BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76480.2
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476805 jgi|Araly1|476805|fgenesh2_kg.2__1935__AT1G76480.1 793 0.0
> Ahg476805 jgi|Araly1|476805|fgenesh2_kg.2__1935__AT1G76480.1
Length=578
Score = 793 bits (429), Expect = 0.0
Identities = 526/574 (92%), Gaps = 2/574 (0%)
Strand=Plus/Plus
Query 61 CAGGGTTGCTGATTACAAGATTGGAATCAGAAAAGAATCGTA-TTTTCCATTAAACAGGA 119
||||||| |||||||||||||||||| ||||||||||||| | ||||||||| |||| |
Sbjct 5 CAGGGTTTCTGATTACAAGATTGGAACCAGAAAAGAATCG-ACGTTTCCATTACACAGAA 63
Query 120 CACTCTGCTACTTACTATTATGTCTTGTAGTCTTGGTAAATGGTTTGCCTTGTCTCTGCC 179
||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 64 CACTCTGCTACATACTGTTATGTCTTTTAGTCTTCGTAAATGGTTTGCCTTGTCTCGGCC 123
Query 180 ACGATAACATGTTTGATGTGAAAGCTTTATATGTTGGGAAGGAACTGTGGAGAGAAACTC 239
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 124 ACGAGAACATGTTTGATGTGAAAGCTTTATATGTTGGGAAGGAATTGTGGGGAGAGACTC 183
Query 240 TGCCATTGCAATCGGGTTCTCGCGTTTACAAGTTACAAGGACTGAAGTCGAATTCCTGGT 299
|| |||||||||| ||||| || |||||||||||| ||||||| ||||| ||||| || |
Sbjct 184 TGTCATTGCAATCAGGTTCACGGGTTTACAAGTTAGAAGGACTAAAGTCTAATTCTTGTT 243
Query 300 ATGAAGTGAAGATATCATACCCTGCTTCTATACCAGCTCGGGTCTCGCTGCAACTACTAA 359
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
Sbjct 244 ATGAAGTGAAGATATCATACCCTGCTTCTATACCAGCTCGGTTTTCGCTGAAACTACTTA 303
Query 360 AGAACCATGAAATGGAATTGAAGCTAAACCAAATGAGGAGATTACTAAACACTGAGAAGC 419
|||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 304 AGAACCGTGAAATGGGATTGAAGCTAAACCAGATGAGGAGATTACTAAACACTGAGAAGT 363
Query 420 TGATCTTCAAGGCAGAAAGTCTCAAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGG 479
|||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 364 TGATGTTCAAGGTGGAAAGTCTTGAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGG 423
Query 480 TGACCTTGGAACCCGAGGGGATTGTGGCAATACCAAATTCTAGAGAAAGATATTTTATCA 539
||||| |||||||||||||||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 424 TGACCGTGGAACCCGAGGGGATTGTGGCAATACCAAATTCCAAAGAAAGATCTTTCATCA 483
Query 540 TTTACAACATAGTTTGTGAAGAACAACTCATGGGGATACCTTATTCAAGCTGGTCAGTGG 599
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 484 TTTACAATATAGTTTGTGAAGAACAACTCATGGGCATACCTTATTCAAGCTGGTCAGTGG 543
Query 600 TTCTGTTAGTAGCTTTGTGTCTCGTGGTGTCGTT 633
|| | |||||||||||||||||||||||| ||||
Sbjct 544 TTATATTAGTAGCTTTGTGTCTCGTGGTGGCGTT 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30993931521
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5