BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76580.1
Length=3686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927054 jgi|Araly1|927054|scaffold_202615.1 4397 0.0
Ahg472338 jgi|Araly1|472338|fgenesh2_kg.1__2292__AT1G20980.1 2001 0.0
> Ahg927054 jgi|Araly1|927054|scaffold_202615.1
Length=3147
Score = 4397 bits (2381), Expect = 0.0
Identities = 2722/2889 (94%), Gaps = 13/2889 (0%)
Strand=Plus/Plus
Query 360 AAAAAGGTCTTGATTTGAATCTACCTTGTGGTTTTAACGATGTT-GAAGGCACGCCGGTG 418
||| ||| |||||||||||||||||| |||||||||| ||| || |||| ||||||||||
Sbjct 264 AAAGAGGCCTTGATTTGAATCTACCTAGTGGTTTTAATGAT-TTGGAAGACACGCCGGTG 322
Query 419 GATTTAACCAGACCGAGTAAGAAGGTTAGGTCGGGATCTCCGGGAAGTGGCGGC---GGA 475
|||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 323 GATTTAACCAGACCTAGTAAGAAGGTTAGGTCGGGATCTACGGGAAGTGGCGGCGGAGGA 382
Query 476 GGAGGAGGAAACTATCCGAAGTGTCAGGTTGATAATTGTAAGGAAGATTTATCAATTGCT 535
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 GGAGGAGGAAACTATCCAAAGTGTCAGGTTGATAATTGTAAGGAAGATTTATCAATTGCT 442
Query 536 AAGGATTATCATAGAAGACATAAAGTTTGTGAGGTTCATAGCAAAGCTACTAAAGCTCTT 595
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 443 AAGGATTATCATAGAAGACATAAAGTATGTGAGGTTCATAGCAAAGCTACTAAAGCTCTT 502
Query 596 GTTGGGAAACAGATGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTTGGGAAACAGATGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAG 562
Query 656 TTTGATGAGGGGAAGAGAAGTTGTAGGCGTAGATTGGATGGTCATAACAGGCGGAGGAGA 715
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 563 TTTGATGAGGGGAAGAGAAGTTGTAGGCGTAGATTGGATGGCCATAACAGGCGGAGGAGA 622
Query 716 AAAACACAGCCCGATGCGATTACATCTCAGGTTGTAGCTCTGGAGAATCGTGATAATACT 775
||||| | |||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 623 AAAACGCTGCCCGATGTGATTACGTCTCAGGTTGTAGCTCTCGAGAATCGTGATAATACT 682
Query 776 TCTAATAACACTAATATGGATGTTATGGCTTTGTTAACAGCTTTAGTTTGTGCACAAGGT 835
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 683 TCTAATAACGCTAATATGGATGTTATGGCTTTGTTAACGGCTTTAGTTTGTGCACAAGGT 742
Query 836 AGGAACGAGGCTACTACTAATGGGTCTCCGGGAGTGCCTCAAAGAGAGCAACTTCTTCAG 895
| ||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 743 AAGAACGAGGCTATTACTAATGGGTCTCCGGGAGTGCCTGATAGAGAGCAGCTTCTTCAG 802
Query 896 ATACTTAACAAGATCAAGGCTTTACCTTTGCCTATGAATCTTACCTCGAAGTTGAACAAT 955
|||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 803 ATACTTAACAAGATCAAGGCTTTACCTTTGCCTATGGATCTTGCCTCAAAGTTGAACAAT 862
Query 956 ATCGGAATTTTAGCCAGGAAAAATCCGGAGCAACCCTCCCCGATGAATCCTCAAAATAGT 1015
|||||||||||||||||| |||||||||| ||||| ||| ||||||| ||||||||||||
Sbjct 863 ATCGGAATTTTAGCCAGGGAAAATCCGGATCAACCTTCCGCGATGAACCCTCAAAATAGT 922
