BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76490.1
Length=2557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316570 jgi|Araly1|316570|fgenesh1_pm.C_scaffold_2001603 2961 0.0
Ahg480621 jgi|Araly1|480621|fgenesh2_kg.3__3322__AT2G17370.1 516 4e-145
> Ahg316570 jgi|Araly1|316570|fgenesh1_pm.C_scaffold_2001603
Length=1908
Score = 2961 bits (1603), Expect = 0.0
Identities = 1820/1923 (95%), Gaps = 21/1923 (1%)
Strand=Plus/Plus
Query 42 atgaagaaaaaGCAAGCTGGTCCCCAACAGACATGCGAGTTCGTCTCCTATAAAACTTTG 101
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 ATGAAGAAAAAGCAAGCTGGTCCCCAACAGACATGCGGGTTCGTCTCCTATAAAAC-TTG 59
Query 102 -TTAATCTCTCCTTCACACTTATCACGCCACCTCACCACctctctcctctctcctctctc 160
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 60 TTTAATCTCTCCTTCACACTTATCACGCCACCT---CACCTC-CTCCTCTCTCCTCTCTC 115
Query 161 tcCCCCCTGGAGAGATTATTCATTCCCTCCAATGGATCTCCGTCGGAGGCCTCCTAAACC 220
| ||| |||||||| ||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 116 T-CCCTCTGGAGAG---ATT-ATTCCCTCCAATGGATCTCCGACGGAGGCCTCCTAAGCC 170
Query 221 ACCGGTTACCAACAACAACAACTCCAACGGATCTTTCCGTTCTTATC-AGCCTCGCACTT 279
||||||| |||||| || |||| ||||||||||||||||||||| | || |||||||
Sbjct 171 ACCGGTT---AACAAC-AC--CTCCGACGGATCTTTCCGTTCTTATCAAACC-CGCACTT 223
Query 280 CCGATGACGATCATCGTCGCCGGGCTACAACAATTGCTCCTCCACCGAAAGCATCCGACG 339
||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 224 CCGATGACGATCACCGTCGCCGGACTACAACGATTGCTCCTCCACCTAAAGCATCCGATG 283
Query 340 CGCTTCCTCTTCCGTTATATCTCACAAACGCCGTTTTCTTCACGCTCTTCTTCTCCGTCG 399
||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 284 CGCTTCCTCTTCCATTATATCTGACGAACGCCGTCTTCTTCACGCTCTTCTTCTCCGTCG 343
Query 400 CGTATTACCTCCTCCACCGGTGGCGTGACAAGATCCGTTACAATACGCCTCTTCACGTCG 459
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CGTATTATCTCCTCCACCGGTGGCGTGACAAGATCCGTTACAATACGCCTCTTCACGTCG 403
Query 460 TCACTATCACAGAACTCGGCGCCATTATTGCTCTCATCGCTTCGTTTATCTATCTCCTAG 519
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 404 TCACTATCACAGAACTCGGCGCCATTATTGCTCTAATCGCTTCGTTTATCTATCTCCTAG 463
Query 520 GGTTTTTTGGTATTGACTTTGTTCAGTCATTTATCTCACGTGCCTCTGGTGATGCTTGGG 579
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 464 GTTTTTTTGGTATTGACTTTGTTCAGTCATTTATCTCACGCGCCTCCGGTGATGCTTGGG 523
Query 580 ATCTCGCCGATACGATCGATGATGATGACCACCGCCTTGTCACGTGCTCTCCACCGACTC 639
