BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76620.1
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476820 jgi|Araly1|476820|fgenesh2_kg.2__1950__AT1G76620.1 2784 0.0
Ahg472343 jgi|Araly1|472343|fgenesh2_kg.1__2297__AT1G21060.1 551 8e-156
> Ahg476820 jgi|Araly1|476820|fgenesh2_kg.2__1950__AT1G76620.1
Length=1970
Score = 2784 bits (1507), Expect = 0.0
Identities = 1860/2018 (92%), Gaps = 73/2018 (4%)
Strand=Plus/Plus
Query 6 TTGTGGAGTAAAAACTGGGTTTCACACACTTCACTTGCCTCTCAATACCCGGGAAAACAA 65
|||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||| ||
Sbjct 1 TTGTGGAGTAAAAACTGGGTTT--TACACTTCACTTGCGTCTGAATACCCGGGGAAA-AA 57
Query 66 AATGTCGGTTTCACTTGCTACTTTTCCCGGAAAGTTACAAAGTCATTCCCTTTTCAGGTT 125
|||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 58 AATGTCGGTTTCACTTGCTAATTTTCTTGGAAAGTTACAAAGTCTTTCCCTTTTCAGGTT 117
Query 126 GTGAAGTCACATTAACAT--A-AG-AGAAGAAGCAAAAAGGCTTGGAGCTTTAttttttg 181
|||||||||| |||||| | || ||||||| ||||||||||||||||||| ||||||
Sbjct 118 TTGAAGTCACACTAACATAAAGAGTAGAAGAAAAAAAAAGGCTTGGAGCTTTA-TTTTTG 176
Query 182 cttttttttttCTTTCTTCTAGAAAACATGATCTTGAGTTTCCGAGTAAGATTCTTTTAA 241
||||||| || ||||||||||||||||||||| |||| ||||||| || ||||||||||
Sbjct 177 CTTTTTTCTTAATTTCTTCTAGAAAACATGATCCTGAGCTTCCGAGCAAAATTCTTTTAA 236
Query 242 AAAGAGTTTGCAAAGAACGAGAAAAATGATGGCTCTGATGAATTGTGCATAttcatcttc 301
| |||| | | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGAGAG--T-----G--TGAG-AAAATGATGGCTCTGATGAATTGTGCATATTCATCTTC 286
Query 302 ttcttcgtcttcgtctacttcctctcccacttcttcatcatcttcttcttcatattctCC 361
|||||||||||| ||| |||||||||||| | | ||||||||||||||||||||
Sbjct 287 TTCTTCGTCTTCTTCTTCTTCCTCTCCCA------C-T--TCTTCTTCTTCATATTCTCC 337
Query 362 AAGGAACAGAGAGAGCATGTTTTTGCAGAGTGTAGTTGATGCGTCACCTTCAAGTTTCTC 421
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 338 GAGGAACAGAGAGAACATGGTTTTGCAGAGTGTAGTTGATGTGTCACCTTCAAGTTTCTC 397
Query 422 TTCCGACAGAAAATCTATTTTACCAATTGAGAAGACTTTAATAAGACATCAGAATTCCAG 481
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 398 TTCCGACAGAAAATCTATTTTACCAATTGAGAAGACTTTAATAACTCACCAAAATTCCAG 457
Query 482 TCTCTGCTTGATCCCAAAGTCTTCAGAAGAATTGAAGAAGGAGATTGCATCAATTGAGAT 541
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 458 TCTCTGCTTGATCCCAAAGTCTTCAGAAGAGTTGAAGAAGGAAATTGCATCAATTGAGAT 517
Query 542 AGAGATTCTACACATGGAACGATATCTCTTATCTCTTTACAGAAAATCATTTGAGCAACA 601
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 518 AGAGATTCTACACATGGAACGATATCTCTTATCTCTTTACAGGAAATCTTTTGAACAGCA 577
Query 602 ACTTCCTAATTCCTTCTCTAATCTCTCTG-T--TACTACTACCTTACCTCGTTCTGTGAC 658