Query 1016 ATGAATGGGGCTTCTTCTCCATCTACGATGGACTTGCTTGCTGCTCTCTCGGCATCTTTA 1075
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 923 ATGAATGGAGCTTCTTCTCCATCTACCATGGACTTACTTGCTGCTCTCTCGGCAACTTTA 982
Query 1076 GGTTCATCTGCTCCAGAGGCCATAGCTTTTTTATCTCAAGGAGGGTTTGGTAACAAAGAA 1135
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 GGTTCATCTGCTCCCGAGGCCATAGCTTTTTTATCTCAAGGAGGGTTTGGTAACAAAGAA 1042
Query 1136 AGCAATGATAGGACTAAGTTAACTTCTTCTGACCACAGCGCCACAACCAGTTTAGAAAAG 1195
| ||||||||| |||||||||||||||||||||||| ||| ||||||| | ||||||||
Sbjct 1043 AACAATGATAGTACTAAGTTAACTTCTTCTGACCACGGCGTTACAACCAATGTAGAAAAG 1102
Query 1196 AAAACTTTGGAGTTTCCTTCTTTTGGGGGAGGAGAGAGGACAAGTAGCACTAACCATTCT 1255
| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 1103 AGAACTTTGGAGTTTCCTTCTTTTGGGAGAGGAGAGAGGACAAGTAGCAGTAAACATTCT 1162
Query 1256 CCATCTCAGTATTCAGATTCACGCGGTCAAGACACTAGATCGAGCTTATCTCTACAACTA 1315
|| |||||| ||||||||||||||||||| ||||| ||||| ||||||||| ||||||||
Sbjct 1163 CCTTCTCAGGATTCAGATTCACGCGGTCAGGACACGAGATCTAGCTTATCTTTACAACTA 1222
Query 1316 TTCACCTCTTCACCAGAAGAGGAGAGTCGACCAAAAGTTGCATCTTCAACAAAGTATTAT 1375
||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1223 TTCACCTCTTCACCAGAGGATGAGAGTCAACCAACAGTTGCATCTTCAACAAAGTATTAT 1282
Query 1376 TCTTCTGCGAGCAGTAACCCTGTTGAGGATAGATCACCATCATCATCTCCAGTCATGCAA 1435
||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||
Sbjct 1283 TCTTCTGCGAGCAGTAACCCTGTTGAGGATAGATCTCCATCATCGTCTCCGGTCGTGCAA 1342
Query 1436 GAGTTATTCCCTTTGCATACTTCTCCTGAAACCAGGAGGTATAACAATTACAAAGACACT 1495
||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 1343 GAGTTGTTCCCTTTGCATACTTCTCCTGGAACCAGGAGGTCTAACAATTACAAAAACACT 1402
Query 1496 AGTACCAGTCCC-AGGACCAGTTGTTTGCCCCTAGAGCTCTTTGGTGCATCAAATAGAGG 1554
||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1403 AGTCCCA-TCCCCAGGACCAGTTGTTTGCCCCTAGAGCTCTTTGGTGCATCAAACAGAGG 1461
Query 1555 AGCTACTGCAAATCCTAATTACAATGTTT-TGAGGCATCAATCTGGTTATGCTTCATCTG 1613
|||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1462 AGCTACTGCAAATCCTAATTCCAATGTTTCT-AGGCATCAATCTGGTTATGCTTCATCTG 1520
Query 1614 GTTCGGATTATTCTCCTCCTAGCTTAAACTCTAATGCTCAGGAGCGCACAGGAAAGAT-A 1672
|||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |
Sbjct 1521 GTTCGGATTATTCTCCTCCTAGCTTAAACTCTGATGCTCAGGACCGCACCGGAAAGATCA 1580
Query 1673 TCTTTCAAACTATTTGAAAAAGATCCTAGTCAGCTCCCTAACACATTGCGAACCGAGATC 1732
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1581 T-TTTCAAACTATTTGAAAAAGATCCTAGTCAGCTCCCTGGCACATTGCGAACCGAGAT- 1638
Query 1733 TT-TAGATGGCTTTCTAGTTTTCCATCAGATATGGAGAGTTTTATCAGGCCTGGTTGTGT 1791
|| ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1639 TTATAGATGGCTTTCTAGCTTTCCATCAGAAATGGAGAGTTATATCAGGCCTGGTTGTGT 1698
Query 1792 TATTTTATCTGTCTATGTGGCAATGTCAGCTTCTGCTTGGGAACAACTTGAGGAAAATTT 1851
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1699 TATCTTATCTGTCTATGTGGCAATGTCAGCTTCTGCTTGGGAACAACTCGAGGAAAATTT 1758
Query 1852 ACTGCAACGAGTTAGATCTTTGGTTCAAGATTCAGAATTTTGGAGTAATTCAAGATTTTT 1911
||||||||| ||||| |||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 1759 ACTGCAACGGGTTAGTTCTTTGGTTCAAGATTCAGATTTTTGGAGGAATACAAGATTTTT 1818
Query 1912 GGTCAATGCAGGCAGACAGCTCGCGTCACACAAACATGGTAGAATTCGTCTGAGCAAATC 1971
||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1819 GGTCAATACAGGCAGACAGCTCGCATCACACAAACACGGTAGAATTCGTCTGAGCAAATC 1878
Query 1972 TTGGAGAACTTTGAATTTACCAGAGCTAATCACGGTGTCGCCGTTGGCTGTTGTAGCCGG 2031
||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 1879 TTGGAGAACTTTGAATTCACCAGAACTGATCACGGTGTCGCCGTTGGCTGTTGTAGCCGG 1938
Query 2032 TGAAGAAACAGCTTTAATAGTAAGGGGTAGAAACTTGACTAATGACGGAATGAGACTTCG 2091
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1939 TGAAGAAACAGCTTTGATAGTAAGGGGTAGAAACTTGACCAATGACGGAATTAGACTTCG 1998
Query 2092 TTGCGCACATATGGGTAACTACGCGTCAATGGAGGTAACTGGAAGAGAACATAGGTTAAC 2151
|||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||
Sbjct 1999 TTGCGCACATATGGGTAACTACACGTCAATAGAGGTAACTGGAACAGAACATAGGCGAAC 2058
Query 2152 AAAAGTTGATGAGTTAAACGTAAGTAGTTTCCAAGTCCAGAGTGCAAGCTCTGTTTCTCT 2211
|||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||
Sbjct 2059 AAAATTTGATGAGTTAAACGTTAGTAGTTTCAAAGTCCAGAGTGCAAGCCCTGTTTCTCT 2118
Query 2212 AGGACGATGTTTCATTGAGTTGGAGAATGGATTAAGAGGTGACAATTTCCCTTTGATAAT 2271
|||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 2119 AGGACGCTGTTTCATTGAGGTGGAGAATGGATTCAGAGGTGACAATTTCCCTTTGATAAT 2178
Query 2272 AGCCAATGCCACGATTTGCAAAGAGTTGAATCGCCTTGAAGAAGAGTTTCATCCAAAAGA 2331
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2179 AGCCAATGCCACGATTTGCAAAGAGTTGAATTGCCTTGAAGACGAGTTTCATCCAAAAGA 2238
Query 2332 CGTGATAGAGGAACAAATACAGAACTTAGATCGTCCAAGATCAAGAGAAGAAGTTCTTTG 2391
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2239 CGTGATAGAGGAACAGACACAGAACTTAGATCGTCCAAGATCAAGAGAAGAAGTTATTTG 2298
Query 2392 CTTCTTGAATGAGCTTGGTTGGCTATTTCAGAGGAAATGGACATCCGATATTCATGGAGA 2451
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 CTTCTTGAATGAGCTCGGTTGGCTATTTCAGAGGAAATGGACATCCGATATTCATGGAGA 2358
Query 2452 ACCCGACTTTTCTCTTCCTCGCTTCAAATTTTTGCTCGTATGCTCTGTTGAAAGAGATTA 2511
| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2359 ATCTGACTTTTCTCTTCCCCGCTTCAAATTTTTGCTTGTATGCTCTGTTGAAAGAGATTG 2418
