BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76560.1

Length=601
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927052 jgi|Araly1|927052|scaffold_202613.1                        534    2e-151


> Ahg927052 jgi|Araly1|927052|scaffold_202613.1
Length=452

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 402/455 (88%), Gaps = 14/455 (3%)
 Strand=Plus/Plus

Query  16   AAACGAAATT--CGTAGA-AATGATCTCGGGC-TCGGCGACGGCGAGT-CATGGGAGAGT  70
            ||||||||||  |  |||  ||||| || |||  | ||||||| || | | |||||||||
Sbjct  4    AAACGAAATTCACAAAGATGATGATGTC-GGCGACAGCGACGGTGA-TGCGTGGGAGAGT  61

Query  71   GTTGCTTCCGTCACAAAGGGAGCGACGGCCCGTCTCAACTGGATCAAATATTTTACGTTT  130
            | |||||||||||||  |||||||||||||  |||||||||||||  | ||||||||| |
Sbjct  62   GATGCTTCCGTCACACCGGGAGCGACGGCCAATCTCAACTGGATCGGAGATTTTACGTCT  121

Query  131  CAGAGAAACAGTACCG-AGACAATTCAGCCTGATGATGGTGACGAAGGCGACGGCAAAGT  189
             | |||||||||| || || | |||||| |||||||||||||| | ||||||||||||||
Sbjct  122  AAAAGAAACAGTATCGAAG-CGATTCAGGCTGATGATGGTGACTACGGCGACGGCAAAGT  180

Query  190  ATATGGGGACGAAGATGAGGGAGGAGAAACTATCGGAGATGATAGAGGAGAAAGTGAAGG  249
            ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  181  ATAAGGGGACGAAGATGAGGGAGGAGAAGCTATCGGAGATGATAGAGGAGAAAGTGAAGG  240

Query  250  AAGCGACAGAGGTTTGCGAGGCGGAAGAGATG-TCGGAGGAGTGTAGAGTTGCGTGGGAC  308
            ||||||| |||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct  241  AAGCGACGGAGGTTTGCGAGGCGGAAGAGA-GATCGGAGGAGTGTAGAGTCGCGTGGGAC  299

Query  309  GAAGTTGAAGAAGTGAGTCAAGCCAGAGCAGATCTGAGGATCAAGCTGAAGTTACTGAAT  368
            ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  300  GAAGTTGAAGAGGTGAGTCAAGCCAGAGCAGATCTGAGGATCAAGCTGAAGCTACTGAAC  359

Query  369  CAGGATCCGCTCGAGAGTTTCTGCCAGGAGAATCCAGAGACCGACGAGTGTCGAATCTAC  428
            || |||||  | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  CATGATCCATTAGAAAGTTTCTGCCAGGAGAATCCAGAGACCGACGAGTGTCGAATCTAC  419

Query  429  GAAGACTAAAATTT-GAGTTTTCGTGTTTTTAATG  462
            |||||||||  ||| || ||| | |||||||||||
Sbjct  420  GAAGACTAAT-TTTAGAATTTCC-TGTTTTTAATG  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22015774853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5