||||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 524 ATCTCGCGGATACGATCGATGAAGACGACCACCGCCTCGTCACGTGCTCTCCACCGACTC 583
Query 640 CGATCGTTTCCGTTGCTAAATTACCTAATCCGGAACCTATTGTTACCGAATCGCTTCCTG 699
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 584 CGATCGTTTCCGTTGCTAAGTTACCAAATCCGGAGCCTATTGTTACCGAATCGCTTCCTG 643
Query 700 AGGAAGACGAGGAGATTGTGAAATCGGTTATCGACGGAGTTATTCCATCGTACTCGCTTG 759
||||||||||||||||||||||||| ||||||| |||||| || |||||||||||||| |
Sbjct 644 AGGAAGACGAGGAGATTGTGAAATCCGTTATCGGCGGAGTGATCCCATCGTACTCGCTCG 703
Query 760 AATCTCGTCTCGGTGATTGCAAAAGAGCGGCGTCGATTCGTCGTGAGGCGTTGCAGAGAG 819
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 704 AATCTCGTCTCGGTGATTGCAAAAGAGCGGCGTCGATTCGGCGGGAGGCGTTGCAGAGAG 763
Query 820 TCACCGGGAGATCGATTGAAGGGTTACCGTTGGATGGATTTGATTATGAATCGATTTTGG 879
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 764 TCACCGGGAGATCGATGGAAGGATTACCGTTGGATGGATTTGATTATGAATCGATTTTGG 823
Query 880 GGCAATGCTGTGAGATGCCTGTTGGATACATTCAGATTCCTGTTGGGATTGCTGGTCCAT 939
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||
Sbjct 824 GGCAATGCTGTGAGATGCCTGTCGGATATATTCAGATTCCTGTGGGGATTGCTGGACCAT 883
Query 940 TGTTGCTTGATGGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTTGTTTGGTTG 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TGTTGCTTGATGGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTTGTTTGGTTG 943
Query 1000 CTAGCACTAACAGAGGCTGCAAGGCTATGTTTATCTCTGGTGGCGCCACCAGTACCGTTC 1059
|||||||||||||||||||||| || |||| |||||| ||||| ||||||||||| ||||
Sbjct 944 CTAGCACTAACAGAGGCTGCAAAGCCATGTATATCTCCGGTGGAGCCACCAGTACGGTTC 1003
Query 1060 TTAAGGACGGTATGACCCGAGCACCTGTTGTTCGGTTCGCTTCGGCGAGACGAGCTTCGG 1119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1004 TTAAGGACGGTATGACCCGAGCACCTGTCGTTCGGTTCGCTTCGGCGAGACGAGCTTCCG 1063
Query 1120 AGCTTAAGTTTTTCTTGGAGAATCCAGAGAACTTTGATACTTTGGCAGTAGTCTTCAACA 1179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1064 AGCTTAAGTTTTTCTTGGAGAATCCAGAGAACTTTGATACTTTGACAGTAGTCTTCAACA 1123
Query 1180 GGTCGAGTAGATTTGCAAGACTGCAAAGTGTTAAATGCACAATCGCGGGGAAGAATGCTT 1239
||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1124 GGTCGAGTAGATTCGCAAGATTGCAAAGTGTGAAATGCACAATCGCGGGGAAGAATGCTT 1183
Query 1240 ATGTAAGGTTCTGTTGTAGTACTGGTGATGCTATGGGGATGAATATGGTTTCTAAAGGTG 1299
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1184 ATGTAAGGTTCTGTTGTAGTACTGGTGATGCTATGGGGATGAATATGGTATCTAAAGGTG 1243