Query 2512 CTGTTCTCTCATAAGAACCGTCCTGGATATGATGGTAGAGAGAAATTTGGGAAAAGACGG 2571
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2419 CTGTTCTCTCATAAGAACTGTCCTGGATATGATGGTAGAGAGAAATTTGGGAAAAGATGG 2478
Query 2572 TCTGTTGAACAAGGAGTCCTTAGATATGCTGGCTGATATTCAGCTACTGAATCGCGCTAT 2631
|||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |
Sbjct 2479 TCTGATGAACAAGGAGTCCTTAGATATGCTGGCTGAGACTCAGCTATTGAATCGCGCTGT 2538
Query 2632 CAAAAGGAGAAACACAAAAATGGCTGAAACTCTGATCCATTATTCCGTTAATCCCTCTAC 2691
|||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||
Sbjct 2539 CAAAAGGAGAAATACAAAAATGGCTGAAACGCTGATTCATTACTCCGTTAATCCGTCTAC 2598
Query 2692 TAGAAACTTCATCTTCTTGCCTAGTATCGCTGGACCTGGCGATATCACACCTTTGCATTT 2751
|| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2599 TAAAAACTTCATCTTCTTGCCTAATATCGCTGGACCTGGTGATATCACACCTTTGCATTT 2658
Query 2752 GGCTGCTTCCACATCTAGTTCTGATGATATGATTGATGCCCTGACTAATGATCCACAAGA 2811
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2659 GGCTGCTTCCACATCTGGTTCTGATGATATGATTGATGTACTGACTAATGATCCACAAGA 2718
Query 2812 GATTGGATTATCTTGCTGGAATACCCTAGTCGATGCAACCGGGCAAACTCCCTTTAGCTA 2871
||||||||||||||| |||||||||||||| |||||| ||||||| ||||| ||||| ||
Sbjct 2719 GATTGGATTATCTTGTTGGAATACCCTAGTTGATGCATCCGGGCAGACTCCATTTAGGTA 2778
Query 2872 CGCTGCAATGAGAGACAACCACAGTTACAACACCTTGGTGGCTCGTAAACTTGCAGATAA 2931
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2779 TGCTGCAATGAGAAACAACCACAGTTACAACACCTTGGTGGGTCGTAAACTTGCAGATAA 2838
Query 2932 AAGAAACGGTCAAATATCTCTGAACATTGAAAATGGGATCGATCAGATTGGCCTGAGTAA 2991
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2839 AAGAAACGGGCAAATATCTCTGAACATTGAAAATGGGATCGATCAGATTGGTCTGAGTAA 2898
Query 2992 GAGACTAAGCTCAGAGCTAAAGAGATCTTGCAACACATGTGCAAGTGTGGCTCTAAAGTA 3051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2899 GAGACTAAGCTCAGAGCTAAAGAGATCTTGCAACACATGTGCAAGTGTGGCTCTAAAGTA 2958
Query 3052 TCAGAGGAAGGTTTCGGGTTCACGTCGATTGTTCCCAACTCCGATCATTCACTCGATGCT 3111
||||| |||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2959 TCAGAAGAAGGTTTCGAGTTCACGTCGTTTGTTCCCAACTCCGATCATCCACTCGATGCT 3018
Query 3112 TGCGGTTGCGACAGTATGTGTTTGCGTCTGCGTGTTTATGCATGCTTTCCCAATGGTCAG 3171
||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 3019 TGCTGTTGCGACAGTCTGCGTTTGCGTCTGCGTGTTTATGCATGCTTTCCCAATCGTCAG 3078
Query 3172 ACAAGGCTCTCACTTCAGTTGGGGTGGTCTTGATTATGGCTCAATCTAAGGTTTGTTATA 3231
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 3079 ACAAGGCTCTCACTTCAGTTGGGGTGGTCTTGATTACGGTTCAATCTAAGGTTTGCTATA 3138
Query 3232 TAACTAAGT 3240
|||||||||
Sbjct 3139 TAACTAAGT 3147
> Ahg472338 jgi|Araly1|472338|fgenesh2_kg.1__2292__AT1G20980.1
