BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76600.1
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476818 jgi|Araly1|476818|fgenesh2_kg.2__1948__AT1G76600.1 1086 0.0
> Ahg476818 jgi|Araly1|476818|fgenesh2_kg.2__1948__AT1G76600.1
Length=839
Score = 1086 bits (588), Expect = 0.0
Identities = 785/870 (90%), Gaps = 53/870 (6%)
Strand=Plus/Plus
Query 88 ATGGGTCTTTGTGTATCTGTTAATCGAAACGAGTACGTTTCTTCGTCGACGACGGCTAAA 147
||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 1 ATGGGTCTTTGTGTATCTGTTAATCGAAACGAGTACGACTCTTCGCCGTCGACGGCTAAA 60
Query 148 ATCGTAACAATTAACGGCGATCTCCGTGAATACGATGTACCGGTGTTAGCATCTCAGGTT 207
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGTGACAATTAACGGCGATCTCCGTGAATACGATGTACCGGTGTTAGCATCTCAGGTT 120
Query 208 CTGGAATCTGAATCGACGtcttcttc-t--tcatcat-c-atc-atcttcttcttATTTT 261
|||||||||||||||||||||||||| | || || | | || ||||||||||||||||
Sbjct 121 CTGGAATCTGAATCGACGTCTTCTTCATCATCGTCTTCCTCTCGATCTTCTTCTTATTTT 180
Query 262 CTATGTAATTCCGATTCTCTCTACTACGACGATTTTATCCCAGCGATTGAATCTGATGAG 321
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CTATGTAATTCCGATTCTCTCTACTACGACGATTTTATCCCGGCGATTGAATCTGATGAG 240
Query 322 ATTCTTCAAGCGAATCAGATCTATTTCGTCCTTCCCATCTCTAAACGACAATACCGTCTC 381
|||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 241 ATTCTTCAAGCGGATCAAATCTATTTCGTTCTTCCAATCTCTAAACGACAATACCGTCTC 300
Query 382 TCTGCCTCGGATATGGCGGCTCTCGCTGTAAAAGCCAGCGTCGCGATTGAGAAAGCAGCG 441
|| || |||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 301 TCGGCGTCGGATATGGCGGCTCTCGCCGTGAAAGCCAGCGTCGCGATTGAGAAATCAGCG 360
Query 442 GGGAAGAAAAATCGCCGTCGTAG-A--AGCGGAAGAATCTCTCCGGTTGTGACGTTGAAT 498
|||||||||||||| |||||||| | ||||||||||| || ||||||||||||||||||
Sbjct 361 GGGAAGAAAAATCGTCGTCGTAGAAGCAGCGGAAGAATATCGCCGGTTGTGACGTTGAAT 420
Query 499 CAGGCTAACGATAATCGGATCGCCGCCGTGAACAACAGAATTGGAGGCGAAGCAACGAAT 558
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 CAGCCTAACGATAATCGGATCGCCGCCGTGAACAACAGAATTGGAGGCGAAGCAACG-AT 479
Query 559 ATGATGATGCAAAAAGGAAAGTTACCGAATAGAACGACGCCGTTTAAAGATACAAACGGT 618
| | |||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 480 -T--T--TGCAAAAAGGAAAGTTGCCGAATAGAACGACGCCGTTTAAAGATACAACCGGT 534
Query 619 TATTCTCGGTCTGGTTCGGTTAGGAAATTGAAAAGATATACGTCTGGTCGAGCTAAATTG 678
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TATTCCCGGTCTGGTTCGGTTAGGAAATTGAAAAGATATACGTCTGGTCGAGCTAAATTG 594
Query 679 GCGGTTCGATCGTTTAGACTGAGACTCTCTACTATATACGAAGGCTCTTCGTTTAATTAG 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GCGGTTCGATCGTTTAGACTGAGACTCTCTACTATATACGAAGGCTCTTCGTTTAATTAG 654
Query 739 AGCGATTATAAAACTAAGATTACATTCTTTTTGTTT-TTGTTGTTATCGTTACGAAAAAT 797
| | | | || || ||| |||| || |||||||||||||||||| |
Sbjct 655 -----T-A-----C-A---TT---TT-TTT--GTTTGTTCTTGTTATCGTTACGAAAA-T 692
Query 798 GTTTGTGTAATGCTGTTTCAATATGATCTGTAAATTACAGCTTTCACTTT-GCT-T-GT- 853
|||||||||||| | || ||| |||||||||||||||||||||||||||| ||| | ||
Sbjct 693 GTTTGTGTAATG-T-TT-CAAAATGATCTGTAAATTACAGCTTTCACTTTCGCTATTGTG 749
Query 854 ATAT-TTT-CCCATTTTGTTATGTCATGTGTACTTATATTTTATAAG-ATAGCTT----- 905
|||| ||| ||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 750 ATATATTTTCCCGTTTTGTTATGTAATGTGTACTTATATTTTATAATTATAGCTAAGAAA 809
Query 906 CAAAAATCAAATTTCAGTCACACTGTTGCG 935
|||||||||||| |||||||||||||||||
Sbjct 810 CAAAAATCAAATCTCAGTCACACTGTTGCG 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5