BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76610.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476819 jgi|Araly1|476819|fgenesh2_kg.2__1949__AT1G76610.1 1158 0.0
> Ahg476819 jgi|Araly1|476819|fgenesh2_kg.2__1949__AT1G76610.1
Length=826
Score = 1158 bits (627), Expect = 0.0
Identities = 743/799 (93%), Gaps = 8/799 (1%)
Strand=Plus/Plus
Query 57 aaaaaaTGAGAACGATTATCGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 116
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 31 AAAAAATGAGAACGATTATGGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 90
Query 117 CTCCGACGAACGTTGACTGTACTCGTGAAGTCGGACTTCGAAGAACCCTCCGTTCACTCA 176
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 91 CTCCGACGAACGTTGACTGTGCCCGTGAAGTCGGACTCCGAAGAACCCTCCGTTCACTCA 150
Query 177 TGGAGTGCGTAATCCCATATTGTTGCACGTACCAACCTCCTCCCACCGACCAAAACGACA 236
| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 151 TCGAGTGGGTAATCCCATATTGTTGCACGTACCAACCTCCTCCTTCCGACCAAAACGACA 210
Query 237 CCGTCTCTGTCTCTTCATCCACTTCTTCCTCCGACCAAACAGGCGTTGTCGTCACGGGTA 296
|||||||||||||||||| ||||||||||||||||||| | ||||| ||||| || || |
Sbjct 211 CCGTCTCTGTCTCTTCATTCACTTCTTCCTCCGACCAATCTGGCGTCGTCGTAACCGGCA 270
Query 297 CTTTCTATGGTCACCGACGTGGCCACGTTAGCTTCTGCCTCCAAGACGACACTCGTCCCT 356
|||||| ||||||||| |||||||| || ||||||||||||||||| || ||||||||||
Sbjct 271 CTTTCTTTGGTCACCGCCGTGGCCATGTCAGCTTCTGCCTCCAAGAAGATACTCGTCCCT 330
Query 357 CCTCTCCACCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGAGAGA 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 331 CCTCTCCGCCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGGGAGA 390
Query 417 TGGAAGAGGGTTTTCTCCGTATCGCTCTCCGGAGCAAAAGCAACCGACGGTCTAGTATCT 476
|||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 391 TGGAAGAGGGCTTTCTCCGCATAGCTCTCCGGAGCAAAAGCAACCGCCGGTCTAGTATCT 450
Query 477 TTAACGTTCCAGTTTGGTCTATGTACTGCAACGGCA-GAAAATTTGGATTTGCGGTGAGG 535
|||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 451 TTAACGTTCCGGTTTGGTCTATGTACTGCAACGGCAAGAAAGTT-GGATTTGCGGTGAGG 509
Query 536 AGAGAAACCACTGAAAACGACGTCGGATTTCTCCGGCTGATGCAGTCTGTTTCCGTTGGC 595
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 510 AGAGAAACGACTGAAAACGACGTCGGATTTCTCAGGCTGATGCAGTCTGTTTCCGTTGGC 569
Query 596 GCAGGGGTGATTCCAAATGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 655
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GCAGGGGTGATTCCGAACGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 629
Query 656 GGATCAAGTGACTCGGAATCGTTTCATATGGTTAACCAAGGAGGTGGTTATGGGCAGGAA 715
||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 630 GGATCGAGTGACTTGGAATCGTTTCACATGGTAAACCAAGGGGGTGGTTATGGACAGGAG 689
Query 716 CTTAGCATTTTTCTTTCAAGATCGTGAAAGTAATTAAGAAAAATCTAGTTATGATGGATG 775
|||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||
Sbjct 690 CTTAGCATTTTTCTTTCAAGATCGTGAA-GTAATTAGGGAAAATCTAGTTATGATCGATG 748
Query 776 TTATTTGTAATGTTCGTTTTATAT-TGTGT-A-T-GTTACGACTTAGGAGATCGTTTTTA 831
|||||| ||||||||||||| | | | ||| | | ||||||||||| || ||||||||||
Sbjct 749 TTATTTTTAATGTTCGTTTT-TGTGTATGTTACTAGTTACGACTTACGAAATCGTTTTTA 807
Query 832 CGAACATTATAAATATAAA 850
|||||||||||||||||||
Sbjct 808 CGAACATTATAAATATAAA 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5