (875), Expect = 0.0
Identities = 965/1008 (96%), Gaps = 7/1008 (1%)
Strand=Plus/Plus
Query 24 TTGCTAAAGAGAGA-GACGCCAATGGCTGTAAAGCAAAAGGTCTGTGTTACTGGTGCAGG 82
|||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1 TTGCTAAAGAGA-ACGACGCCAATGGCTGAAAAGCAAAAGGTCTGTGTTACTGGTGCTGG 59
Query 83 AGGGTTTATTGCTTCATGGCTCGTCAAGTTTCTTCTCTCTCGTGGCTACACTGTCCATGG 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGGTTTATTGCTTCATGGCTCGTCAAGTTTCTTCTCTCTCGTGGCTACACTGTCCATGG 119
Query 143 AACCGTTCGAGATCCTTGTGATGAAAAGAATGACCATTTGAGGAAACTGGATAATGCTTC 202
||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 120 AACTGTTCGAAATCCTTGTGATGAAAAGAATGACCATTTGAGGAAATTGGATAATGCTGC 179
Query 203 AAAAAATCTGAAACTTTTCAAGGCAGATTTGTTTGATGATGAAGGTCTTTTCTCAGCCAT 262
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 ACAGAATCTGAAACTTTTCAAGGCAGATTTGTTTGATTATGAAGGTCTTTTCTCAGCCAT 239
Query 263 TGATGGTTGCTCTGGCGTTTTCCATATCGCTTCTCCTGTGCCTTTTGAAGGAGTTCCTCT 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGATGGTTGCTCTGGCGTTTTCCATATCGCTTCTCCTGTGCCTTTTGAAGGAGTTCCTCT 299
Query 323 CACAGAGGAAGAACTGATTAAACCAGCTCTCACTGGCACCAAGAATGTTCTAGAAGCATG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CACAGAGGAAGAACTGATTAAACCAGCTCTCACTGGCACCAAGAATGTTCTAGAAGCATG 359
Query 383 CACAGAAACCAAAGTGCAGAAAGTTGTGGTTGTATCATCAATCGCTGCAGTTGTTTACAA 442
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 360 CACAGAAACTAAAGTGCAGAAAGTTGTGGTTGTATCATCAATTGCTGCAGTTGTCTACAA 419
Query 443 TCCAAAATGGCCTCAAGATGTTGCTAAGGACGAGGATTGTTGGTCAGACACTCAATACCT 502
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 TCCAAAATGGCCTCAAGGTGTTGCTAAGGACGAGGGTTGTTGGTCAGACACTCAATACCT 479
Query 503 TCACTCACTTGAGGGTTATTGGCGTTATTACTATCTTGCCAAAACATTAACGGAACGTGA 562
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 480 TCACTCACTTGAGGGTTATTGGCCTTATTACTATCTGGCCAAAACATTAACGGAACGTGA 539
Query 563 AGCTTTAGAGTGGAGTAAGAGAAACTTTGCTGATGTTGTTACGCTCTGTCCGTCTGTCAT 622
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 AGCTTTAGAGTGGAGGAAGAGAAACTTTGCTGAGGTTGTTACGCTCTGTCCGTCTGTCAC 599
Query 623 TATAGGCCCTAGGCTTCAATCCACGCTTAACTCTAGTAGTTTGGGACTTCTCAAGTTCAT 682
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 600 GATAGGCCCTAGGCTACAATCTACGCTTAACTCTAGTAGTTTGGGACTTCTCAAATTCAT 659
Query 683 AAAAGGTGGTATAAAGTCCTTGTTGAGCGATGAACTGTATCTTGTGGATGTGCGTGATGT 742
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 660 AAAAGGCGGTATAAAGTCCTTGTTGAGCGATCAACTGTATCTTGTGGATGTGCGTGATGT 719
Query 743 TGCGGATGCGCTTTTGTTGGTGTATGAAAATCGAGAAGC-AACAGGAAGATACATATGTA 801
||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||| |
Sbjct 720 TGCGGATGCACTTTTGTTGGTGTATGAAAACCGAGAAGCCAA-AGGAAGATACATATGCA 778
Query 802 ATTCTCATTCACTTTACA-CTGATTCTCTTATGGAGAAGCTCAAGAATATGTATCCTAAA 860
|||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 779 ATTCTCATTCACTTCACATC-GATACTCTTATGGAGAAGCTCAAGAATATGTATCCTAAA 837
Query 861 CGCAACTTCCCTGAAAGTTTCACGGAGGTAAAAGAGAAGGAAGTGAGGCCTCTAAGTGCA 920
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 838 CGCAACTTCCCTGAAAGTTTCACTGAGGTAAAAGAGAAGGAAGTGAGGCCTCTAAGTGCA 897
Query 921 GAGAAGTTGAAAAACTTGGGGTGGAAGTTTAGGCCATTAGAAGAAACCATTGATGATTCT 980
||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 898 GAGAAGTTGAAGAATTTAGGGTGGAAGTTTAGGCCACTAGAAGAAACCATTGATGATTCT 957
Query 981 GTTGTGAGCTTTGAAGCAGCTGGTGATCTTCCAAAGGCATAAGCTTAC 1028
|||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 958 GTTGTGAGCTTTGAAGTAGCTGGTGATCTTCCAAAGGCATA-GCTTAC 1004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5