BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76640.1 Length=480 Score E Sequences producing significant alignments: (Bits) Value Ahg927060 jgi|Araly1|927060|scaffold_202621.1 760 0.0 Ahg934750 jgi|Araly1|934750|scaffold_402738.1 723 0.0 > Ahg927060 jgi|Araly1|927060|scaffold_202621.1 Length=521 Score = 760 bits (411), Expect = 0.0 Identities = 457/480 (95%), Gaps = 0/480 (0%) Strand=Plus/Plus Query 1 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAAC 60 |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 22 ATGAAGAATACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTGGAGGACAAGAAC 81 Query 61 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 82 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGATGGTAGAATCTCTGCA 141 Query 121 GAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 180 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 142 GAGGAGCTTAAGAAGAGTTTCAAGACATTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 201 Query 181 GCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCT 240 |||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||| Sbjct 202 GCTGCGGTTAAACTGTCTGATATAGACGGTGATGGCATGTTGGATTTTCATGAGTTTGCT 261 Query 241 CTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAA 300 | |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 262 CAGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAGAAGAAGAGGAAGATTATGGAA 321 Query 301 GCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATG 360 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct 322 GCTTTTAGAATGTATATTGCTGATGGGGAAGATTGCATTACCCCGGGAAGCTTGAAGATG 381 Query 361 ATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 420 |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 382 ATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGACGATTGCAAAGTTATGATTCAAGCT 441 Query 421 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGCGCTAA 480 ||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| Sbjct 442 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGACGAGTTTGCTCTCATGATGCGCTAA 501 > Ahg934750 jgi|Araly1|934750|scaffold_402738.1 Length=520 Score = 723 bits (391), Expect = 0.0 Identities = 447/475 (94%), Gaps = 0/475 (0%) Strand=Plus/Plus Query 1 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAAC 60 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 21 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTGGAGGACAAGAAC 80 Query 61 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 140 Query 121 GAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 180 |||||||| ||||||||||| || || |||||||||||||| |||||||||||||||||| Sbjct 141 GAGGAGCTCAAGAAGAGTTTCAACACATTGGGAGAGCAAATCTCTGATGAAGAAGCCGAG 200 Query 181 GCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCT 240 |||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||| Sbjct 201 GCTGCGGTTAAACTGTCTGATATAGACGGTGATGGAATGTTGGATTTTCATGAGTTTGCT 260 Query 241 CTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAA 300 | ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 261 CAACTTATCAAAGGCAATGATGAATTCACTGAAGAAGAGAAGAAGAGGAAGATAATGGAA 320 Query 301 GCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATG 360 |||||||||||||| ||||||||||| |||||||| ||||| |||| |||||||||||| Sbjct 321 GCTTTTAGAATGTATATTGCTGATGGGGAAGATTGTATTACCCCGGAAAGCTTGAAGATG 380 Query 361 ATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 420 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 381 ATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 440 Query 421 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGC 475 |||||| ||||||||||||||||||||||||||||||||| || |||||||||| Sbjct 441 TTTGATAACAATGCTGATGGAGTTCTAAGCTTTGATGAGTTTGCTCTCATGATGC 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17398948584 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5