BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76510.3
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476809 jgi|Araly1|476809|fgenesh2_kg.2__1939__AT1G76510.1 1199 0.0
Ahg472327 jgi|Araly1|472327|fgenesh2_kg.1__2281__AT1G20910.1 575 4e-163
> Ahg476809 jgi|Araly1|476809|fgenesh2_kg.2__1939__AT1G76510.1
Length=1667
Score = 1199 bits (649), Expect = 0.0
Identities = 801/872 (92%), Gaps = 20/872 (2%)
Strand=Plus/Plus
Query 42 TTTTGATCTGCATATCTCTCCGTTTAATTGAT-ATCTTTCCGTTTCTCGCT-TCTTTTTC 99
||||||||||| |||||||||||| ||||||| || ||||||||||||||| | ||||||
Sbjct 1 TTTTGATCTGCCTATCTCTCCGTTAAATTGATAATTTTTCCGTTTCTCGCTCTTTTTTTC 60
Query 100 TCCGCCGGCGTCCTTCCATTTCGCCGGCTGCTATCGAACCCTAACCCGCGACGACTCCAC 159
|||||||||||||||| |||||||||||||||| |||||||| |||| || | |||||||
Sbjct 61 TCCGCCGGCGTCCTTCAATTTCGCCGGCTGCTAACGAACCCT-ACCC-CG-CCACTCCAC 117
Query 160 CGTCTCCGGCGTCTTCTTCTTCCGGCGAAACCGGTAACCGTATCTTTTGTTTC-TATAGA 218
||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| | ||||
Sbjct 118 CGTCTCCGGCGTCGTATTCTTCCGGCGAAACCGGTAACCATATCTTTGGTTTCTTCTAGA 177
Query 219 ATTAGCTTCATGATGGCGGATACTGAAATGCAAGAGCAAGATGTG-C--C--GT-CTGGT 272
|||||||| |||||||||| || ||||||||||||||||||||| | | || ||| |
Sbjct 178 ATTAGCTTTTTGATGGCGGACACCGAAATGCAAGAGCAAGATGTGCCTTCTGGTGCTGAT 237
Query 273 ACCAAAGGTGTTGT-----A-GAGGAGCCTTCAGAACTAGAGAAAGACCTAAACTCTATT 326
|||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||
Sbjct 238 ACCAAAGGTGTTGTAGAGGAGGAGGAGCCTTCAGAACCAGAGAAAGACCAAAACTCTATT 297
Query 327 GAAAGACCTAAGTCCCCTGTTC-CAGAGGATACGACTCATACTTTGGATAGTGATGTTCA 385
||| ||||| ||||||||||| | ||||||| |||||||||| |||| |||||||||||
Sbjct 298 CAAATACCTACGTCCCCTGTTCTC-GAGGATAAGACTCATACTCTGGACAGTGATGTTCA 356
Query 386 TTTATCTGATGCTCCCATTGCTAATCAAATTGAGGCTAATGAAGAGGTTGGTGGTCAGAA 445
||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||
Sbjct 357 TTTATCTGATGCTCCCATTACTAATCAAACTGAGGCTAATGAAGAGGTAGGTGGTCACAA 416
Query 446 CAGTGTTGATGGGAGGAATGGTGATGTTGATCAGTCTGAAAAGAAGATTACTAGTGATGG 505
|||||||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct 417 CAGTGTTGATGGCAAGAATGGTGATGTCGATCAGTCTGAAAAGAAGGTTATTAGTGATGG 476
Query 506 CGGTCAAGAGGAGACAACACTTGGGGAATCAAATCCTTTGAAGGGGGATCCGTCGAGTCC 565
|||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||
Sbjct 477 CGGTCAAGAGGAGACAACACTTGGGGAATCAATTCCTCTCAAGGGGGAACCGTCGAGTCC 536
Query 566 TCATGTTCCTGAAGAAAGTGTTAAGAAGTGGAAGACATGGTTGTTGAGTGATGCTGAGGC 625
|||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 GCATGTTCCAGAAAAAAGTGTTAAGAAGTGGAAGACATGGTTGTTGAGTGATTCTGAGGC 596
Query 626 CAGGGAAGTTGATGAAGCAGGGGCACCACAGGATCAAGAGGCGTTTATTAAAGAAGTGGA 685
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 597 CAGGGAAGTTGATGAAGCAGGGACACCACCGGATCAAGAGGCGTTTATTAAAGAAGTGGA 656
Query 686 GGCCTTCAACAAGGAGAATTTCCTGGAATTTAAAGCCCCAAAGTTTTACGGACAGCCCTT 745