Length=4017
Score = 2001 bits (1083), Expect = 0.0
Identities = 2277/2833 (80%), Gaps = 163/2833 (6%)
Strand=Plus/Plus
Query 479 GGAGGAAACTATCCGAAGTGTCAGGTTGATAATTGTAAGGAAGATTTATC-AATTGCTAA 537
||||| || ||||| | |||||||| |||||||||| |||||||| || | ||||||
Sbjct 786 GGAGGGAATTATCCCATCTGTCAGGTGGATAATTGTACTGAAGATTTGTCTCA-TGCTAA 844
Query 538 GGATTATCATAGAAGACATAAAGTTTGTGAGGTTCATAGCAAAGCTACTAAAGCTCTTGT 597
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 845 GGATTATCATAGAAGGCATAAAGTTTGTGAAGTTCATAGCAAAGCTACTAAAGCTCTTGT 904
Query 598 TGGGAAACAGATGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAGTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TGGGAAACAGATGCAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAGTT 964
Query 658 TGATGAGGGGAAGAGAAGTTGTAGGCGTAGATTGGATGGTCATAACAGGCGGAGGAGAAA 717
||||||||| ||||||||||||||||||||||||| ||| |||||| | || ||||| ||
Sbjct 965 TGATGAGGGAAAGAGAAGTTGTAGGCGTAGATTGGCTGGCCATAACCGACGTAGGAGGAA 1024
Query 718 AAC-AC--AGCCCGATGCGATTACATCTCAGGTTGTAGCTCTGGAGAATCGTGATAATAC 774
||| || |||| || | | || ||||| |||||| | || || ||| ||||||||||
Sbjct 1025 AACTACGCAGCCGGAGGAGGTTGCATCTGGGGTTGTGGTTCCGGGGAACCGTGATAATA- 1083
Query 775 TTC-TAATAACACTA-----A-TATGGATGTTATGGCTTTGTTAACAGCTTTAGTTTGTG 827
|| ||||| | ||| | ||||||| |||||||||||||||| || |||| |||||
Sbjct 1084 TTAATAATACCTCTACCGCCAATATGGATCTTATGGCTTTGTTAACTGCCTTAGCTTGTG 1143
Query 828 CACAAGGTAGGAACGAGGCTACTA-CTAATGGG-TCTCCGGGAGTGCCTCAAAGAGAGCA 885
||||||||| ||| | || || | | | |||| ||||| | |||||| | ||||||||
Sbjct 1144 CACAAGGTAAGAATGCGG-TAA-AGCCAGTGGGGTCTCCAGCTGTGCCTGATAGAGAGCA 1201
Query 886 ACTTCTTCAGATACTTAACAAGATCAAGGCTTTACCTTTGCCTATGAATCTTACCTCGAA 945
||||||||||||||||||||||| || || || |||||||||||| ||||| ||| ||
Sbjct 1202 GCTTCTTCAGATACTTAACAAGATAAATGCATTGCCTTTGCCTATGGATCTTGTCTCTAA 1261
Query 946 GTTGAACAATATCGGAATTTTAGCCAGGAAAAATCCGGAGCAACCCTCCCCGATGAATCC 1005
|||||||||||| |||| |||||| ||||||||| ||| ||||| | | |||| ||
Sbjct 1262 GTTGAACAATATTGGAAGTTTAGCAAGGAAAAATATGGAT-AACCCAACG-G-TGAACCC 1318
Query 1006 TCAAAAT-AGTATGAATGGGGCTTCTTCTCCATCTACGATGGACTTGCTTGCTGCTCTCT 1064
|||||| | |||||||||||||||| || ||||| |||||||||||||||| ||| |
Sbjct 1319 CCAAAATGA-TATGAATGGGGCTTCTCCT---TCTACCATGGACTTGCTTGCTGTTCTTT 1374
Query 1065 CGGCATCTTTAGGTTCATCTGCTCCAGAGGC-CATAGCTTTTTTATCTCAAGGAGGGTTT 1123
| || | ||||| |||||| | || || || | |||| | ||||||||||| ||||||
Sbjct 1375 CAACAACGTTAGGCTCATCTTCACCTGATGCAC-TAGCCATATTATCTCAAGGTGGGTTT 1433
Query 1124 GGTAACAAAGAAAGCAATGATAGGACTAAGTTAACTTCTTCTGACCACAGCGCCACAACC 1183
||||||||||| ||| | || || ||||||||| |||||| ||| ||| | | ||||||
