BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76590.1
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476817 jgi|Araly1|476817|fgenesh2_kg.2__1947__AT1G76590.1 1399 0.0
> Ahg476817 jgi|Araly1|476817|fgenesh2_kg.2__1947__AT1G76590.1
Length=1151
Score = 1399 bits (757), Expect = 0.0
Identities = 908/976 (93%), Gaps = 30/976 (3%)
Strand=Plus/Plus
Query 26 ATTATCGTGACCGACTTCAAAAAACAAGAAAAACCTCAACTTCTC-TTTTTCAG----CT 80
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 1 ATTATCGTGACCGACTTC-AAAAACAAGAAAAACCTCAATTTCTCTTTTTTCAGCTATCT 59
Query 81 ATAGCCGCCGCCTCCTCCCACTAAACTCAAATCCTCTCATAGTCTTTTCAATCAAATC-T 139
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 60 ATAGCCGCCGCCTCCT-CCACTAAACTCAAATCCTCTCTTAGTCTTTTCAATCAAATCTT 118
Query 140 GCTCTTCTTCACTGTTGAAGCTGGCTATCAAAACTCACAATAACTATGGGACCGATGATG 199
||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 119 CCTCTTCTTCGCTGTTGAAGCTGGCTATCAAAACTCACAATAAC--T-------ATGATG 169
Query 200 ATGAGAGCAGAAGAAGATAACT---ACAATCTAAATCCTCCACCATGGCTAATCCCAATG 256
|||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 170 ATGAGAGCAGAAGAAGATAACTACAACAATCTAAGTCCTCCACCATGGTTAATCCCAATG 229
Query 257 CTAAGAGCAAACTACTTCATCCCTTGTTCAATCCACGCCGCTTCCAACAAAAGCGAGTGC 316
|||| ||||||||||||| |||| |||||||||||||| |||||||||||||||| |||
Sbjct 230 CTAAAAGCAAACTACTTCGTCCCATGTTCAATCCACGCTTCTTCCAACAAAAGCGAATGC 289
Query 317 AACATGTTCTGTCTTGACTGTTCTTCTG-AGGCCTTTTGCTCTTACTGTTTGCTCAATCA 375
||||||||||||||||| || ||| | | ||||||||||||||||||||||||| |||
Sbjct 290 AACATGTTCTGTCTTGATTGCAATTC-GCATGCCTTTTGCTCTTACTGTTTGCTCACTCA 348
Query 376 CAGAAACCATCGTGTCCTCCAGATACGGAGATCATCGTACCACAACGTTGTGAGAGTAAA 435
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 349 CAGAAACCATCGTGTCCTTCAGATACGGAGATCATCGTACCACAACGTTGTGAGGGTAAA 408
Query 436 CGAGATTCAGAAGTACATAGACATATCTTGTGTTCAGACATATATAATCAACAGCGCAAG 495
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CGAGATTCAGAAGTTCATAGACATATCTTGTGTTCAGACATATATAATCAACAGCGCAAG 468
Query 496 GATCGTTTTCTTGAACGAACGTCCTCAGCCAAGAATCGGCAAAGGAGTCACCAATACTTG 555
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AATCGTGTTCTTGAACGAACGTCCTCAGCCAAGAATCGGCAAAGGAGTCACCAATACTTG 528
Query 556 TGAAATCTGTTGCAGAAGCCTTCTCGATTCTTTCCGTTTCTGCTCTCTCGGTTGCAAACT 615
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 529 TGAAATCTGTTGCAGAAGCCTTCTTGATTCTTTCCGTTTCTGCTCTCTCGGTTGCAAACT 588
Query 616 TGGAGGAATGAAGCGTGATCCAAGTCTAACCTTCTCTTTGAGAGGGAAGCATGGAAGAGA 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TGGAGGAATGAAGCGTGATCCAAGTCTAACCTTCTCTTTGAGAGGGAAGCATGGAAGAGA 648
Query 676 GTACGAAGGTGAGTGGGAATCTGATGAAGCGACTACACCAACTAAGATACGCAAGACATG 735
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 649 GTACGAAGGTGAGTGGGAATCTGATGAAGCGACCACACCAACTAAGATACGCAAGACTTC 708
Query 736 TGCTTTCAACCGTCTGATGAGTGGTCTTTCCATCTCCACCGTTAAATGTGATTACTTGTC 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGCTTTCAACCGTCTGATGAGTGGTCTTTCCATCTCCACCGTTAAATGTGATTACTTGTC 768
Query 796 AGGAGATCAAC-CGTCTTCGAGCTCCGGTGATGAGAGCGGTTTTAAACTTTCTCCGGGGA 854
||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 769 AGGAGATCAACGC-TCCTCGAGCTCCGGTGATGAGAGCGGTTTTAATCTTTCTCCGGGGA 827
Query 855 CACCGCCGATATATAATCACCGGAATTCAAGTAGACGGAAGGGCGTCCCACACCGTGCTC 914
| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 828 CGCCGCCGATATATAATCACCGGAATTCAAGCAGGCGGAAGGGCGTGCCACACCGTGCTC 887
Query 915 CTTTCTAAAATTAATA--CTAACGGAAGCTAATTAT-ATAGTGTAGATTATAGAAAATGT 971
||||||| |||||||| |||||||||||||||||| ||| | ||| | |||||||||
Sbjct 888 CTTTCTAGAATTAATATACTAACGGAAGCTAATTATTATA-TATAG-T-ATAGAAAATAC 944
Query 972 GGTTGTTATGTTGTAA 987
||| ||||||||||||
Sbjct 945 GGTCGTTATGTTGTAA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46128729570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5