BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76650.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476823 jgi|Araly1|476823|fgenesh2_kg.2__1953__AT1G76650.2 793 0.0
Ahg934750 jgi|Araly1|934750|scaffold_402738.1 412 1e-114
> Ahg476823 jgi|Araly1|476823|fgenesh2_kg.2__1953__AT1G76650.2
Length=688
Score = 793 bits (429), Expect = 0.0
Identities = 588/662 (89%), Gaps = 21/662 (3%)
Strand=Plus/Plus
Query 112 AAACTT-TGCCGGAAACTATCACCAAAGAGGGAAGATTCAGCCGGAGAGATACAACAACA 170
||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 43 AAAATTCTGCCGGAAACTATCACCAAAGAGGAAAGATTCAGGCGGAGAGATACAACAACA 102
Query 171 TAACAGTAGCAATGGTGAGGACAAGAACAGAGAGTTAGAGGCTGTTTTTTCTTACATGGA 230
||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 103 CAACAGCAACAATGGTGAGGACAAGAACAGAGACTTAGAGGCTGTTTTCGATTACATGGA 162
Query 231 TGCAAACAGAGACGGTAGAATCTCACCAGAAGAGCTTCAAAAGAGTTTCATGACATTGGG 290
|||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 163 TGCAAACAAAGACGGTAGAATCTCTGCAGAAGAGCTTCAAAAGAGTTTTATGACATTGGG 222
Query 291 AGAACAATTGTCTGATGAAGAAGCCGTAGCTGCTGTTAGATTGTCTGATACGGACGGAGA 350
||| ||||||||||| |||||||||| ||| || ||||||||||||||||| ||||||||
Sbjct 223 AGAGCAATTGTCTGACGAAGAAGCCGAAGCCGCGGTTAGATTGTCTGATACAGACGGAGA 282
Query 351 TGGGATGTTGGATTTTGAGGAATTTTCTCAGTTAATCAAAGTAGATGACGAAGAAGAGAA 410
||||||||| ||||||||||||||| ||||| ||||||||| ||| || || ||||||||
Sbjct 283 TGGGATGTTAGATTTTGAGGAATTTACTCAGCTAATCAAAGCAGACGATGAGGAAGAGAA 342
Query 411 GAAGATGGAGCTCAAGGGAGCGTTTAGACTGTATATTGCAGAAGGTGAAGATTGTATTAC 470
|||||| |||||||| | |||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 343 GAAGATAGAGCTCAAAGAAGCGTTTAAACTGTATATTTCAGAAGGTGAAGAGTGTATTAC 402
Query 471 ACCAAGAAGCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGATTG 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 403 TCCAAGAAGCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGACTG 462
Query 531 TAGAGTTATGATTAGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTT 590
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CAAAGTTATGATTAGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTT 522
Query 591 TGCTCTTATGATGCGCTAAGCCTCCAttgttgttgttgttgttgttgttgttgttCTTTT 650
|||||||||||||||||||||||||||||||||||||||| | | ||||||| | |
Sbjct 523 TGCTCTTATGATGCGCTAAGCCTCCATTGTTGTTGTTGTTAATCTC-TTGTTGTA-TATA 580
Query 651 ATTTAATCTCTTATTGTATATAATTTAATAGTTTGTGACCCAATAAATACGATTGTTATT 710
| |||| | | |||| | ||| |||| | | |||||| ||||||||||||
Sbjct 581 ACTTAAA-TAGT-TTGTG-A-AATGTAAT-G-------C--AATAAACACGATTGTTATT 626
Query 711 TGATTAAGGATCCATAT----GTGAAACTTTGTTATATTAGAGAAGATGtttttttAACA 766
||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 627 TGATTAATGATCCATATATATGTGAAACTTTGTTATATTAGAGAGGATGTTTTTTTAACA 686
Query 767 TG 768
||
Sbjct 687 TG 688
> Ahg934750 jgi|Araly1|934750|scaffold_402738.1
Length=520
Score = 412 bits (223), Expect = 1e-114
Identities = 379/451 (84%), Gaps = 24/451 (5%)
Strand=Plus/Plus
Query 187 GAGGACAAGAACAGAGAGTTAGAGGCTGTTTTTTCTTACATGGATGCAAACAGAGACGGT 246
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 69 GAGGACAAGAACAGAGACTTAGAGGCTGTGTTTGCTTACATGGATGCAAACAGAGACGGT 128
Query 247 AGAATCTCACCAGAAGAGCTTCAA-AAGAGTTTCATGACATTGGGAGAACAATTGTCTGA 305
|||||||| |||| ||||| ||| |||||||||| ||||||||||| ||| | |||||
Sbjct 129 AGAATCTCTGCAGAGGAGCT-CAAGAAGAGTTTCAACACATTGGGAGAGCAAATCTCTGA 187
Query 306 TGAAGAAGCCGTAG-CTGCTGTTAGATTGTCTGATACGGACGGAGATGGGATGTTGGATT 364
||||||||||| || |||| |||| | ||||||||| ||||| ||||| ||||||||||
Sbjct 188 TGAAGAAGCCG-AGGCTGCGGTTAAACTGTCTGATATAGACGGTGATGGAATGTTGGATT 246
Query 365 TTGAGGAATTTTCTCAG-TTAATCAAAGT-A--GATGA---C---GAAGAAGAGAAGAAG 414
|| | || ||| |||| ||| |||||| | ||||| | |||||||||||||||
Sbjct 247 TTCATGAGTTTGCTCAACTTA-TCAAAGGCAATGATGAATTCACTGAAGAAGAGAAGAAG 305
Query 415 ATGGA-GCTCAAGGGA-GCGTTTAGACTGTATATTGCAGAAGGTGAAGATTGTATTACAC 472
| ||| | | || ||| || |||||| |||||||||| || || |||||||||||||| |
Sbjct 306 A-GGAAGAT-AATGGAAGCTTTTAGAATGTATATTGCTGATGGGGAAGATTGTATTACCC 363
Query 473 CAAGAA-GCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGATTGT 531
| ||| |||||||||||||||||| ||||||||| || || |||||||||||||||||
Sbjct 364 CG-GAAAGCTTGAAGATGATGCTAATGAAGCTAGGTGAGTCGAGAACCACTGATGATTGC 422
Query 532 AGAGTTATGATT-AGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTT 590
| |||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 423 AAAGTTATGATTCAA-GCTTTTGATAACAATGCTGATGGAGTTCTAAGCTTTGATGAGTT 481
Query 591 TGCTCTTATGATGCGCTAAGCCTCCAttgtt 621
|||||| ||||||| ||||| | | |||||
Sbjct 482 TGCTCTCATGATGCTTTAAGCTTTC-TTGTT 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5