BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76570.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476815 jgi|Araly1|476815|fgenesh2_kg.2__1945__AT1G76570.1 1541 0.0
> Ahg476815 jgi|Araly1|476815|fgenesh2_kg.2__1945__AT1G76570.1
Length=1022
Score = 1541 bits (834), Expect = 0.0
Identities = 945/998 (95%), Gaps = 10/998 (1%)
Strand=Plus/Plus
Query 8 TGTTTCAGGAGAAGC-TT--TCATCACTTTCCTCAAGTTATTCGTCAATTCATTCTCTTC 64
||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 11 TGTTTCAGGAGAAGCTTTCATCATCACTTTCCTCAAGTTATTCGTCATTTCATTCTCTTC 70
Query 65 CGAGGATTCTCGTGTCC-AAG---CCTCGTAATAGAATTGCCGTGACAAAGTCCCGTTCG 120
|||||| | |||| || || |||||| |||||| || ||||||| ||||||||||
Sbjct 71 AGAGGATACACGTG-CCGGAGCCTCCTCGTTGTAGAATCGCTGTGACAAGGTCCCGTTCG 129
Query 121 ATTTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTC 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATCTGCAGAGCTTCGTGGCAAGAGCTCGCCGGAGTGTTGGTTTTCTCGGCGATTCCATTC 189
Query 181 ACTGCGGTTAAAGCAATTGCAAATAGCTCAATAGGAGTTTCTCTACGGCGGAGATTAGAA 240
|| |||||||||||||| |||||||||||| |||| | ||| ||||||||||||| |||
Sbjct 190 ACGGCGGTTAAAGCAATAGCAAATAGCTCACTAGGCGAATCTTTACGGCGGAGATTGGAA 249
Query 241 GAGAAAAAGAAGGAAGCCGTAGAGAATTCTTCAAGATTCAAGTCTAAAGCTCAGGAAGCT 300
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 250 GAGAAAAAGAAGGAAGCCGTTGAGAATTCTTCAAGATTCAAGGCTAAAGCTCAGGAGGCT 309
Query 301 AGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 AGAAACGACAGCAAGTGGTATGGAAAAGAACGTCCCCGTTGGTTTGGTCCAATCCCATAT 369
Query 361 GATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGG-TTTCGACATTGCAGG 419
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 370 GATTATCCTCCATACCTTACAGGAGAACTTCCAGGGGATTATGGATTT-GACATTGCAGG 428
Query 420 ACTTGGCAAAGATCGTTTGACCTTTGATAAGTATTTCAACTTTGAAATACTTCATGCTCG 479
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 429 ACTTGGCAAGGATCGTTTGACCTTTGATAAGTACTTCAACTTTGAAATACTTCATGCTCG 488
Query 480 TTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCGGAAGTATTTGATCTCACTGGAAC 539
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 489 TTGGGCCATGCTTGCAGCATTGGGTGCTCTAATCCCAGAAGTATTTGATCTCACCGGAGC 548
Query 540 TTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCCAAGCTTCAGGGAGAGAC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 549 TTTCCATTTTGCTGAACCCGTATGGTGGCGAGTCGGTTACTCGAAGCTTCAGGGAGAGAC 608
Query 600 ATTGGAGTACCTCGGCATCCCAGGGCTTCATGTAGCTGGAAGCCAAGGTGTCATTGTAAT 659
|||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 609 ATTGGACTACCTCGGCATTCCAGGGCTTCACGTAGCTGGAAGCCAAGGTGTCATCGTAAT 668
Query 660 TGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATACGCAAGATACTGTGGCATTGA 719
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 669 TGCCATTTGCCAAGTACTCTTGATGGTAGGACCGGAATATGCAAGATACTGTGGCATTGA 728
Query 720 GGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATTAACTATCCTGGAGGGACGCT 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 729 GGCCTTAGAGCCACTGGGAATATACTTGCCAGGAGACATCAACTATCCTGGAGGGACGCT 788
Query 780 TTTTGATCCCTTGAATCTTTCCGAGGATCCTGTAGCTTTTGAAGATCTTAAGGTTAAAGA 839
||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct 789 TTTTGATCCCTTGAACCTCTCTGAGGATCCGGTAGCTTTTGAAGATCTTAAGGTTAAAGA 848
Query 840 GATTAAAAATGGACGATTGGCGATGGTCGCGTGGCTTGGATTTTATGCACAGGCTGCTTT 899
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 849 GATTAAAAACGGACGATTGGCGATGGTCGCTTGGCTTGGATTTTATGCACAGGCTGCTGT 908
Query 900 CACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCGGATCCATTACATAACAA 959
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 909 CACTGGAAAAGGTCCTGTACAAAATCTTGTTGACCATGTCTCTGATCCATTACATAACAA 968
Query 960 TCTGATTGCCATGCTTCAGACATGACAATGTGTGAATA 997
|||| |||||||||||||||||||||||||||||||||
Sbjct 969 TCTGCTTGCCATGCTTCAGACATGACAATGTGTGAATA 1006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5