Sbjct 1434 GGTAACAAAGACAGCGA-GA-AG-ACTAAGTTATCTTCTTATGAACACGGTGTAACAACC 1490
Query 1184 AGTTTAGAAAAGAAAACTTT-GGAGTTTCCTTCTTTTGGGGGAGGAGAG-AGGACAAGTA 1241
| ||| ||||||| |||||| || |||| ||||| ||||||||| |||| || || |||
Sbjct 1491 AATTTGGAAAAGAGAACTTTTGG-GTTTTCTTCTGTTGGGGGAG-AGAGGAG--CA-GTA 1545
Query 1242 GCACTAACCATTCTCCATCTCAGTATTCAGATTCACGCGGTCAAGACACTAGATCGAGCT 1301
||| |||||| ||||| |||||| ||||||||||||| |||||||||||||| || ||||
Sbjct 1546 GCAGTAACCAATCTCCTTCTCAGGATTCAGATTCACGTGGTCAAGACACTAGGTCTAGCT 1605
Query 1302 TATCTCTACAACTATTCACCTCTTCACCAGAAGAGGAGAGTCGACCAAAAGTTGCATCTT 1361
| |||||||||||||||||||| ||||| || || ||||||||||| | ||| |||||||
Sbjct 1606 TGTCTCTACAACTATTCACCTCATCACCTGAGGATGAGAGTCGACCGACAGTGGCATCTT 1665
Query 1362 CAACAAAGTATTATTCTTCTGCGAGCAGTAACCCTGTTGAGGATAGATCACCATCATCAT 1421
| | |||||||||||||||||| |||||||| ||||||||||||||||| ||||| || |
Sbjct 1666 CTAGAAAGTATTATTCTTCTGCCAGCAGTAATCCTGTTGAGGATAGATCGCCATCTTCCT 1725
Query 1422 CTCCAGTCATGCAAGAGTTATTCCCTTTGCATACTTCTCCTGAAACCAGGAGGTATAACA 1481
|||| |||||||| ||||||||||| ||||| || || |||||||||| ||||| ||| |
Sbjct 1726 CTCCGGTCATGCAGGAGTTATTCCCATTGCAGACATCCCCTGAAACCATGAGGTCTAAGA 1785
Query 1482 ATTACAA-AGACACTAGTACCAGTCCCAGGACCAGTTGTTTGCCCCTAGAGCTCTTTGGT 1540
|| |||| | |||| | | ||||||||| |||| |||||||| ||||||||||||
Sbjct 1786 ATCACAATA-ACAC-A--A---GTCCCAGGAGTGGTTGCTTGCCCCTTGAGCTCTTTGGT 1838
Query 1541 GCATCAAATAGAGGAGCTACTGCAAATCCTAATTACAATGTTTT-GAGGCATCAATCTGG 1599
||||| ||||||||| |||||||||||||||| || | ||| | |||| || |||||
Sbjct 1839 GCATCGAATAGAGGA---ACTGCAAATCCTAATTTTAAAGGTTTCG-GGCAACAGTCTGG 1894
Query 1600 TTATGCTTCATCTGGTTCGGATTATTCTCCTCCTAGCTTAAACTCTAATGCTCAGGAGCG 1659
||||||||| ||||| || || || ||||||||||||||||||||| |||||||||| ||
Sbjct 1895 TTATGCTTCTTCTGGCTCTGACTACTCTCCTCCTAGCTTAAACTCTGATGCTCAGGACCG 1954
Query 1660 CACAGGAAAGATA-TCTTTCAAACTATTTGAAAAAGATCCTAGTCAGCTCCCTAACACAT 1718
||| ||||||||| |||| ||||||| |||| |||||||| |||||||||||| ||||
Sbjct 1955 CACTGGAAAGATAGTCTT-CAAACTACTTGATAAAGATCCAAGTCAGCTCCCTGGGACAT 2013
Query 1719 TGCGAACCGAGATCTTTAGA-TGGCTTTCTAGTTTTCCATCAGATATGGAGAGTTTTATC 1777
| ||| | ||||||| || | |||||||| | |||||||||| |||||||||| ||||
Sbjct 2014 TACGATCTGAGATCTATA-ACTGGCTTTCGAACATTCCATCAGAAATGGAGAGTTATATC 2072
Query 1778 AGGCCTGGTTGTGTTATTTTATCTGTCTATGTGGCAATGTCAGCTTCTGCTTGGGAACAA 1837
|||||||| |||||| || ||||||| ||||| || |||||| || | || |||||||||
Sbjct 2073 AGGCCTGGCTGTGTTGTTCTATCTGTTTATGTAGCGATGTCACCTGCAGCCTGGGAACAA 2132
Query 1838 CTTGAGGAAAATTTACTGCAACGAG-TTAGATCTTTGGTT-CAAGATTCA------GAAT 1889
|| ||| |||| || |||||||| | || | | ||| | | ||| |||| || |
