BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76520.1
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927049 jgi|Araly1|927049|scaffold_202610.1 1832 0.0
Ahg313001 jgi|Araly1|313001|fgenesh1_pm.C_scaffold_1001781 649 0.0
> Ahg927049 jgi|Araly1|927049|scaffold_202610.1
Length=1218
Score = 1832 bits (992), Expect = 0.0
Identities = 1128/1194 (94%), Gaps = 7/1194 (1%)
Strand=Plus/Plus
Query 203 GCGTTGATAGTAAAAAGATGGTGAAGCTTTTGGAGCTGTTCATAACTTCATCAAAACCAG 262
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 6 GCGTTAATAATAAAAAGATGGTGAAGCTTTTGGAGCTGTTCATAACTTCATCGAAACCAG 65
Query 263 TCGTTGAGATTCTGTTGATAACATCAGTCGGATTTTATATGGCTCTCGATGGAGTCAATC 322
| || |||||||||||||||||||| |||||||||||||||||||| || || |||||||
Sbjct 66 TTGTGGAGATTCTGTTGATAACATCTGTCGGATTTTATATGGCTCTTGACGGTGTCAATC 125
Query 323 TTCTTGGTCATGATGCTCGTAAATATCTGAACAACATTGTCTTCTATGTGTTTAGTCCTT 382
||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||
Sbjct 126 TTCTTGGTCATGATGCTCGCAAATATTTGAACAACATTGTCTTCTATGTGTTTGGTCCTT 185
Query 383 CGCTTATTGGAAGCCGTTTAGCTGATAGTGTTACATACGAAAGCTTGGTCAAAATGTGGT 442
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 186 CGCTTATTGGAAGTCGTTTAGCTGATAGTGTTACATATGAAAGCTTGGTCAAAATGTGGT 245
Query 443 TCATGCCGGTGAATGTTCTGCTT-ACATTCATCATTGGTTCATTACTT-GGCTGGATTGT 500
| |||||||| ||||||||| || ||||||||||||||||| ||| || |||||||||||
Sbjct 246 TTATGCCGGTTAATGTTCTG-TTGACATTCATCATTGGTTCGTTA-TTAGGCTGGATTGT 303
Query 501 TATTGTCATCACTAAGCCTCCTTCACACCTTCGTGGTCTCATTCTTGGTTGTTGTGCTGC 560
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 304 TATTGTCATCACTAAGCCTCCTTCACATCTTCGTGGTCTCATTCTTGGTTGTTGTGCTGC 363
Query 561 TGGGAATTTGGGGAATATGCCACTGATTATAATCCCAGCTGTTTGTAAAGAAAAAGGAGG 620
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 364 TGGGAATTTGGGGAATATGCCACTGATTATAATCCCAGCCGTTTGTAAAGAAAAAGGAGG 423
Query 621 TCCCTTTGGAGATCCTGAGAGTTGCCAGAAATATGGAATGGGTTATGTTGCTCTCTCCAT 680
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 424 TCCCTTTGGAGATCCAGAGAGTTGCCAGAAATATGGAATGGGCTATGTTGCTCTCTCCAT 483
Query 681 GGCTATGGGATCTATTTACATATGGACTTATGTATACAATCTTATGCGTGTGCTATCGAA 740
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 484 GGCAATGGGATCGATTTACATATGGACTTACGTATACAATCTAATGCGTGTGCTATCGAA 543
Query 741 CTCTCCCGTTGAAACCCCTCCCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCCCT 800
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 544 CTCTCCCATTGAAACCCCTCCCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCACT 603
Query 801 TATTTCTTCCAAGGAAGAAG-A-AA-ACAACCAAAAGGCTGGGAGGTGGGAAAAAGTCAA 857
|||| |||| |||||||||| | || ||||||||||||||||||||||||||||||| ||
Sbjct 604 TATTACTTCTAAGGAAGAAGAAGAAGACAACCAAAAGGCTGGGAGGTGGGAAAAAGTGAA 663
Query 858 GCGGAGATTGGTTTCACTGTCACAAAAAGTCAACCTTAAGACAATTTTTGCTCCATCAAC 917
|||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 664 GCGGAGATTGGTATCACTGTCAGAGAAAGTCAACCTTAAGACAATATTTGCTCCATCAAC 723
Query 918 TATTGCTGCGATGATTGCACTTGTGATCGGGCTCATTACTCCTTTAAGGAAGCTAATAAT 977
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TATTGCTGCGATGATCGCGCTTGTGATCGGGCTCATTACTCCTTTAAGGAAGCTAATAAT 783
