BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76690.1
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476828 jgi|Araly1|476828|fgenesh2_kg.2__1958__AT1G76680.1 1664 0.0
> Ahg476828 jgi|Araly1|476828|fgenesh2_kg.2__1958__AT1G76680.1
Length=1189
Score = 1664 bits (901), Expect = 0.0
Identities = 1102/1198 (92%), Gaps = 17/1198 (1%)
Strand=Plus/Plus
Query 90 GAAATGGTAAACGCAGAAGCAAAACAGAGTGTCCCTCTTCTCAC-CCCTTATAAGATGGG 148
||||||| |||||||| ||||||||||||| | ||||||||||| ||| |||||||||||
Sbjct 1 GAAATGGAAAACGCAGTAGCAAAACAGAGTATACCTCTTCTCACTCCC-TATAAGATGGG 59
Query 149 AAGATTCAATCTTTCTCATAGGGTTGTTCTAGCACCATTGACGAGACAGAAATCGTACGG 208
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 AAGATTCAATCTTTCCCATAGGGTTGTTCTAGCACCATTGACGAGACAGAGATCGTACGG 119
Query 209 AAGCGTTCCTCAGCCTCACGCTATCTTGTATTACTCTCAGAGAACGTCACCGGGAGGTTT 268
|| ||||||||||||||||||| | | |||||||||||||||||| | | ||||||||
Sbjct 120 AAACGTTCCTCAGCCTCACGCTGCCGTATATTACTCTCAGAGAACGACTCAAGGAGGTTT 179
Query 269 TCTCATCGCTGAAGCCACCGGGGTTTCAGATACAGCTCAAGGGTATCCAGATACACCTGG 328
||||||| ||||||||||||| |||||||||||||||||||| ||| |||||| |||||
Sbjct 180 TCTCATCACTGAAGCCACCGGAGTTTCAGATACAGCTCAAGGCTATGAAGATACTCCTGG 239
Query 329 GATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTACATGCCAA 388
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GATATGGACTAAAGAGCATGTGGAGGCATGGAAGCCAATCGTTGATGCTGTTCATGCCAA 299
Query 389 AGGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGCGTTTCTAATCGCGGTTTTCA 448
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 300 AGGTGGTATCTTCTTCTGTCAGATCTGGCATGTTGGCCGTGTTTCTAATCGCGGGTTTCA 359
Query 449 GCCAA--GGAGGCAAGCTCCTATCTCTTGTACGGGGAAGCCAATT-ATGCCTCAAATGCG 505
||||| ||| |||||||||||||||||| ||| |||||| || ||||||||||| ||
Sbjct 360 GCCAAATGGA--CAAGCTCCTATCTCTTGTTCGGATAAGCCA-TTGATGCCTCAAATCCG 416
Query 506 -TGCTAATGGCATTGATGAAGC--TCGCTTTACCCCTCCAAGACGTCTAAGTATCGAAGA 562
| ||||||||||||| ||||| | | ||||| ||||||||||| || ||| |||||||
Sbjct 417 CT-CTAATGGCATTGACGAAGCCAT-G-TTTACTCCTCCAAGACGGCTGAGTGTCGAAGA 473
Query 563 AATCCCCGGCATTGTCAATGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGGTTT 622
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 474 AATCCCCGGCATTGTCAACGATTTTAGGCTTGCTGCAAGAAATGCTATGGAAGCTGGCTT 533
Query 623 TGATGGAGTTGAGATTCATGGAGCTCATGGCTATCTGATTGATCAGTTCATGAAGGACAA 682
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 534 TGACGGAGTTGAGATTCATGGAGCTCATGGCTATCTGATTGATCAGTTCATGAAGGATAC 593
Query 683 AGTGAATGACAGAACTGATGAATATGGTGGATCATTGCAAAACCGTTGCAAATTTGCTCT 742
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 594 AGTGAATGATAGAACTGATGAATACGGTGGATCATTGCAAAACCGTTGCAAATTTGCTTT 653
Query 743 GGAAGTAGTCGATGCAGTGGCTAAGGAGATCGGGCCAGACCGTGTTGGAATCAGGCTCTC 802
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGAAATAGTCGATGCAGTGGCCAAGGAGATCGGGCCAGACCGTGTTGGAATCAGGCTCTC 713
Query 803 TCCGTTTGCAGACTATATGGAATCCGGAGACACTAATCCAGAAGCATTAGGGCTGTACAT 862
||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 714 TCCGTTTGCAGACTACATGGAATCCGGAGACACTAATCCAGGAGCATTGGGGCTTTACAT 773
Query 863 GGTGGAATCTCTGAACAAATATGGAATCCTCTACTGTCATATGATTGAACCCAGAATGAA 922
|| |||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 774 GGCGGAATCTCTGAACAAATACGGAATCCTCTACTGTCATGTGATTGAAGCCAGAATGAA 833
Query 923 AACAGTGGGAGAAATAGCAGCGTGTTCTCACACACTAATGCCAATGAGGGAAGCCTTTAA 982
|||| |||| |||||| |||| ||| |||||||||| ||||| |||||| ||||||||||
Sbjct 834 AACAATGGGGGAAATATCAGCTTGTCCTCACACACTTATGCCGATGAGGAAAGCCTTTAA 893
Query 983 GGGGACTTTCATCTCTGCAGGAGGTTTCACGAGGGAAGATGGGAATGAGGCCGTGGCAAA 1042
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 894 GGGGACTTTCATCTCTGCAGGAGGTTTCACGAGAGAAGATGGGAATGAGGCCGTGGCAAA 953
Query 1043 GGGACGAACTGATCTTGTGGCTTATGGTCGATGGTTTCTAGCCAACCCAGACCTGCCAAA 1102
|||||| || ||||| |||||||| |||||||||||||| ||||| || |||||||||||
Sbjct 954 GGGACGGACCGATCTGGTGGCTTACGGTCGATGGTTTCTGGCCAATCCGGACCTGCCAAA 1013
Query 1103 GCGGTTCCAACTGGATGCACCGCTGAATAAATACAATAGGTCAACGTTTTACACTTCTGA 1162
| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1014 GAGGTTCCAAGTGGATGCACCGCTGAATAAATACGATAGACCAACGTTTTACACTTCTGA 1073
Query 1163 TCCTGTCGTGGGTTACACCGATTACCCTTCCCTTGAATCAACAGCTTAAAATCGTGTTAT 1222
|||||||||||||||||| |||||||||| ||| |||||||||||||||||| ||||||
Sbjct 1074 TCCTGTCGTGGGTTACACTGATTACCCTTTCCTCGAATCAACAGCTTAAAAT--TGTTAT 1131
Query 1223 CAGTAATGTAATGTGTTTCCCTAATGATGTAATAAGTTTCTGGCTTTTG-TTTATACT 1279
|| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1132 CAATAATGTAATGTGTTTCCCTTATGATGTAATAAGTTTCTGGCTTTTTATTTATACT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5