BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76710.1

Length=1751
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316589 jgi|Araly1|316589|fgenesh1_pm.C_scaffold_2001622          1814    0.0  


> Ahg316589 jgi|Araly1|316589|fgenesh1_pm.C_scaffold_2001622
Length=1578

 Score = 1814 bits (982),  Expect = 0.0
 Identities = 1155/1232 (94%), Gaps = 38/1232 (3%)
 Strand=Plus/Plus

Query  115   ATGCAATTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAATATGAACACATT  174
             ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1     ATGCAGTTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAGTATGAACACATT  60

Query  175   TATCAAAATGACTTCTCTTATCGAAAGCACAAGAAACAAAAGGAAGAAGATATATCTATC  234
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct  61    TATCAAAATGACTTCTCATATCGAAAGCACAAGAAACAGAAGGAAGAAGATATTTCTATC  120

Query  235   TGCGAATGCAAGTTTGATTTCGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT  294
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121   TGCGAATGCAAGTTTGATTTTGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT  180

Query  295   GTCATTACCAACACTGAATGTACTCCTGGTTACTGCCCCTGTGGTGTCTATTGCAAGAAT  354
             |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  181   GTCATTACCAACACCGAATGTACTCCTGGATACTGCCCCTGTGGTGTCTATTGCAAGAAT  240

Query  355   CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGTGGT  414
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241   CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGCGGT  300

Query  415   TGGGGACTAGTGGCTCTTGAAGAGATAAAGGCGGGGCAATTTATAATGGAGTACTGTGGT  474
             ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||| 
Sbjct  301   TGGGGACTAGTGGCTCTTGAAGACATAAAGGCGGGACAGTTTATAATTGAGTACTGTGGC  360

Query  475   GAAGTAATATCATGGAAAGAAGCAAAGAAG-AGGGCTCAAACTTATGAAACTCATGGTGT  533
             |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||
Sbjct  361   GAAGTAATATCATGGAAAGAAGCAAAG-CGTAGGGCTCAAACTTATGAAACTCATGGTGT  419

Query  534   CAAGGATGCATACATTATATCTCTCAATGCATCTGAGGCTATTGATGCCACTAAGAAGGG  593
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  420   CAAGGATGCATACATTATATCTCTCAATGCGTCTGAGGCTATTGATGCCACTAAGAAGGG  479

Query  594   AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA  653
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480   AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA  539

Query  654   TGTACTGGGAGAAGTTAGGGTTGGGATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA  713
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  540   TGTACTGGGAGAAGTTAGGGTTGGAATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA  599

Query  714   ATTGGCTTACGACTATAATTTTGAATGGTACGGTGGTGCCAAAGTGCGTTGTCTCTGTGG  773
             |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  600   ATTGGCCTACGACTATAATTTTGAATGGTATGGTGGTGCCAAAGTCCGTTGTCTCTGTGG  659

Query  774   TGCGGTTGCATGCTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGG-AGG-----A  827
             ||| || ||||| ||||||||||||||||||||||||||||||||||||| | |     |
Sbjct  660   TGCAGTCGCATGTTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGGCAAGTCCTTA  719

Query  828   --T-A-CAT---A-T-G----TA--T--G---GG-AGGATGGTGACGATCGGTATTCAGT  866
               | | |||   | | |    ||  |  |   || |||||||||| ||||||||||||||
Sbjct  720   CATTATCATCCTAATAGAGGATACATATGTATGGGAGGATGGTGATGATCGGTATTCAGT  779

Query  867   TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCTTCTAAGAA  926
             ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  780   TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCCTCTAAGAA  839

Query  927   TGGCGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA  986
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  840   TGACGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA  899

Query  987   GTCTACTGCTCTGAATATTCAACAGCAATCAGATTCAACTCCAACTCCTATGGAGGAAGA  1046
             |||||||||||||| | ||||   |||||||||||||||   | | | ||||||||||||
Sbjct  900   GTCTACTGCTCTGACTGTTCA---GCAATCAGATTCAAC---A-C-C-TATGGAGGAAGA  950

Query  1047  TGTCGTCACGGAGACTGTTAAAACCGAAACATCTGAAGACATGAAGCTGCTCTCACAAAA  1106
             ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  951   TGTTGTCACGGAGACTGTTAAAACCGAAACAGCTGAAGACATGAAGCTGCTCTCACAAAA  1010

Query  1107  TTCACAAGAAGATTCATCGCCAAAGACTGCAATTGTATCACGGGTTCACGGTAACATTTC  1166
             ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| 
Sbjct  1011  TTCACAAGAAGATTCATCGCCGAAGACTGCAATTGTATCACGGGTTCGCGGTAACATTTA  1070

Query  1167  CAAGATCAAGTCCGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGAAAAAC  1226
             ||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1071  CAAAATTAAGTCTGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGGAAAAC  1130

Query  1227  AAAGAATGTCGCTCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA  1286
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1131  AAAGAATGTCGCCCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA  1190

Query  1287  AGAAGCTCAAGATGAAGTTCTCAAATACGAGG  1318
             ||||||||||||||||||||||||||||||||
Sbjct  1191  AGAAGCTCAAGATGAAGTTCTCAAATACGAGG  1222


 Score =  481 bits (260),  Expect = 9e-135
 Identities = 272/278 (98%), Gaps = 0/278 (0%)
 Strand=Plus/Plus

Query  1316  AGGAGGTGAAGAAGGAAGCAGCAGTACGACTCTCGTCATTGTACGACGAGATAAGGCCGG  1375
             |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  1301  AGGAGGTGAAGAAGGAGGCAGCAGTACGACTCTCGTCATTGTACGATGAGATAAGGCCAG  1360

Query  1376  CGATTGAGGAGCATGAAAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT  1435
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1361  CGATTGAGGAGCATGAGAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT  1420

Query  1436  GGATACAAGCAAGCTGTAATAAACTCAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA  1495
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1421  GGATACAAGCAAGCTGTAATAAACTAAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA  1480

Query  1496  AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAAGCAG  1555
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1481  AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAGGCAG  1540

Query  1556  GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA  1593
             ||||||||||||||||||||||||||||||||||||||
Sbjct  1541  GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA  1578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 65705672625


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5