Query 978 CGGCACGGAAGCTCCTCTCCGGGTGCTTCAAGACTCAGTAACTCTAGTGGGAGATGGGGC 1037
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 784 TGGCACAGAAGCTCCTCTCCGGGTTCTTCAAGATTCAGTAACTCTAGTGGGAGATGGGGC 843
Query 1038 AGTTCCTGCAATGACCATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAGTTCAGG 1097
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGTTCCTGCTATGACCATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAGTTCAGG 903
Query 1098 AATGAAAATGTCCAGTATTATCGGCGTCTTGGTTGCGCGTTACGTTTTACTGCCTATGAG 1157
|||||||||||||||||||||||| ||||||||||| || |||| ||| |||||||||||
Sbjct 904 AATGAAAATGTCCAGTATTATCGGTGTCTTGGTTGCACGCTACGCTTTGCTGCCTATGAG 963
Query 1158 CGGTGTTTTAATCGTAAGAGGAGCATATAAGTTGGATTTAGTTACATCAGAGCCCTTATA 1217
|||||||||||||||||||||||||||||||||||||||| |||| ||||| || || ||
Sbjct 964 CGGTGTTTTAATCGTAAGAGGAGCATATAAGTTGGATTTAATTACCTCAGAACCATTGTA 1023
Query 1218 CCAATTCGTTCTTCTTCTTCAATATGCTGTCCCACCAGCCATGAATCTAGGTACAATTAC 1277
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1024 CCAATTCGTTCTTCTTCTTCAGTATGCTGTCCCACCAGCAATGAATCTAGGTACAATTAC 1083
Query 1278 TCAGTTATTTGGAACTGGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTACTCTTT 1337
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 ACAATTATTCGGAACCGGGGAGAGTGAATGCTCAGTGATTATGCTCTGGACTTACTCTTT 1143
Query 1338 GGCTTCGATTGCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTAGCTTA 1391
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1144 GGCTTCGATTTCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTCGCTTA 1197
> Ahg313001 jgi|Araly1|313001|fgenesh1_pm.C_scaffold_1001781
Length=1161
Score = 649 bits (351), Expect = 0.0
Identities = 924/1191 (78%), Gaps = 77/1191 (6%)
Strand=Plus/Plus
Query 229 CTTTTGGAGCTGTTCATAACTTCATCAAAACCAGTCGTTG-AGATTCTGTTGATAACATC 287
||| |||| ||||||||||| ||||| | |||||| | | |||||||||||||||||
Sbjct 13 CTTCTGGATCTGTTCATAACCTCATCGATACCAGTTG-CGAAGATTCTGTTGATAACAGG 71
Query 288 AGTCGGATTTTA-TATGGCTCTCGATGGAGTCAATC-TTCTTG-GTCATGATGCTCGTAA 344
| |||||||||| | ||||||| ||| ||| || | ||| || ||| || ||| | ||
Sbjct 72 AATCGGATTTTACT-TGGCTCTAGATCAAGTTAA-CATTC-TGAATCAAGACGCTAGAAA 128
Query 345 ATATCTGAACAACATTGTCTTCTATGTGTTTAGTCCTTCGCTTATTGGAAGCCGTTTAGC 404
| | || ||||| || || |||||||||||||||||||| ||| ||| |||| ||||| |
Sbjct 129 ACAACTCAACAATATAGTTTTCTATGTGTTTAGTCCTTCACTTGTTGCAAGCAGTTTATC 188
Query 405 TGATAGTGTTACATACGAAAGCTTGGTCAAAATGTGGTTCATGCCGGTGAATGTTCTGCT 464
||| | | |||||||||||||| |||| |||||||||||||||||| | |||||| ||||
Sbjct 189 TGAGACTATTACATACGAAAGCATGGTGAAAATGTGGTTCATGCCGCTTAATGTTTTGCT 248
Query 465 TACATTCATCATTGGTTCATTACTTGGCTGGATTGTTATTGTCATCACTAAGCCTCCTTC 524
||||||||||||||||| || ||||| ||||||||||| |||||||| ||||||||
Sbjct 249 AACATTCATCATTGGTTCGTTTCTTGGTTGGATTGTTATCAAAATCACTAAACCTCCTTC 308
Query 525 ACACCTTCGTGGTC-TCATTC-TTGGTTGTTGTGCTGCTGGGAATTTGGGGAATATGCCA 582
|| || ||||| | ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 309 GCATCTCCGTGG-CATCA-TCGTTGGTTGTTGTGCTGCTGGGAATTTGGGGAATATGCCA 366
