BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76640.1
Length=480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927060 jgi|Araly1|927060|scaffold_202621.1 760 0.0
Ahg934750 jgi|Araly1|934750|scaffold_402738.1 723 0.0
> Ahg927060 jgi|Araly1|927060|scaffold_202621.1
Length=521
Score = 760 bits (411), Expect = 0.0
Identities = 457/480 (95%), Gaps = 0/480 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAAC 60
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 22 ATGAAGAATACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTGGAGGACAAGAAC 81
Query 61 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 82 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGATGGTAGAATCTCTGCA 141
Query 121 GAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 142 GAGGAGCTTAAGAAGAGTTTCAAGACATTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 201
Query 181 GCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCT 240
|||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 202 GCTGCGGTTAAACTGTCTGATATAGACGGTGATGGCATGTTGGATTTTCATGAGTTTGCT 261
Query 241 CTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAA 300
| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 262 CAGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAGAAGAAGAGGAAGATTATGGAA 321
Query 301 GCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATG 360
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 322 GCTTTTAGAATGTATATTGCTGATGGGGAAGATTGCATTACCCCGGGAAGCTTGAAGATG 381
Query 361 ATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 420
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 382 ATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGACGATTGCAAAGTTATGATTCAAGCT 441
Query 421 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGCGCTAA 480
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 442 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGACGAGTTTGCTCTCATGATGCGCTAA 501
> Ahg934750 jgi|Araly1|934750|scaffold_402738.1
Length=520
Score = 723 bits (391), Expect = 0.0
Identities = 447/475 (94%), Gaps = 0/475 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTAGAGGAGAAGAAC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 21 ATGAAGAACACTCAACGTCAGTTATCTTCATCTTTCATGAAATTCTTGGAGGACAAGAAC 80
Query 61 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGTAGAATCTCTGCA 140
Query 121 GAGGAGCTTAAGAAGAGTTTTAAGACGTTGGGAGAGCAAATGTCTGATGAAGAAGCCGAG 180
|||||||| ||||||||||| || || |||||||||||||| ||||||||||||||||||
Sbjct 141 GAGGAGCTCAAGAAGAGTTTCAACACATTGGGAGAGCAAATCTCTGATGAAGAAGCCGAG 200
Query 181 GCTGCGGTTAAACTCTCTGATATAGACGGTGATGGGATGTTGGATATTAATGAGTTTGCT 240
|||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 201 GCTGCGGTTAAACTGTCTGATATAGACGGTGATGGAATGTTGGATTTTCATGAGTTTGCT 260
Query 241 CTGCTTATCAAAGGGAATGATGAATTCACTGAGGAAGAAAAGAAGAGGAAGATAATGGAA 300
| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 261 CAACTTATCAAAGGCAATGATGAATTCACTGAAGAAGAGAAGAAGAGGAAGATAATGGAA 320
Query 301 GCTTTTAGAATGTACATTGCTGATGGAGAAGATTGCATTACTCCGGGGAGCTTGAAGATG 360
|||||||||||||| ||||||||||| |||||||| ||||| |||| ||||||||||||
Sbjct 321 GCTTTTAGAATGTATATTGCTGATGGGGAAGATTGTATTACCCCGGAAAGCTTGAAGATG 380
Query 361 ATGCTAATGAAGCTTGGTGAGTCTAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 420
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 381 ATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGATGATTGCAAAGTTATGATTCAAGCT 440
Query 421 TTTGATCTCAATGCTGATGGAGTTCTAAGCTTTGATGAGTTCGCCCTCATGATGC 475
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 441 TTTGATAACAATGCTGATGGAGTTCTAAGCTTTGATGAGTTTGCTCTCATGATGC 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17398948584
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5