|||||||||||||| |||||| ||||||| | |||||||| ||| ||||||||||||||
Sbjct 578 ACTTCCTAATTCCTACTCTAAACTCTCTGCTACTACTACTAACTTTCCTCGTTCTGTGAC 637
Query 659 TACTTCACCAACATCACTAACTCAT---TATCAAGCTTACCAAAAACCAATCTCATATCC 715
|||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 638 TACTTCACGAACATCACTAACTCATCACTATCAAGCTTACCAAAAACCAATTTCATATCC 697
Query 716 TCGGAGTTTCAACACTAGTTTAAAAGCCTTATCTTCAAGGGAAGGGACTAGAGTAGTTTC 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TCGGAGTTTCAACACTAGTTTAAAAGCCTTATCTTCAAGGGAAGGGACTAGAGTAGTTTG 757
Query 776 TGGTACTCACAGTCTTGGAGAGCTTTTAGGATCATCTCATATAGTTGATCATAACAACT- 834
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 758 TGGTAATCACAGTCTTGGAGAGCTTCTAGGATCATCTCATATAGTTGATCATAGTAA-TC 816
Query 835 TCATAAACCCGAATAAACTCTCTGAAGATATCATGAGATGCATTTCTTCTGTGTATTGTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TCATAAACCCGAATAAACTCTCTGAAGATATCATGAGATGCATTTCTTCTGTGTATTGTA 876
Query 895 CACTTTCAAGAGGATCAACGAGTACCACTTCCACTTGTTTTCCTGCTTCTCCGGTTTCCT 954
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 877 CACTTTCAAGAGGATCAACGAGTACCAATTCCACTTGTTTCCCTGCTTCTCCGGTTTCGT 936
Query 955 C-----C-AATGCCTCAACCATTTTCTCTTCCAAATTTAATTA-T--GAAGATAAATGGA 1005
| | |||||||| ||||||||||||||||||| ||||| | || ||||||||||
Sbjct 937 CATTGTCGAATGCCTCGACCATTTTCTCTTCCAAATCCAATTACTATGACGATAAATGGA 996
Query 1006 GCTTGAATGGCGCAAGTGAGGATCATTTTCTGAATCACTGTCAAGATCAAGACAATGTTT 1065
|||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 997 GCTTGAATTGCGCGAGTGAGGATCATTTTCTGAATCACTGTCAAGATCAAGGCAATGTTT 1056
Query 1066 TGCCTTGTGGTGTTGTTGTCATAGAGGCTCTTAGAGTACATTTAGACGATGGTAGTTTCG 1125
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1057 TGCCTTGTGGTGTTGTTGTGATAGAGGCTCTTAGAGTACATTTAGACGATGCTAGTTTCG 1116
Query 1126 GTTACGCTGCTCTTATGCTTCAAAACTTCAGATCACTGGTTCAAAATCTTGAGAAAGTTG 1185
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1117 GTTACGCTGCTCTTATGCTGCAAAACTTCAGATCATTGGTTCAAAATCTTGAGAAAGTTG 1176
Query 1186 ATCCGAGTAGAATGAAACGCGAAGAGAAGCTCGCGTTTTGGATAAACATTCACAATGCTC 1245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1177 ATCCGAGTAGAATGAAACGCGAAGAGAAGCTCGCGTTTTGGATTAACATTCACAATGCTC 1236
Query 1246 TTGTGATGCATGCTTACTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTT 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 TTGTGATGCATGCTTACTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTT 1296
Query 1306 TGAAGGCAGCTTATGATATTGGAGGCTATAGAATAAACCC-TTATATCATCCAAAGCTCA 1364
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1297 TGAAGGCAGCTTATGATATTGGAGGCTATAGAATAAACCCGTT-TATCATCCAAAGCTCA 1355
