BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76540.1 Length=1338 Score E Sequences producing significant alignments: (Bits) Value Ahg476812 jgi|Araly1|476812|fgenesh2_kg.2__1942__AT1G76540.1 1823 0.0 > Ahg476812 jgi|Araly1|476812|fgenesh2_kg.2__1942__AT1G76540.1 Length=1248 Score = 1823 bits (987), Expect = 0.0 Identities = 1143/1214 (94%), Gaps = 28/1214 (2%) Strand=Plus/Plus Query 61 TCTCATTTAATTATATAACCTATCTACACTTTGATCTCCGACAATTCACTTTCCCAATAA 120 |||||||||||||||||||| |||||||||||| | | ||||||||||||| || Sbjct 31 TCTCATTTAATTATATAACCGATCTACACTTTG-T-T-------TTCACTTTCCCAACAA 81 Query 121 GAACCAACTgagag--agagagagcgccggagaagaagaatttt----agagagCGATGG 174 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 82 GAACCAACTGAGAGACAGAGAGAGCGCCGGAGAAGAAGAATTTTAGAGAGAGAGCGATGG 141 Query 175 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGC-TTTCGAGAAGCTTGAGAAAGTTGGT 233 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 142 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGCATTT-GAGAAGCTTGAGAAAGTTGGG 200 Query 234 GAAGGGACATACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGGAAAATCGTCGCT 293 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 201 GAAGGGACGTACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGAAAAATCGTCGCT 260 Query 294 CTAAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTCCGCGAG 353 || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 261 CTCAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTTCGTGAG 320 Query 354 ATCTCCATTTTGCGAATGCTCGCTCGTGA-TCCTCACGTCGTCAGGTTAATGGATGTTAA 412 |||||||| ||||| ||||| |||||||| ||| ||| |||||||||| ||||||||||| Sbjct 321 ATCTCCATCTTGCGCATGCTTGCTCGTGATTCC-CACATCGTCAGGTTGATGGATGTTAA 379 Query 413 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 439 Query 473 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCAAGAACATTCCAACCCAAAC 532 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 440 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCGAGAACATTCCAACCCAAAC 499 Query 533 TATCAAGAGCTTGATGTATCAACTATGCAAAGGTATGGCATTCTGCCATGGTCACGGGAT 592 |||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 500 TATCAAGAGCTTGATGTACCAACTATGTAAAGGAATGGCATTCTGTCATGGCCACGGGAT 559 Query 593 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 619 Query 653 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 712 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 620 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 679 Query 713 GATATTAACTCTTTGGTATAGAGCTCCAGAGGTTCTTCTTGGTGCCACCCATTACTCTAC 772 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 680 GATATTAACTCTATGGTATAGAGCTCCAGAAGTTCTTCTTGGGGCCACCCATTACTCTAC 739 Query 773 AGCTGTGGATATGTGGTCTGTTGGCTGCATATTTGCTGAACTTGTGACCAACCAAGCAAT 832 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 740 AGCTGTGGATATGTGGTCTGTTGGCTGCATCTTTGCTGAACTTGTGACCAACCAAGCAAT 799 Query 833 CTTTCAGGGAGACTCTGAGCTCCAACAGCTCCTCCATATTTTCAAGTTGTTTGGGACACC 892 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 800 CTTTCAGGGAGACTCTGAGCTCCAACAACTCCTCCATATTTTCAAGTTGTTCGGGACACC 859 Query 893 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 952 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 860 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 919 Query 953 GAAACCATCGACTCTATCCTCTGCTGTTCCAAACCTCGACGAGGCTGGAGTTGATCTTCT 1012 |||||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||| Sbjct 920 GAAACCGTCGACTCTCTCCTCAGTTGTTCCAAACCTCGACGAGGCTGGAATTGATCTTCT 979 Query 1013 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCAAAGATGGCTATGGAGCA 1072 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 980 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCGAAGATGGCTATGGAGCA 1039 Query 1073 TCCTTACTTTGATGATCTGCCAGAAAAGTCCTCTCTCTAAGGATTTAAAATCTTCAGTTA 1132 ||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 1040 TCCATACTTTGATGATCTGCCAGAAAAGTCCTCCCTCTAAGGATTTAAG-TCGTCAGTTA 1098 Query 1133 GTATCTTTCCAAGTTTTATGGTTTTTCTAGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1192 |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1099 GTATCTTTCCCAGTTTTATG-TTTTTCTTGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1157 Query 1193 GCTGCTTCCCC-CTCTATGAATCATC-CTT-TCTTTAGC-ATAATATATCACTTCTGATT 1248 |||||||||| |||||||||||||| ||| || || | ||||||| ||| |||| || Sbjct 1158 GCTGCTTCCCAACTCTATGAATCATCACTTCTCATT-GTTATAATAT--CACCTCTGGTT 1214 Query 1249 GTTGTTTCTTTCTA 1262 | |||||||||||| Sbjct 1215 GCTGTTTCTTTCTA 1228 Score = 56.5 bits (30), Expect = 5e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30 |||||||||||||||||||||||||||||| Sbjct 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50055390021 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5