BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76660.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476825 jgi|Araly1|476825|fgenesh2_kg.2__1955__AT1G76660.1 2254 0.0
> Ahg476825 jgi|Araly1|476825|fgenesh2_kg.2__1955__AT1G76660.1
Length=1849
Score = 2254 bits (1220), Expect = 0.0
Identities = 1476/1590 (93%), Gaps = 55/1590 (3%)
Strand=Plus/Plus
Query 384 AGCAGGATCAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTTTCAAGTCAC 443
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 283 AGCAGGAACAGAGGAAAAGGTGGGGAGGTTGTTTAGGAGTGTTCTCTTGTCTCAAGTCAC 342
Query 444 AAAAAGGTGGAAAAAGAATTGTACCTGCTTCTCGCATTCCTGAAGGTGGCAATGTCTCAG 503
||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 343 AAAAAGGTGGAAAAAGAATTGTACCAGCATCTCGCATTCCTGAAGGCGGCAATGTCTCGG 402
Query 504 CTTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGA 563
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CCTCACAACCTAATGGAGCTCATCAAGCTGGTGTCTTAAATAATCAAGCTGCAGGAGGGA 462
Query 564 TTAATCTATCACTAT-TGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCAGCTCTT 622
|||||||||| || | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 463 TTAATCTATCTCT-TCTGGCTCCACCTTCCTCTCCTGCTTCCTTCACCAATTCGGCTCTT 521
Query 623 CCTTCAACTACTCAGTCTCCAAACTGCTACTTATCTCTGGCTGCAAATTCACCGGGAGGT 682
|||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 522 CCTTCAACCGCTCAGTCACCAAACTGCTACTTATCGCTGGCTGCGAATTCACCGGGAGGT 581
Query 683 CCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTAGTCTCACCG 742
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 582 CCTTCGTCGAGTATGTATGCCACTGGACCATATGCTCATGAAACCCAATTGGTCTCACCG 641
Query 743 CCTGTTTTCTCTACTTTCACCACCGAGCCATCGACTGCTCCTTTCACTCCTCCTCCAGAG 802
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 642 CCTGTTTTCTCTACATTCACCACCGAGCCTTCGACTGCTCCTTTCACTCCTCCTCCAGAG 701
Query 803 CTTGCACGTCTGACTGCCCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCC 862
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTTGCACGCCTGACTGCTCCTTCTTCACCTGATGTACCTTATGCTCGTTTCTTGACTTCC 761
Query 863 TCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAA----T-----GATCTTCAAGCT 913
|||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 762 TCCATGGATCTCAAGAACTCTGGTAAAGGTCATTACAATGTTTCAAGCGACCTTCAAGCT 821
Query 914 ACTTATTCTCTTTATCCCGGAAGTCCAGCCAGTGCTCTTAGATCACCAATCTCTCGGGCT 973
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 822 ACATATTCTCTTTATCCCGGAAGTCCAGCCAGCGCTCTTAGATCACCAATCTCTCGGGCT 881
Query 974 TCGGGAGATGGGTTATTGTCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAAC 1033
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCGGGAGATGGGTTATTATCGCCTCAAAATGGTAAATGCTCAAGGAGTGATTCTGGCAAC 941
Query 1034 ACATTCGGGTATGACACAAATGGAGTCTCAACACCTTTGCAGGAGTCAAACTTCTTCTGT 1093
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 942 ACCTTTGGGTATGACACAAATGGAGTCTCGACACCTTTGCAGGAGTCAAACTTCTTCTGT 1001
Query 1094 CCTGAAACTTTTGCCAAGTTTTACCTGGATCACGACCCTTCAGTTCCTCAAAACGGTGGA 1153
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1002 CCTGAAACTTTTGCCAAGTTTTACCTGGATCACGATCCTTCGGTTCCTCAAAACGGTGGA 1061
Query 1154 AGATTAAGCGTGTCGAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAAC 1213
