BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76540.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476812 jgi|Araly1|476812|fgenesh2_kg.2__1942__AT1G76540.1 1823 0.0
> Ahg476812 jgi|Araly1|476812|fgenesh2_kg.2__1942__AT1G76540.1
Length=1248
Score = 1823 bits (987), Expect = 0.0
Identities = 1143/1214 (94%), Gaps = 28/1214 (2%)
Strand=Plus/Plus
Query 61 TCTCATTTAATTATATAACCTATCTACACTTTGATCTCCGACAATTCACTTTCCCAATAA 120
|||||||||||||||||||| |||||||||||| | | ||||||||||||| ||
Sbjct 31 TCTCATTTAATTATATAACCGATCTACACTTTG-T-T-------TTCACTTTCCCAACAA 81
Query 121 GAACCAACTgagag--agagagagcgccggagaagaagaatttt----agagagCGATGG 174
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 82 GAACCAACTGAGAGACAGAGAGAGCGCCGGAGAAGAAGAATTTTAGAGAGAGAGCGATGG 141
Query 175 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGC-TTTCGAGAAGCTTGAGAAAGTTGGT 233
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 142 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGCATTT-GAGAAGCTTGAGAAAGTTGGG 200
Query 234 GAAGGGACATACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGGAAAATCGTCGCT 293
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 201 GAAGGGACGTACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGAAAAATCGTCGCT 260
Query 294 CTAAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTCCGCGAG 353
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 261 CTCAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTTCGTGAG 320
Query 354 ATCTCCATTTTGCGAATGCTCGCTCGTGA-TCCTCACGTCGTCAGGTTAATGGATGTTAA 412
|||||||| ||||| ||||| |||||||| ||| ||| |||||||||| |||||||||||
Sbjct 321 ATCTCCATCTTGCGCATGCTTGCTCGTGATTCC-CACATCGTCAGGTTGATGGATGTTAA 379
Query 413 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 439
Query 473 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCAAGAACATTCCAACCCAAAC 532
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 440 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCGAGAACATTCCAACCCAAAC 499
Query 533 TATCAAGAGCTTGATGTATCAACTATGCAAAGGTATGGCATTCTGCCATGGTCACGGGAT 592
|||||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 500 TATCAAGAGCTTGATGTACCAACTATGTAAAGGAATGGCATTCTGTCATGGCCACGGGAT 559
Query 593 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 619
Query 653 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 679
Query 713 GATATTAACTCTTTGGTATAGAGCTCCAGAGGTTCTTCTTGGTGCCACCCATTACTCTAC 772
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 680 GATATTAACTCTATGGTATAGAGCTCCAGAAGTTCTTCTTGGGGCCACCCATTACTCTAC 739
Query 773 AGCTGTGGATATGTGGTCTGTTGGCTGCATATTTGCTGAACTTGTGACCAACCAAGCAAT 832
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 740 AGCTGTGGATATGTGGTCTGTTGGCTGCATCTTTGCTGAACTTGTGACCAACCAAGCAAT 799
Query 833 CTTTCAGGGAGACTCTGAGCTCCAACAGCTCCTCCATATTTTCAAGTTGTTTGGGACACC 892
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 800 CTTTCAGGGAGACTCTGAGCTCCAACAACTCCTCCATATTTTCAAGTTGTTCGGGACACC 859
Query 893 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 919
Query 953 GAAACCATCGACTCTATCCTCTGCTGTTCCAAACCTCGACGAGGCTGGAGTTGATCTTCT 1012
|||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 920 GAAACCGTCGACTCTCTCCTCAGTTGTTCCAAACCTCGACGAGGCTGGAATTGATCTTCT 979
Query 1013 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCAAAGATGGCTATGGAGCA 1072
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 980 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCGAAGATGGCTATGGAGCA 1039
Query 1073 TCCTTACTTTGATGATCTGCCAGAAAAGTCCTCTCTCTAAGGATTTAAAATCTTCAGTTA 1132
||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1040 TCCATACTTTGATGATCTGCCAGAAAAGTCCTCCCTCTAAGGATTTAAG-TCGTCAGTTA 1098
Query 1133 GTATCTTTCCAAGTTTTATGGTTTTTCTAGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1192
|||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1099 GTATCTTTCCCAGTTTTATG-TTTTTCTTGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1157
Query 1193 GCTGCTTCCCC-CTCTATGAATCATC-CTT-TCTTTAGC-ATAATATATCACTTCTGATT 1248
|||||||||| |||||||||||||| ||| || || | ||||||| ||| |||| ||
Sbjct 1158 GCTGCTTCCCAACTCTATGAATCATCACTTCTCATT-GTTATAATAT--CACCTCTGGTT 1214
Query 1249 GTTGTTTCTTTCTA 1262
| ||||||||||||
Sbjct 1215 GCTGTTTCTTTCTA 1228
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30
||||||||||||||||||||||||||||||
Sbjct 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5