Query 1365 ATCTTAGGAATCAGACCTCATTACACATCACCATCACCTTTACTCCAAACTCTGTTTTCC 1424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 ATCTTAGGAATCAGACCTCATTACACATCACCATCACCTTTACTCCAAACTCTGTTTTCG 1415
Query 1425 CCTTCAAGAAAGTCGAAAACTTGCAGTGTTAGACACATTTACGCATTGGAATACCCCGAG 1484
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1416 CCTTCAAGAAAGTCGAAAACTTGCAGTGTTAGACACGTTTACGCATTGGAATACCCCGAG 1475
Query 1485 GCTTTAGCTCATTTCGCTATTTCTTCAGGGGCATTCACTGATCCTAC---AGTTCGAGTT 1541
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1476 GCTTTAGCTCATTTCGCTATTTCTTCAGGGGCATTCACTGATCCTACGGTAGTTCGGGTT 1535
Query 1542 TACACCGCGGATAGAATCTTCCGGGATCTAAGACAAGCGAAACAAGAGTATATCAGAAGT 1601
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1536 TACACGGCGGATAGAATCTTCCGGGATCTAAGACAAGCTAAGCAAGAGTATATCAGAAGT 1595
Query 1602 AATGTTCGTGTTTACAAAGGGACAAAGATTTTGTTGCCAAAGATCTTTCAACATTATGTT 1661
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1596 AATGTTCGTGTTTACAAAGGGACAAAGATTTGGTTGCCAAAGATCTTTCAGCATTATGTT 1655
Query 1662 AAAGACATGTCAATGGATGTGTCTAAGCTCATGGAAGCAACATCTCAATGTTTACCAGAA 1721
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1656 AAAGACATGTCAATGGATGTGTCTAAGCTCATGGAAGCAACAGCTCAGTGTTTACCAGAA 1715
Query 1722 GATGCAAGGAAAATTGCTGAGAAATGTTTGAAAGAGAAGAAGAGTAAGAATTTTGAATGG 1781
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1716 GCTGCGAGGAAAATTGCTGAGAAATGTTTGAAGGAGAAGAAGAGTAAGAATTTTGAATGG 1775
Query 1782 TTACCGGAAAATTTGAGCTTCCGGTATGTTATCGCCGGAGAATTGGTCGGAGCAAGAAAT 1841
||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 1776 TTACCGGAAAATTTGAGTTTCCGATATGTCATCGCCGGAGAATTGGTTGGAGCAAGTAAT 1835
Query 1842 AAGACGTGAAGGGTTTATTCAAGAAAAGTGttttttttttGCCTCCTGATGTGATTAAAT 1901
|||||||||||| ||| || | | | | || ||||||||||||
Sbjct 1836 AAGACGTGAAGG-TTT-TT---GCC---T-T----------C-TC---ATGTGATTAAAT 1872
Query 1902 AATCTGATTACAATTAGTGTTCAATTTCAttttt-tttttCAAGTGAGAAATTGTAAAAC 1960
||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1873 AATTTGATTACAATTAGTGTTCAATTTCAGTTTTCTTTTTCAAGTGAGAAATTGTAAAAC 1932
Query 1961 CAGTGTTTGTTTGTATAATCTTAATAAACCGAGAACTA 1998
||||||||||||||||||||||||||||||||||||||
Sbjct 1933 CAGTGTTTGTTTGTATAATCTTAATAAACCGAGAACTA 1970
> Ahg472343 jgi|Araly1|472343|fgenesh2_kg.1__2297__AT1G21060.1
Length=1518
Score = 551 bits (298), Expect = 8e-156
Identities = 605/750 (81%), Gaps = 33/750 (4%)
Strand=Plus/Plus
Query 1077 GTTGTTGTCATAGAGGCTCTTAG-AGTACATTTAGACGATGGTAGTTTCGGTTACGCTGC 1135
|||||||| ||||| ||| ||| | | || | || |||||||||||| | |||||||
Sbjct 748 GTTGTTGTAATAGAATCTC-TAGAACTTCACCTGGATGATGGTAGTTTCAATCACGCTGC 806
