BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76700.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476830 jgi|Araly1|476830|fgenesh2_kg.2__1960__AT1G76700.1 2438 0.0
> Ahg476830 jgi|Araly1|476830|fgenesh2_kg.2__1960__AT1G76700.1
Length=1606
Score = 2438 bits (1320), Expect = 0.0
Identities = 1505/1592 (95%), Gaps = 22/1592 (1%)
Strand=Plus/Plus
Query 38 AAAGATAGATAGAAAGAAAGAGCCAACTTTAAAAGCTTAGCGGTTGATTTCGAAATCTCG 97
|||| || || ||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 25 AAAG-TAAATTGAAAGAAAGAGCC-A----AAAAGCTTAGCGGTTGATTTTGAAATCTCG 78
Query 98 TCGCCGGCGCGTGGAGTCTTTTCGTCGGA---CAACAACA-AGAGAAAAGAGATTTGTGG 153
||||||||||||||||| | ||||||||| ||||| | | ||| |||||||||||||
Sbjct 79 TCGCCGGCGCGTGGAGTGTATTCGTCGGAGTTAAACAAGAGAAAGAGAAGAGATTTGTGG 138
Query 154 TGTTCTTCTGCTTAGAATTGTTGTTTTCCATCTCCGGCAG-TGAGATTTGGTGGAGAA-- 210
||||||||||||||| ||| ||| |||||||||||| | |||||||||||||||||
Sbjct 139 TGTTCTTCTGCTTAG-TTTGCTGTCATCCATCTCCGGC-GATGAGATTTGGTGGAGAATT 196
Query 211 TT--TTGATTTGTGATCGATGGTTAAGGAAACAGAGTACTACGATGTGCTCGGAGTTAGC 268
|| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 197 TTGATTGATTTGTGATCGATGGTGAAGGAAACGGAGTACTACGATGTGCTCGGAGTTAGC 256
Query 269 CCAACTGCTACAGAATCTGAGATTAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCAT 328
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 257 CCAACTGCTACAGAAGCTGAGATCAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCAT 316
Query 329 CCTGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTCTTGGGAGAGGCC 388
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 317 CCAGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTTTTGGGAGAGGCC 376
Query 389 TATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGCAAGTCAGGA 448
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 377 TATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGGAAGTCAGGG 436
Query 449 ATCTCAACTGATGCAATCATCGATCCTGCTGCAATATTTGCAATGCTATTTGGCAGCGAA 508
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 437 ATCTCCACTGATGCAATCATCGATCCTGCGGCAATATTTGCAATGCTATTTGGCAGCGAA 496
Query 509 CTTTTTGAAGGGTACATAGGACAGCTTGCTATGGCATCTATGGCTTCACTTGATATCTTC 568
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 497 CTTTTTGAAGAGTACATAGGACAGCTTGCTATGGCATCAATGGCTTCACTCGATATCTTC 556
Query 569 ACGGAAGGGGATCAGTTTGATACCAAAAAGATACAAGAAAAATTGAGGATTGTTCAGAAA 628
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 557 ACTGAAGGGGATCAGTTTGATACCAAAAAGATACAAGAAAAAATGAGGATTGTCCAGAAA 616
Query 629 GAAAGAGAAGACAAGCTTGCTCAGATTCTGAAAGACCGACTCAACGAATATGTAATAAAC 688
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 617 GAAAGAGAAGACAAGCTTGCTCAGGTTCTCAAAGACCGACTCAACGAATATGTGATAAAC 676
Query 689 AAAGACGAATTTATCAGTAATGCTGAAGCTGAAGTAGCAAGACTCT-CAAATGCAGCTTA 747
| |||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||
Sbjct 677 AGAGACGAATTTATCAGTAACGCTGAAGCTGAAGTAGCTAGACT-TACAAATGCAGCTTA 735
Query 748 TGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGCT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGCT 795
Query 808 AGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAACAAAGG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 AGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAACAAAGG 855
Query 868 TCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCGTTGTTCCAGTTGCA 927
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 856 TCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCTTTGTTCCAGTTGCA 915
Query 928 GGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTTGAGGA 987
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 916 GGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTCGAGGA 975
Query 988 ATACCTTCAGGCCCATAAAAGAGTGATGATTGATTCACTGTGGAAGCTCAATGTCGCTGA 1047
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 976 ATACCTTCAGGCCCATAAAAGAGTGATGATTGATTCGCTGTGGAAGCTCAATGTTGCTGA 1035
Query 1048 TATCGAAGCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCCAGAAGCCAAAAG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TATCGAAGCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCCAGAAGCCAAAAG 1095
Query 1108 AGAGGAGCTTCGTACAAGAGCAAGAGGTTTAAAAGCTCTGGGGAGGATCTTTCAGAGAGC 1167
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 1096 AGAGGAGCTTCGTACAAGAGCAAGAGGGTTAAAAACTCTGGGGAGGATCTTCCAGAGAGC 1155
Query 1168 CAAAACAGCTAGTGAGAGTGATCCTTTAGAAAATAGTGAACCTCAAAAGTTAAACGGAAA 1227
||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 1156 CAAGACAGCTAGTGAGAGTGATCCTTTAGCAAATAATGAACCTCAAAAATTAAACGGAAA 1215
Query 1228 TGGAAAGAACCACGATGAGGATACTTCTACATCACCAAAATCCAGTGAAGCATCTCACTC 1287
||||| | || || |||| ||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 1216 TGGAAGGGACGACCATGATGATACATCTACATCACCAAAATCCAATGAAGCATTTCACTC 1275
Query 1288 CACCTCTGGTCCTCAGGAACCACAAAGCCCCTACGTGGAAGAATTCAAACTTGGAGATGA 1347
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1276 TACCTCTGGTCCTCAGGAACCACAAAGCCCCTACGTGGAAGAATTCAAAATTGGAGATGA 1335
Query 1348 ACAATTCAACTATTACTTCCCACGACCAGCGCCACCTCCTGGCGCAGGGAAATACTCTTC 1407
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1336 ACAATTCAACTATTACTTCCCACGACCAGCGCCACCTCCTGGCGCAGGGAAACACTCTTC 1395
Query 1408 CTCTGGCTATGATTGATTCAGGTGAGATCGGGGCATATATATAT--CAGTCTTAGCATAT 1465
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1396 GACTGGCTATGATTGATTCAGGTGAGATCGGGGCATATATATATATCAGTCTTAGCATAT 1455
Query 1466 TTCTATTGCAGTTGTGTACCATTATGTAAAATTATTCCTTTTTTCTTTTGGTTTTGGCTT 1525
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1456 TGATATTGCAGTTGTGTACCATTATGTAAAATTATTCCTTTTT-CTTTTGGTTTTGGCTT 1514
Query 1526 GTTAGAAGAAAATGATTGATGTTGAAAGCACATATAAAAGCTCTTTTGTGATAATGTATC 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1515 GTTAGAAGAAAATGATTGATGTTGAAAGCACATATAAAAGCTCTTTTGTGATAATGTGTC 1574
Query 1586 CATGTAAATTATTATGAAGGTATAATGACTTA 1617
|||| |||||||| ||||||| ||||||||||
Sbjct 1575 CATGGAAATTATTGTGAAGGTGTAATGACTTA 1606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5