BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76500.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476807 jgi|Araly1|476807|fgenesh2_kg.2__1937__AT1G76500.1 1243 0.0
> Ahg476807 jgi|Araly1|476807|fgenesh2_kg.2__1937__AT1G76500.1
Length=870
Score = 1243 bits (673), Expect = 0.0
Identities = 827/895 (92%), Gaps = 35/895 (4%)
Strand=Plus/Plus
Query 3 GCCATGGACGGTGGTTACGATCAATCCGGAGGAGCTTCTAGATACTTTCACAACCTCTTC 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCATGGACGGTGGTTACGATCAAACCGGAGGAGCTTCTAGATACTTTCACAACCTCTTC 60
Query 63 AGGCCTGAGCTTCAtcaccagcttcaacctcagcctcaacttcaccctttgcctcagcct 122
|||||||||||||| ||||||||||||||||||||||||||||| || || | ||||
Sbjct 61 AGGCCTGAGCTTCAACACCAGCTTCAACCTCAGCCTCAACTTCAGCC-TT---T--GCCT 114
Query 123 cagcctcaacctcagcctcagcagcagaattcagATGATGAATCTGACTCCAACAAGGAT 182
||| | || ||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 115 CAG---C--CC-CAG---CAGCAGC--AA-TCAGATGATGAATCTGACTCCAACAAGGAT 162
Query 183 CCGGGTTCCGACCCAGTTACCTCTGGTTCAA--CC-GGGAAACGTCCACGTGGACGTCCT 239
||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 163 CCGGGTTCCGACCCAGTTACCTCGGGTTCAACTCCTGGAAAACGTCCACGTGGACGTCCT 222
Query 240 CCGGGATCCAAGAACAAGCCGAAGCCACCGGTGATAGTGACTAGAGATAGCCCCAACGTG 299
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 223 CCGGGATCTAAGAACAAGCCGAAACCACCGGTGATAGTTACAAGAGATAGCCCCAACGTG 282
Query 300 CTTAGATCTCATGTTCTTGAAGTCTCATCTGGAGCCGACATAGTCGAGAGCGTTACCACT 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 283 CTTAGATCTCATGTTCTTGAAGTCTCATCTGGAGCCGACATAGTTGAGAGCGTTACCACT 342
Query 360 TACGCTCGCAGGAGAGGAAGAGGAGTCTCCATTCTCAGTGGTAACGGCACGGTGGCTAAC 419
||||||||| ||||||| || || |||||||| |||||||||||||||||||||||||||
Sbjct 343 TACGCTCGCCGGAGAGGGAGGGGTGTCTCCATACTCAGTGGTAACGGCACGGTGGCTAAC 402
Query 420 GTCAGTCTCCGGCAGCCGGCAACGACAGCGGCTCATGGGGCAAATGGTGGAACCGGAGGT 479
||||||||||| ||||| | | |||||||||||||||| ||||||||||||||||||
Sbjct 403 GTCAGTCTCCGTCAGCC-G----G-CAGCGGCTCATGGGGCTAATGGTGGAACCGGAGGT 456
Query 480 GTTGTGGCTCTACATGGAAGGTTTGAGATACTTTCCCTCACAGGTACGGTGTTGCCGCCC 539
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 457 GTTGTGGCTTTACATGGAAGGTTTGAGATACTTTCCCTCACCGGTACGGTGTTACCTCCG 516
Query 540 CCTGCGCCGCCAGGATCCGGTGGTCTTTCTATCTTTCTTTCCGGCGTTCAAGGTCAGGTG 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CCTGCGCCGCCGGGATCCGGTGGTCTTTCTATCTTTCTTTCCGGCGTTCAAGGTCAGGTG 576
Query 600 ATTGGAGGAAACGTGGTGGCTCCGCTTGTGGCTTCGGGTCCAGTGATACTAATGGCTGCA 659
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 ATCGGAGGAAACGTGGTGGCTCCGCTTGTGGCTTCGGGTCCAGTGATACTAATGGCTGCA 636
Query 660 TCGTTCTCTAATGCAACTTTCGAAAGGCTTCCCCTTGAAGATGAaggaggagaaggtgg- 718
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 637 TCGTTCTCTAATGCAACTTTCGAAAGACTTCCGCTTGAAGATGAAGGAGGAGAAGG-GGC 695
Query 719 ag-agg-ga-g--g-agaagttggagagggaggaggaggagaaggTGGTCCACCGCCGGC 772
|| ||| || | | |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 696 AGGAGGAGAAGTTGGAGAAGTTGGAGAAGGAGGAGGAGGAGGAGGTGGTCCACCGCCGGC 755
Query 773 CACGTCATCATCACCACCATCTGGAGCCGGTCAAGGACAGTTAAGAGGTAACATGAGTGG 832
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 756 CACGTCATCATCACCACCTTCTGGAGCCGGTCAAGGACAGCTAAGAGGTAACATGAGTGG 815
Query 833 TTATGATCAGTTTGCCGGTGATCCTCATTTGCTTGGTTGGGGAGCCGCAGCCGCA 887
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 816 CTATGATCAGTTTTCCGGTGATCCTCATTTGCTTGGTTGGGGAGCCGCTGCCGCA 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5