Sbjct 2133 CTCGAGCAAAACTTGCTGCAACG-GCTTGG-TGTTTTGCTACAAAATTCTCCTTCTGATT 2190
Query 1890 TTTGGAGTAATTCAAGATTTTTGGTCAATGCAGGCAGACAGCTCGCGTCACACAAACATG 1949
||||||| || | |||||| | || || | ||||| |||||||| ||||||||| |||
Sbjct 2191 TTTGGAGAAACGCGAGATTTATAGTTAACACGGGCAGGCAGCTCGCATCACACAAAAATG 2250
Query 1950 GTAGAA-TTCG-TCTGAGCAAATCTTGGAGAACTTTGAATTTACCAGAGCTAATCACGGT 2007
||| || |||| | | ||||||||||||||||||| ||||| ||||||||| ||| | ||
Sbjct 2251 GTA-AAGTTCGATGT-AGCAAATCTTGGAGAACTTGGAATTCACCAGAGCTCATCTCAGT 2308
Query 2008 GTCGCC-GTTGGCTGTTGTAGCCGGTGAAGAAACA-GCTTTAATAGTAAG-GGGTAGAAA 2064
|| || || | |||| ||||| |||||||||||| | ||| | ||||| ||| ||||
Sbjct 2309 ATCACCTGTAG-CTGTGGTAGCTGGTGAAGAAACAAG-TTTGGTTGTAAGAGGG-AGAAG 2365
Query 2065 CTTGACTAATGACGGAATGAG-ACTTCGTTGCGCACATATGGGTAACTACGCGTCAATGG 2123
||||||||| || ||||| || | |||| ||| |||||||||||| |||| ||||||||
Sbjct 2366 CTTGACTAACGAGGGAATCAGTA-TTCGCTGCACACATATGGGTAGCTACATGTCAATGG 2424
Query 2124 AGGTAACTGGAAG-AGAACATAG-GTTAA-CAAAAGTTGATGAGTTAAACGTA-AGTAGT 2179
||||||| || | || ||| | || | | | |||| |||| || ||| | ||||
Sbjct 2425 AGGTAACCGGG-GCAGTGTGTAGAG--AAGCCATATTTGACAAGTTGAATGTAGA-TAGT 2480
Query 2180 TTCCAAGTCCAGAGTGCA-AGCTCTG-TTTCTC-TAGGACGATGTTTCATTGAGTTGGAG 2236
||| ||||||| | || | | | ||| ||| || | ||||| |||||||||||| |||||
Sbjct 2481 TTCAAAGTCCAAAATGTACACC-CTGGTTT-TCGT-GGACGCTGTTTCATTGAGGTGGAG 2537
Query 2237 AATGGATTAAGAGGTGACAATTTCCCTTTGATAATAGCCAATGCCA-CGATTTGCAAAGA 2295
|||||||| || ||||||| ||| || ||||| || ||||||| | | || ||||||||
Sbjct 2538 AATGGATTCAGGGGTGACAGTTTTCCATTGATTATTGCCAATGA-ATCCATCTGCAAAGA 2596
Query 2296 GTTGAATCGCCTTGAAGAAGAGTTTCATCC-AAAAGACGTGATA-GAG-GAACAAATA-C 2351
||| |||||||| |||||||||||||| || ||||| | |||| || ||| || | |
Sbjct 2597 GTTAAATCGCCTCGAAGAAGAGTTTCACCCCAAAAGTCAAGATATGACAGAAGAACCAGC 2656
Query 2352 --AGAACTTAGATCG---TCCAA-GATCAAGAGAAGAAGTTCTT-TGCTTCTTGAATGAG 2404
||| || | |||| ||| | | ||||||||||||||| || ||||||||||| |||
Sbjct 2657 GCAGAGCTCAAATCGCAGTCCCACG-TCAAGAGAAGAAGTT-TTGTGCTTCTTGAACGAG 2714
Query 2405 CTTGGTTGGCTATTTC-AGAGGAAATGGACATC-CGATATTCATGGAG-AACCCGACTTT 2461
||||||||||| |||| ||| ||| ||| || | | || ||| || ||||||||
Sbjct 2715 CTTGGTTGGCT-TTTCCAGAAGAACCAGACCTCTC-AGCCTCG-GGAACAATCCGACTTT 2771
Query 2462 TCTCTT-CCTCGCTTCAAATTTTTGCTCGTATGCTCTGTTGAAAGAGATTACTGTTCTCT 2520
|| ||| || |||||||| ||||| || || ||||| |||||||||||||||||| ||||
Sbjct 2772 TCCCTTGCC-CGCTTCAAGTTTTTACTTGTTTGCTCGGTTGAAAGAGATTACTGTGCTCT 2830
Query 2521 CATAAGAAC-CGTCCTGGATATGATGGTAGAGAGAAATTTGG-GAAAAGACG-GTCTGTT 2577
||| ||||| | |||| || ||| |||||||||||||||||| ||| || | | |||