||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 657 GGCCTTCCACAAGGAGAATTTCCTTGAATTTAAAGCCCCAAAGTTTTATGGACAGCCCTT 716
Query 746 AAATTGTCTCAAGCTTTGGAGAGCCGTTATCAAGTTAGGTGGCTACGATGTGGTCACCAC 805
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 717 AAATTGTCTCAAGCTATGGAGAGCCGTCATCAAGTTAGGTGGCTACGACGTGGTCACCAC 776
Query 806 ATCTAAGCTATGGCGGCAAGTTGGAGAATCGTTCCATCCTCCAAAAACATGCACTACAGT 865
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 777 ATCTAAGCTATGGCGGCAAGTTGGAGAATCCTTCCATCCTCCAAAAACATGCACTACAGT 836
Query 866 CTCCTGGACATTCCGCATTTTCTATGAAAAGG 897
||||||||||||||||||||||||||||||||
Sbjct 837 CTCCTGGACATTCCGCATTTTCTATGAAAAGG 868
Score = 1068 bits (578), Expect = 0.0
Identities = 614/632 (97%), Gaps = 0/632 (0%)
Strand=Plus/Plus
Query 966 GCACTTTTGGAGTATGAGAAGCATTTAAGGCAAAATGGTGAGCTTAACCTTCCTGGTTCA 1025
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 868 GCACTTTTGGAGTATGAGAAGTATTTAAGGCAAAATGGTGAGCTTAACCTTCCTGGTTCA 927
Query 1026 GCTTCTCTTCCGTCTTCAGGCATTGAAAAGGAGGCAAGTAGCCATCAAGCTTCAGGGTCA 1085
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 928 GCTTCTCTTCCGTCTTCAGGCCTTGAAAAGGAGGCAACTAGCCATCAAGCTTCAGGGTCA 987
Query 1086 GGCAGAACAAGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGCATTCTCAGCGCCTT 1145
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGCAGAGCACGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGCATTCTCAGCGCCTT 1047
Query 1146 CTTGGATCTGGGGAGGTTACTGAGCCTATTGTTAAGGAGAAAGGCTTGAATTCAACCCCA 1205
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1048 CTTGGATCTGGGGAGGTTACTGAGCCTATTGTTAAGGATAAAGGCTTGAATTCAACCCCA 1107
Query 1206 AAGCAAAAGAACCTCAAAAACATTGGTGTGCAGAAACAAAAAACAACAACCGGCATGGAC 1265
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1108 AAGCAAAAAAACCTCAAAAACATTGGTGTGCAGAAACAAAAGACAACACCCGGCATGGAC 1167
Query 1266 CTTGTTTTTTCACACGAATCAGAAAAACAGTCAACTGCCGAGGTTATAGATGTTGGACCC 1325
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 CTTGTTTTTTCACATGAATCAGAAAAACAGTCAACTGCCGAGGTTATAGATGTTGGACCC 1227
Query 1326 CCTGCAGACTGGGTGAAGATCAATGTCAGAGAAACTAAAGACTGCTTTGAGATATTTGCC 1385
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CCTGCAGACTGGGTGAAGATAAATGTCAGAGAAACTAAAGACTGCTTTGAGATATTTGCC 1287
Query 1386 CTGGTACCTGGACTTCTTCGCGAAGAGGTCCGTGTTCAGTCAGACCCTGCAGGGCGGCTA 1445
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1288 CTAGTACCTGGACTTCTTCGCGAAGAGGTCCGCGTTCAGTCAGACCCTGCAGGGCGGCTA 1347
Query 1446 GTTATAGCAGGCCAACCTGAGCAACTTGACAATCCTTGGGGAATCACACCCTTCAAAAAG 1505
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1348 GTTATAGCAGGCCAACCTGAGCAACTTGACAATCCATGGGGAATCACACCCTTCAAAAAG 1407
Query 1506 GTTGTGAACTTTCCCGCAAGAATCGATCCGCTGCACACGTCAGCGGTTGTGAGCCTGCAT 1565
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1408 GTTGTGAACTTTCCAGCAAGAATCGATCCACTTCACACGTCAGCGGTTGTGAGCCTACAT 1467