Query 583 CTGATTATAATCCCAGCTGTTTGTAAAGAAAAAGGAGGTCCCTTTGGAGATCCTGAGAGT 642
|| ||||| ||||||||| ||||||||||||| ||| |||| ||||||||||||||| |
Sbjct 367 CTCATTATCATCCCAGCTATTTGTAAAGAAAAGGGAAGTCCTTTTGGAGATCCTGAGTCT 426
Query 643 TGCCAGAAATATGGAATGGGTTATGTTGCTCTCTCCATGGCTATGGGATCTATTTACATA 702
|| ||||||||||| | |||||| |||| ||||| ||||| || ||| | |||||||||
Sbjct 427 TGTGAGAAATATGGACTTGGTTATATTGCACTCTCTATGGCGATTGGAGCCATTTACATA 486
Query 703 TGGACTTATGTATACAATCTTATGCGTG-TGCTATCGAACTCTCCCGTTGA-AACCCCTC 760
||||| || ||||||||||||||||| | ||||| | || || | || || || || |
Sbjct 487 TGGACGTACGTATACAATCTTATGCG-GATGCTAGCTAA-TC-CTGGTGGAGAAACCG-C 542
Query 761 CCTCTGTTGAATCCAACTACGACAGCTACAAAGTTCCCCTTATTTCTTCCAAGGAAGAAG 820
| | || | | ||| || |||||| | || || |||||| |||| | ||||
Sbjct 543 -----GATAAA-C-AG-TACCTCATCTACAATG--CCACTGATTTCTCCCAAAGTCGAAG 592
Query 821 AAAACAACCAAAAGGCTGGGAGGTGGGAAAAAG-TCAAGCGGAGATTGGTT-TCACT-GT 877
| || || ||||| ||| | ||| |||||| ||| || | || | |
Sbjct 593 TTGGGGAGCA---GGTTGGGACTTGG-AGCAAGGTCAAGCAAAGAGTG-TCCTCGGTAG- 646
Query 878 CACA-AAAAGTCAACCTTAAGA-CAATTTTTGCTCCATCAACTATTGCTGCGATGATTGC 935
|| | |||| |||| || | || |||| |||||||| ||||| ||||| ||| | || ||
Sbjct 647 CAGAGAAAA-TCAATCT-ACGAACAATATTTGCTCCTTCAACCATTGCAGCGCTTATCGC 704
Query 936 ACTTGTGATCGGGCTCATTACTCCTTTA--A-GGAAGCTAATAATCGGCA-CGGAAGCTC 991
|||| | | ||| | | | ||||||| | |||||||| || |||| | | | ||||
Sbjct 705 GCTTGCGGTTGGGTTAA--A-TCCTTTACTACGGAAGCTACTAGTCGGTAACACA-GCTC 760
Query 992 CTCTCCGGGTGCTTCAAGACTCAGTAACTCTAGTGGGAGATGGGGC-AGTTCCTGCAATG 1050
| || || ||| || | ||||| ||| ||||| |||| |||||||| | |||||| ||
Sbjct 761 CACTTCGAGTGATTGAGGACTCTGTATCTCTATTGGGGGATGGGGCGA-TTCCTGTTCTG 819
Query 1051 AC-CATGATTATAGGAGGAAACCTACTCAAAGGTTTGAGGAG-TTCAGGAATGAA-AATG 1107
|| | | ||| ||||||||||||| ||||| ||| |||| || |||||||||||| || |
Sbjct 820 ACTC-TCATTGTAGGAGGAAACCTTCTCAATGGTCTGAG-AGGTTCAGGAATGAACAA-G 876
Query 1108 TCCAGT-ATTATCGGCGTCTTGGTTGCGCGTTACGTT-TTACTGCC--TATGAGCGGTGT 1163
|| ||| || || || || |||||| ||||||| || || ||||| ||| || | ||
Sbjct 877 TC-AGTCATAATGGGTGTGGTGGTTGTGCGTTAC-TTGTTGCTGCCAATATTAG-GC-GT 932
Query 1164 TTTAATCGTAAGAGGAGCATATAAGTTGGATTTAGTTACATCAGAGCC-CTTATACCAAT 1222
||| || ||| ||||||| || | |||| ||| |||||||| || || ||| ||||| |
Sbjct 933 TTTCATAGTACGAGGAGCGCATTACTTGGGTTTGGTTACATCTGAACCGCTT-TACCAGT 991
Query 1223 TCGTTCTTCTTCTTCAATATG-CTGT-CCCACCAGCCATGAATCTAGGTACAATTACTCA 1280
| |||||||| ||||| |||| | || ||| ||||| |||||||| |||||||| |||||
Sbjct 992 TTGTTCTTCTGCTTCAGTATGTC-GTTCCC-CCAGCAATGAATCTTGGTACAATCACTCA 1049
Query 1281 GTTATTTGGAACTGGGGAGAGTGAATGCTCAGTGATTATGCT-CTGGACTTAC-TCTTTG 1338
|||| ||| | || || ||||||||||| |||||| | || ||||| ||| |||| |
Sbjct 1050 ACTATTCGGATCAGGAGAAAGTGAATGCTCTGTGATTCT-CTTCTGGAGTTATGTCTT-G 1107
Query 1339 GCTTC-GATTGCACTCACTGTTTGGCCAACATTCTTCATGTGGCTTGTAGC 1388
||||| | || | |||||||| ||||||||||||||||||||||| |||||
Sbjct 1108 GCTTCAGTTT-CTCTCACTGTCTGGCCAACATTCTTCATGTGGCTCGTAGC 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56868735785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5