Query 1136 TCTTATGCTTCAAAACTTCAGATCACTGGTTCAAAATCTTGAGAAAGTTGATCCGAGTAG 1195
||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 807 TCTTATGCTCCAAAACTTCAGATCACTAGTTCAAAAGCTTGAGAAGGTTGATCCGAGTAG 866
Query 1196 AATGAAACGCGAAGAGAAGCTCGCGTTTTGGATAAACATTCACAATGCTCTTGTGATGCA 1255
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 867 AATGAAACGCGAAGAGAAGCTCGCATTTTGGATAAACATTCACAATGCCCTCACAATGCA 926
Query 1256 TGCTTACTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTTTGAAGGCAGC 1315
||| || ||||| || |||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 927 TGCCTATTTAGCCTACGGAACTCACAACCGTGCCAGAAACACCTCGGTTTTAAAGGCAGC 986
Query 1316 TTATGATATTGGAGGCTATAGAATAAACCCTTATATCATCCAAAGCTCAATCTTAGGAAT 1375
||||||| ||||||||||| | |||||||||| || |||||||||||||||||||| ||
Sbjct 987 TTATGATGTTGGAGGCTATCGTGTAAACCCTTACATAATCCAAAGCTCAATCTTAGGCAT 1046
Query 1376 -CAG-ACCTCATTACACATCACCATCACCTTTACTCCAAAC-TCTGTTTTCCCCTTCAAG 1432
| | || |||| | |||||| | | ||| | || || | ||||||| || |||||
Sbjct 1047 TC-GTACG-CATTTC---TCACCA-C-C-TTTGTTGCAGACAT-TGTTTTCACCATCAAG 1097
Query 1433 AAAGTCGAAAACTTGCAGTGTTAGACACATTTACGCATTGGAATACCCCGAGGCTTTAGC 1492
||||||||||||||| | ||| | |||||| ||||| |||||||| || ||||| || ||
Sbjct 1098 AAAGTCGAAAACTTGTAATGTCAAACACATATACGCCTTGGAATATCCTGAGGCATTGGC 1157
Query 1493 TCATTTCGCTATTTCTTCAGGGGCATTC-ACTGATCCTACAGTTCGAGTTTACACCGCGG 1551
|||||||||| |||||||||| || ||| || |||||| | ||||| |||||||| ||||
Sbjct 1158 TCATTTCGCTCTTTCTTCAGGAGC-TTCTACAGATCCTCCGGTTCGGGTTTACACAGCGG 1216
Query 1552 ATAGAATCTTCCGGGATCTAAGACAAGCGAAACAAGAGTATATCAGAAGTAATGTTCGTG 1611
|| | || ||||||||||||||| || | ||| |||||| ||| |||| |||||||||
Sbjct 1217 ATTGCATTTTCCGGGATCTAAGAAAATCCAAAGAAGAGTTTATAAGAAACAATGTTCGTA 1276
Query 1612 TTTACAAAGGGACAAAGATTTTGTTGCCAAAGATCTTTCAACATTATGTTAAAGACATGT 1671
| |||| | ||||||||| |||||||| |||||| |||| | |||| |||||||||||
Sbjct 1277 TACACAATGAGACAAAGATATTGTTGCCCAAGATCGTTCATTACTATGCTAAAGACATGT 1336
Query 1672 CAATGGATGTGTCTAA-GCTCATGGAAGCAACATCTCAA-TGTTTACCAGAAGATGCAAG 1729
|| |||||| ||| | |||||||| |||| | || |||||||| ||| | || |
Sbjct 1337 CACTGGATGCATCTGCCG-TCATGGAAACAACGG-TGAAGTGTTTACCGGAA--TCCACG 1392
Query 1730 GA-A-AATTGCTGAGAAAT-GTTTGAAAGAGAAGAAGAGTAAGAATTTT-GAATGGTT-A 1784
| | ||| ||| |||||| ||| ||| || | |||| | | ||| | |||| || |
Sbjct 1393 AAGAGAATAGCTCAGAAATTGTT-GAA-GA-A-GAAGTGCA-GAAACATAGAATA-TTCA 1446
Query 1785 CCGGAAAATTTGAGCTTCCGGTATGTTATC 1814
|||||||| | || ||||| ||||| |||
Sbjct 1447 CCGGAAAACTCAAGTTTCCGTTATGTAATC 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75799587550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5