Query 1300 TGCAGAATGTTCTTGAGTATCTTACCGATGA-TTTCCCTGACATGGATGTGATTGGAATC 1358
||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1244 TGCAGAATGTTCTCGAATATCTTACCGATGATTTTCCC-GACATGGATGTGATTGGAATC 1302
Query 1359 TCTGGTAACTTCTGTTCGGACAAGAAACCTGCTGCTGTGAACTGGATTGAGGGACGTGGT 1418
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TCTGGTAATTTTTGTTCGGACAAGAAACCTGCTGCTGTGAACTGGATTGAGGGACGTGGC 1362
Query 1419 AAATCAGTTGTTTGCGAGGCTGTAATCAGAGGAGAGATCGTGAACAAGGTCTTGAAAACG 1478
|||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1363 AAATCAGTTGTTTGTGAGGCTGTAATCAAAGGAGAGATCGTGAACAAGGTCTTAAAAACG 1422
Query 1479 AGCGTGGCTGCTTTAGTCGAGCTCAACATGCTCAAGAACCTAGCTGGCTCTGCTGTTGCA 1538
|||||||||||||| ||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 1423 AGCGTGGCTGCTTTGGTCGAGCTCAATATGCTCAAGAATCTTGCGGGCTCTGCTGTTGCA 1482
Query 1539 GGCTCTCTAGGTGGATTCAACGCTCATGCCAGTAACATAGTGTCTGCTGTATTCATAGCT 1598
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1483 GGCTCTCTAGGTGGGTTCAACGCTCATGCCAGTAACATAGTCTCTGCTGTGTTCATAGCT 1542
Query 1599 ACTGGCCAAGATCCAGCTCAAAACGTGGAGAGTTCTCAATGCATCACCATGATGGAAGCT 1658
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1543 ACTGGCCAAGATCCAGCTCAAAACGTGGAGAGCTCTCAATGCATCACCATGATGGAAGCT 1602
Query 1659 ATTAATGACGGCAAAGATATCCATATCTCAGTCACTATGCCATCTATCGAGGTGGGGACA 1718
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATTAACGACGGCAAAGATATCCATATCTCAGTCACTATGCCATCTATCGAGGTGGGGACA 1662
Query 1719 GTGGGAGGAGGAACACAGCTTGCATCTCAATCAGCGTGTTTAAACCTGCTCGGAGTTAAA 1778
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1663 GTGGGAGGAGGAACACAGCTTGCATCTCAATCAGCGTGTTTAAACCTGCTGGGAGTGAAA 1722
Query 1779 GGAGCAAGCACAGAGTCGCCGGGAATGAACGCAAGGAGGCTAGCGACGATCGTAGCCGGA 1838
||||| |||| ||||||||||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1723 GGAGCGAGCAAAGAGTCGCCGGGAATGAACTCAAGGAGGCTAGCGACGATAGTGGCCGGA 1782
Query 1839 GCAGTTTTAGCTGGAGAGTTATCTTTAATGTCAGCAATTGCAGCTGGACAGCTTGTGAGA 1898
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1783 GCAGTTTTAGCGGGAGAGTTATCTCTAATGTCAGCAATTGCAGCTGGACAGCTTGTGAGA 1842
Query 1899 AGTCACATGAAATACAATAGATCCAGCCGAGACATCTCTGGAGcaacgacaacgacaaca 1958
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1843 AGTCACATGAAATACAACAGATCCAGCCGAGACATCTCTGGAGCAACGACAACAACAACA 1902
Query 1959 aca 1961
|||
Sbjct 1903 ACA 1905
> Ahg480621 jgi|Araly1|480621|fgenesh2_kg.3__3322__AT2G17370.1
Length=2085
