BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76610.1 Length=864 Score E Sequences producing significant alignments: (Bits) Value Ahg476819 jgi|Araly1|476819|fgenesh2_kg.2__1949__AT1G76610.1 1158 0.0 > Ahg476819 jgi|Araly1|476819|fgenesh2_kg.2__1949__AT1G76610.1 Length=826 Score = 1158 bits (627), Expect = 0.0 Identities = 743/799 (93%), Gaps = 8/799 (1%) Strand=Plus/Plus Query 57 aaaaaaTGAGAACGATTATCGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 116 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 31 AAAAAATGAGAACGATTATGGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 90 Query 117 CTCCGACGAACGTTGACTGTACTCGTGAAGTCGGACTTCGAAGAACCCTCCGTTCACTCA 176 |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| Sbjct 91 CTCCGACGAACGTTGACTGTGCCCGTGAAGTCGGACTCCGAAGAACCCTCCGTTCACTCA 150 Query 177 TGGAGTGCGTAATCCCATATTGTTGCACGTACCAACCTCCTCCCACCGACCAAAACGACA 236 | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 151 TCGAGTGGGTAATCCCATATTGTTGCACGTACCAACCTCCTCCTTCCGACCAAAACGACA 210 Query 237 CCGTCTCTGTCTCTTCATCCACTTCTTCCTCCGACCAAACAGGCGTTGTCGTCACGGGTA 296 |||||||||||||||||| ||||||||||||||||||| | ||||| ||||| || || | Sbjct 211 CCGTCTCTGTCTCTTCATTCACTTCTTCCTCCGACCAATCTGGCGTCGTCGTAACCGGCA 270 Query 297 CTTTCTATGGTCACCGACGTGGCCACGTTAGCTTCTGCCTCCAAGACGACACTCGTCCCT 356 |||||| ||||||||| |||||||| || ||||||||||||||||| || |||||||||| Sbjct 271 CTTTCTTTGGTCACCGCCGTGGCCATGTCAGCTTCTGCCTCCAAGAAGATACTCGTCCCT 330 Query 357 CCTCTCCACCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGAGAGA 416 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 331 CCTCTCCGCCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGGGAGA 390 Query 417 TGGAAGAGGGTTTTCTCCGTATCGCTCTCCGGAGCAAAAGCAACCGACGGTCTAGTATCT 476 |||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 391 TGGAAGAGGGCTTTCTCCGCATAGCTCTCCGGAGCAAAAGCAACCGCCGGTCTAGTATCT 450 Query 477 TTAACGTTCCAGTTTGGTCTATGTACTGCAACGGCA-GAAAATTTGGATTTGCGGTGAGG 535 |||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||| Sbjct 451 TTAACGTTCCGGTTTGGTCTATGTACTGCAACGGCAAGAAAGTT-GGATTTGCGGTGAGG 509 Query 536 AGAGAAACCACTGAAAACGACGTCGGATTTCTCCGGCTGATGCAGTCTGTTTCCGTTGGC 595 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 510 AGAGAAACGACTGAAAACGACGTCGGATTTCTCAGGCTGATGCAGTCTGTTTCCGTTGGC 569 Query 596 GCAGGGGTGATTCCAAATGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 655 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 570 GCAGGGGTGATTCCGAACGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 629 Query 656 GGATCAAGTGACTCGGAATCGTTTCATATGGTTAACCAAGGAGGTGGTTATGGGCAGGAA 715 ||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 630 GGATCGAGTGACTTGGAATCGTTTCACATGGTAAACCAAGGGGGTGGTTATGGACAGGAG 689 Query 716 CTTAGCATTTTTCTTTCAAGATCGTGAAAGTAATTAAGAAAAATCTAGTTATGATGGATG 775 |||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||| Sbjct 690 CTTAGCATTTTTCTTTCAAGATCGTGAA-GTAATTAGGGAAAATCTAGTTATGATCGATG 748 Query 776 TTATTTGTAATGTTCGTTTTATAT-TGTGT-A-T-GTTACGACTTAGGAGATCGTTTTTA 831 |||||| ||||||||||||| | | | ||| | | ||||||||||| || |||||||||| Sbjct 749 TTATTTTTAATGTTCGTTTT-TGTGTATGTTACTAGTTACGACTTACGAAATCGTTTTTA 807 Query 832 CGAACATTATAAATATAAA 850 ||||||||||||||||||| Sbjct 808 CGAACATTATAAATATAAA 826 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31985127363 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5