Query 1566 GGTCGACTGTTTGTGCGAGTCCCATTTGAGCA 1597
||||||||||||||||||||||||||||||||
Sbjct 1468 GGTCGACTGTTTGTGCGAGTCCCATTTGAGCA 1499
> Ahg472327 jgi|Araly1|472327|fgenesh2_kg.1__2281__AT1G20910.1
Length=1619
Score = 575 bits (311), Expect = 4e-163
Identities = 536/643 (83%), Gaps = 22/643 (3%)
Strand=Plus/Plus
Query 966 GCACTTTTGGAGTATGAGAAGCATTTAAGGCAAAATGGTGAGCTTAACCTTCCTGGTTCA 1025
|||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 730 GCACTTTTGGAGTACGAAAAGTGTTTAAGGAAAAATGGTGAGCTTAACCTTCCTGGTTCA 789
Query 1026 GC-TTCTCTTCCGTCTT-CAGGCATTGA-AAAGGAGGCAAGTAGCCATCAAGCTTCAGGG 1082
| || | || ||||| || || | || ||| ||||||||||||||||||| | |||||
Sbjct 790 ACATT-GCCTCTGTCTTCCA-GCCTCGAGAAA-GAGGCAAGTAGCCATCAAGGTCCAGGG 846
Query 1083 TCAGGCAGAACAAGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGCATTCTCAGCGC 1142
|||||||| || |||||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 847 TCAGGCAGGGCACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCGC 906
Query 1143 CTTCTTGGATCTGGGGAGGTTACTGAGCCTA-TTGTTAAGGAGAAAGGCTTGAATTCAAC 1201
||| |||||||||| |||| ||||| ||| | |||||||||| || ||||| || |||||
Sbjct 907 CTTGTTGGATCTGGAGAGGGTACTGCGCC-AGTTGTTAAGGATAAGGGCTTAAACTCAAC 965
Query 1202 CCCAAAGCAAAAGAACCTCAAAAACATTGGTG-TGCAGAAACAAAAAACAACAACCG-GC 1259
||||||||| ||||| ||||||| |||||| | |||| ||||| ||| || ||| | ||
Sbjct 966 CCCAAAGCATAAGAAACTCAAAAGCATTGG-GCTGCAAAAACACAAACCA-CAAACTAGC 1023
Query 1260 ATGGACCTTGTTT-TTTCACACGAATCAGAAAAACAGTCAACTGCCGAGGTTATAGATGT 1318
||||||||| ||| ||||| | ||| | || |||||||| |||| |||||| | |||||
Sbjct 1024 ATGGACCTT-TTTGTTTCAAATGAAGCTGACAAACAGTCGGCTGCTGAGGTTGTTGATGT 1082
Query 1319 TGGACCCCCTGCAGACTGGGTGAAGATCAATGTCAGAGAAACTAAAGACTGCTTTGAGAT 1378
|||||||| ||| |||||||||||||| ||||||| ||||||||| || | ||| |||||
Sbjct 1083 TGGACCCCTTGCTGACTGGGTGAAGATAAATGTCAAAGAAACTAAGGATTCCTTCGAGAT 1142
Query 1379 ATTTGCCCTGGTACCTGGACTTCTTCGCGAAGAGGTCCGTGTTCAGTCAGACCCTGCAGG 1438
||||||| |||||||||||||||||||| ||||||| || |||| ||||| ||||| ||
Sbjct 1143 ATTTGCCTTGGTACCTGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGC-GG 1201
Query 1439 GC--GGCTAGTTATAGCAGGCCAACCTGAGCAACTTGACAATCCTTGGGGAATCACACCC 1496
| || | |||||| ||||||| || ||||| ||||||||||||||||| || ||||||
Sbjct 1202 GAAAGG-TGGTTATAACAGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGCATTACACCC 1260
Query 1497 TTCAAAAAGGTTGT-GAACTT-TCCCGCAAGAATCGATCCGCTGCACACGTCAGCGGTTG 1554
||||||||| |||| || ||| || ||||||||||||||||| |||| || |||||
Sbjct 1261 TTCAAAAAGATTGTTGA-CTTATCA-GCAAGAATCGATCCGCTTAACACATCTGCGGTCA 1318
Query 1555 TGAGCCTGCATGGTCGACTGTTTGTGCGAGTCCCATTTGAGCA 1597
||||| ||||||| || |||| | ||||| || ||||||||
Sbjct 1319 TGAGCATGCATGGCCGGTTGTTCATACGAGTTCCGTTTGAGCA 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5