Score = 516 bits (279), Expect = 4e-145
Identities = 960/1277 (75%), Gaps = 94/1277 (7%)
Strand=Plus/Plus
Query 701 GGAAGACGAGGAGATTGTGAAATCGGTTATCGACGGAGTTATTCCATCGTACTCGCTT-G 759
|||||| || || || || |||||||| ||||||||| ||| || |||||| | || |
Sbjct 645 GGAAGATGAAGAAATCGTTAAATCGGTGATCGACGGAACTATCCCTTCGTACAC-ATTGG 703
Query 760 A-ATCTCGTCTCGGTGATTGCAAAAGAGCGGC-GTCGATTCGTCGTGAGGC-GTTGCAGA 816
| | | || || ||||||||| |||| || | ||||| | | || || ||| ||||
Sbjct 704 AGA-CGAAACTTGGAGATTGCAAACGAGCAGCAG-CGATTAGAAGAGAAGCGGTT-CAGA 760
Query 817 -GAGTCACCGGGAGATCGATTGAA-GGGT-TACCGTTGGATGGATTTGATTATGAA-TCG 872
|| | ||||| | ||| || || ||| | || ||||| || |||||||| || ||
Sbjct 761 GGA-TAACCGGTAAATC-CTT-AACCGGTCTTCCATTGGAAGGTTTTGATTA-CAATTCA 816
Query 873 ATTTTGGGGCAATGCTGTGAGATGCCTGTTGGATACATTCAGATTCCTGTTGGGATTGCT 932
|| ||||||||||||||||||||||| ||||| || ||||||| || || |||||||||
Sbjct 817 ATCTTGGGGCAATGCTGTGAGATGCCAGTTGGGTATGTTCAGATCCCAGTGGGGATTGCT 876
Query 933 GGTCCATTGTTGCTTGAT-GGTTATGAGTACTCTGTTCCTATGGCTACAACCGAAGGTTG 991
|| || ||||| || ||| || | |||||| || || || ||||||||||| ||||||||
Sbjct 877 GGACCTTTGTTACTCGATGGGAT-TGAGTATTCAGTGCCAATGGCTACAACAGAAGGTTG 935
Query 992 TTTGGTTGCTAGCACTAACAGAGGCTGCAAGGCTATGTTTA--TCTCTGGTGGCGCCACC 1049
|||||||||||| || || ||||| | || |||| || | | |||||||| ||
Sbjct 936 TTTGGTTGCTAGTACCAATAGAGGTTTTAAAGCTA--TTCACTTGTCTGGTGGTGCTTTT 993
Query 1050 AGTACCGTTC-T-T-AAGGACGGTATGACCCGAGCACCTGTTGTTCGGTTCGCTTCGGCG 1106
||| |||| | | || || | ||||| |||| || |||||| | ||| |||| ||
Sbjct 994 AGT---GTTCTTATGAAAGATGCCATGACTAGAGCTCCAGTTGTTAGATTCCCTTCTGCA 1050
Query 1107 AGACGAGCT--TCGGAGCTTAAGTTTT-TCTTGGAGAATCCAGAGAACTTT-GATACTTT 1162
||| ||||| || | | | ||||| |||| || |||| | || ||| || | ||
Sbjct 1051 AGAAGAGCTGCTC-TTG-TCATGTTTTATCTTCAAG-ATCCTGCTAA-TTTCGAGAGATT 1106
Query 1163 GGCAGT-AGTCTTCAACAGGTCGAGTAGATTTGCAAGACTGCAAAGTGTTAAATGCACA- 1220
| | | | | ||||| | |||||||||||||| || || || ||| ||| ||| | |
Sbjct 1107 GTCTCTCA-TTTTCAATAAATCGAGTAGATTTGCTAGGCTTCAGAGTATTACATGTA-AG 1164
Query 1221 ATCGCGGGGAA-GAATGCT-TATGTAAGGTTCTG-TTGTAGTACTGGTGATGCTATGGGG 1277
|| || |||| |||| || ||| ||||| || ||||||||||||||||||||||||
Sbjct 1165 ATTGC-TGGAAGGAAT-CTCTATCCGAGGTT-TGCGTGTAGTACTGGTGATGCTATGGGG 1221
Query 1278 ATGAATATGGTTTCTAAAGGTGTGCAGAATGTTCTTG-AGTATCTTACCGAT-GA-TTTC 1334
||||||||||| || |||||||| |||||||| |||| | | | | | || || ||||
Sbjct 1222 ATGAATATGGTCTCCAAAGGTGTTCAGAATGT-CTTGGATTTTGTAAA-GAGCGAGTTTC 1279