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AGATTAAGCGTGTCCAAGGATTCAGATGTGTATCCTACAAATGGATATGGAAACGGGAAC 1121
Query 1214 CAGAATAGGCAGAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGGGCG 1273
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1122 CAGAATAGGCAAAACAGAAGTCCCAAGCAAGACATGGAGGAGTTAGAAGCTTACAGAGCT 1181
Query 1274 TCCTTTGGTTTTAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGAT 1333
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TCCTTTGGGTTCAGTGCAGATGAAATCATCACAACTAGTCAGTATGTAGAGATCACTGAT 1241
Query 1334 GTGATGGATGGGTCTTTTAACACATCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTC 1393
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1242 GTGATGGATGATTCTTTTAACACAGCAGCTTACTCTCCAAGCGATGGACAAAAGCTTCTT 1301
Query 1394 AGAAGAGAAGCAAATTTGCTGAGTCAAACAAGCCCCAAATCAGAAGCCGATCTTGATTCA 1453
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1302 AGAAGAGAAGCAAATCTGCTGAGTCAAACAAGCCCCAAATCAGAAGCAGATCTTGATTCA 1361
Query 1454 CAAGTTGTAGACTTCCAATCACCAAAGTCATCAAATAGCTACAAAGATCACAAACAAAGA 1513
||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 1362 CAAGTTGTAGACTTCCATTCACCAAAGGCATCAAATGGCTACAAAGATCACAAGCAAAGA 1421
Query 1514 AACCGGATCCATGCGGATGAAGAGGCTTTATTGTCGAGAGTGGGGTCTGTAAAAGGAAGC 1573
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1422 AACCGGATCCATGCGGATGAAGAGGCCTTACTGTCGAGAGTGGGGTCTGTAAAAGGAAGC 1481
Query 1574 AGAAGCTATCATATTTCAAGCTCTGATGCAGAGGTCGAGTACAGAAGAGGAAGAAGCTTA 1633
|||||||||| ||| |||||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1482 AGAAGCTATCCTATATCAAGCTCGGATGCAGAGGTCGAATACCGAAGAGGAAGAAGCTTA 1541
Query 1634 AGGGAAAGCAGAGAGAACAGACACAGGAAAGCCTGATCAAGAACAACAACAACAAGAAGA 1693
|||||||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 1542 AGGGAAAGCAGAGAGAACAGACACAGGATAGCCTGATCAAGAACAA---------GAA-A 1591
Query 1694 AGAAAGCCTGATCTGTTCTTAAAGTCTTCTAAGGTCTAAAAAGT-T-------G-ATCTT 1744
| ||| | |||||||||| |||||||||| |||||||||| | | |||||
Sbjct 1592 -GCCAGC-T---CTGTTCTTAAGGTCTTCTAAGTTCTAAAAAGTATTAAATATGGATCTT 1646
Query 1745 GTGATGCTAACTCTTGAGATAAGAAGTCTAGTTTTT---AA-Gtatatatagatatatat 1800
|||||||||||||| |||||| || |||||||||| || ||||||||||||||||||
Sbjct 1647 GTGATGCTAACTCTCAAGATAATAA-TCTAGTTTTTTTTAAAGTATATATAGATATATAT 1705
Query 1801 a-a-atataA-T-TA-----CAGATGGTTTTTTAGTAGAATGATGTTATATATAAGAAGA 1851
| | |||||| | || |||||||||||| ||||||||| | | |||||||||| ||
Sbjct 1706 ATATATATAAATATAAATTACAGATGGTTTTT-AGTAGAATG-T-T-ATATATAAGA-GA 1760
Query 1852 GAGCAAGGGTGAGAAAGTGAATGCTTGTTTTTTAGTTTGACATGGCTTTTTTGTAAGACC 1911
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1761 GAGCAAGGGTGAGAAAGTGAATGCTTGTTTTT-AGTTTGACATGGCTTTTTTGTAAGACC 1819
Query 1912 CCATCTTTTATCTAATTGCACCAATCTGTT 1941
||||||||||||||||||||||||||||||
Sbjct 1820 CCATCTTTTATCTAATTGCACCAATCTGTT 1849
Score = 148 bits (80), Expect = 1e-34
Identities = 86/89 (97%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1 ATTCTGATTAAAATAGAAATGCTTTTTCCTTGGTAAGGATCATCTTTTCATGCCGATTGC 60
||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 1 ATTCTGATTAAAATAGAAATGCTTTTTCCATCGTAAGGATCATCTTTCCATGCCGATTGC 60
Query 61 ATCAGTGCAGATTTCCTTATTTACTCTTT 89
|||||||||||||||||||||||||||||
Sbjct 61 ATCAGTGCAGATTTCCTTATTTACTCTTT 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5