Sbjct 2831 CATCAGAACAC-TCCTCGACATGTTGGTAGAGAGAAATTTGGTGAAT-GATGAG-CTG-- 2885
Query 2578 GAACA-AGGAGTCCTTAGATATGCTGGCTGATATTCAGCTACTGAATCGCGCTATCAAAA 2636
|||| || || |||| || ||||| || || |||||| | ||||||| ||| | || |
Sbjct 2886 -AACAGAGAAG-CCTTGGAAATGCTCGCCGAGATTCAGTTGTTGAATCGTGCTGTTAAGA 2943
Query 2637 GGAGAAA-CACAAAAATGGCTGAAACT-CTGATCCATTATTCCGTTAATCCCTCT--ACT 2692
||| ||| |||| |||||| |||| || || || ||||| || ||||||||||| |||
Sbjct 2944 GGA-AAAGCACAGAAATGGTTGAA-CTACTCATTCATTACTCGGTTAATCCCTCAGCACT 3001
Query 2693 -AG-------AAAC--TTCATCTTCTTGCCTAGTATCGCTGGACCTGGCGATATCACACC 2742
|| ||| ||| | ||||| || | ||| |||||||||||| |||||||||
Sbjct 3002 CAGTTCCTCCAAAAAGTTCGTTTTCTTACCCAATATAACTGGACCTGGCGGTATCACACC 3061
Query 2743 TTTGCATTTGGCTGCTTCCACATCTAGTTCTGATGATATGATTGATGCC-CTGACTAATG 2801
||| ||| | ||||||| |||||| |||| |||| |||||||||| | || || ||||
Sbjct 3062 TTTACATCTAGCTGCTTGTACATCTGGTTCAGATGCTATGATTGAT-CTACTCACCAATG 3120
Query 2802 ATCCACAAGAGATTGGATTATCTTGCTGGAATACCCTA-GTCGATGCAACCGGGCAAACT 2860
||||||||||||| |||||||| ||||||| || || | |||||||||||||||||||
Sbjct 3121 ATCCACAAGAGATCGGATTATCGAGCTGGAACACTCTTTG-CGATGCAACCGGGCAAACT 3179
Query 2861 CCCTTTAGCTACGCTGCAATGAGAGA-CAACCACAGTTACAACACCTTGGTGGCTCGTAA 2919
|| | ||||||||||||||||| || |||||| | || ||| | ||||||| ||||||
Sbjct 3180 CCATACAGCTACGCTGCAATGAG-GAACAACCATAACTATAACTCATTGGTGGGTCGTAA 3238
Query 2920 ACTTGCAGATAAAAGAAAC-GGTCAAATATCTCTGAACATTGAAAATGGGATCGAT--C- 2975
||||||||||||||||||| || ||| | || || ||||| || | | ||| | | |
Sbjct 3239 ACTTGCAGATAAAAGAAACAGG-CAAGTCTCGCTAAACATCGAGCACGAGATAGTTGACC 3297
Query 2976 AGATTGGCCTGAGTAAGAGACTAAGCTCAGAGCT-AA-A-G--AG-ATCTTGCAACACAT 3029
| | || ||||| ||||||||||| |||||| | || | | | |||||| | | |
Sbjct 3298 AAACCGGTCTGAGCAAGAGACTAAGTTCAGAGATGAACAAGTCATCATCTTGTGCCTCGT 3357
Query 3030 GTGCAAGTGTGGCTCTAAAGTATCAGAGGAAG-GTTTCGGGTTCACGTCGATTGTTCCCA 3088
|||||| ||||||||||||||||| | ||| ||||| ||||| ||||||||||||
Sbjct 3358 GTGCAACCGTGGCTCTAAAGTATCAAAA-AAGAGTTTCAAATTCACACCGATTGTTCCCA 3416
Query 3089 ACTCCGATCATTCACTCGATGCTTGCGGTTGCGACAGTATGTGTTTGCGTCTGCGTGTTT 3148
||||| ||||||||||| |||||||||||||| || || || |||||||||||||| |||
Sbjct 3417 ACTCCTATCATTCACTCAATGCTTGCGGTTGCAACGGTCTGCGTTTGCGTCTGCGT-TTT 3475
Query 3149 -ATGCATGCTTTCCCAATGGTCAGACAAGGCTCTCACTTCAGTTGGGGTGGTCTTG-ATT 3206
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct 3476 CATGCACGCTTTCCCAATCGTCAGACAAGGTTCTCACTTCAGTTGGGGAGGT-TTGGATT 3534
Query 3207 ATGGCTCAATCTA 3219
|||||||||||||
Sbjct 3535 ATGGCTCAATCTA 3547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139252659607
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5