Query 1335 CCTGACATGGATGTGATTGGAATCTCT-GGTAACTT-CTGTTCGGACAAGAAACCTGCTG 1392
| |||||||||||| ||||| |||||| || || || ||||||||||||||| || | |
Sbjct 1280 C-TGACATGGATGTTATTGGCATCTCTTGG-AA-TTACTGTTCGGACAAGAAGGCTTCGG 1336
Query 1393 CTGTGAACTGGATTGAGGGACGTGGTAA--ATCAGTTGTTTGCGAGGC-TGTAATCAGAG 1449
|||| |||||||| || ||||||||||| || | |||| || || || | || | | ||
Sbjct 1337 CTGTAAACTGGATCGAAGGACGTGGTAAGCAT-A-TTGTATGTGAAGCCTTTATT-A-AG 1392
Query 1450 GA-GAGATCGTGAACAAGGTCTTGAAAACGAGCGTGGCTGCT-TTAGTCGAGCTCAACAT 1507
| ||||| ||| | || || ||||| || ||||| | ||| || || ||||| ||||
Sbjct 1393 GCTGAGATTGTGGAGAAAGTGTTGAAGACTAGCGTTGAGGCTCTT-GTAGAGCTTAACAC 1451
Query 1508 GCTCAAGAACCTAGCTGGCTCTGCTGTTGCAGGCTCTCTAGGTGGATTCAACGCTCATGC 1567
|||||||||||| ||||| || || | || || ||||| || || ||||| ||||||||
Sbjct 1452 GCTCAAGAACCTTGCTGGTTCAGCCATGGCGGGTTCTCTTGGAGGGTTCAATGCTCATGC 1511
Query 1568 CAGTAACATAGTGTC--TGCTGTATTCATAGCTACTGGCCAAGATCCAGCTCAAAACGTG 1625
|| || || |||| |||||| ||||| || ||||| ||||| || ||||||||||||
Sbjct 1512 AAGCAATAT--TGTCAGTGCTGTTTTCATCGCCACTGGGCAAGACCCTGCTCAAAACGTG 1569
Query 1626 GAGAGTTCTCAATGCATCACCATGATGGAAGCTATTAATGACGGCAAAGATATCCATATC 1685
||||| || || || |||||| |||| |||||| || | | ||| || | ||||||
Sbjct 1570 GAGAGCTCACACTGTATCACCCTGATTGAAGCTG--AA-G--G-CAACGACCTTCATATC 1623
Query 1686 TCAGTCA-CTATGCCAT-CTATCGAGGTGGGGACAGTGGGAGGAGGAACACAGCTTGCAT 1743
|| || | | ||||| | | || ||||| || || || ||||| || ||||| |||||||
Sbjct 1624 TCTGT-ATCAATGCCTTGC-ATTGAGGTTGGTACTGTTGGAGGTGGTACACAACTTGCAT 1681
Query 1744 CTCAATCAGCGTGTTTAAACCTGCTCGGAGTTAAAGGAGCAAGCA-CAGAGTCGCCGGGA 1802
| |||||||| ||||| || |||||||| || |||||| ||| || | ||| || |||
Sbjct 1682 CACAATCAGCTTGTTTGAATCTGCTCGGTGTGAAAGGATCAAACAAC-GAGGAACCTGGA 1740
Query 1803 AT-GAACGCA-AGGAGGCTAGCGACGA-TCGTAGCCGGAGCAGTT-TTAGCTGGAGAG-T 1857
| ||||||| || | || || | || |||| || || | ||| || || |||||| |
Sbjct 1741 -TCGAACGCACAGCAA-CTGGCAA-GAATCGTGGCTGGTTCGGTTCTT-GCAGGAGAGCT 1796
Query 1858 TATCTTTAATGTCAGCAATTGCAGCTGGACAGCTTGTGA-GAAGTCACATGAAATACAAT 1916
| || ||||||| || |||||||||||||||||||||| || | ||||||||||||||
Sbjct 1797 T-TCACTAATGTCTGCTATTGCAGCTGGACAGCTTGTGAAGA-GCCACATGAAATACAAC 1854
Query 1917 AGATCCAGCCGAGACAT 1933
||||||||| |||||||
Sbjct 1855 AGATCCAGCAGAGACAT 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96406410095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5