BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76710.1
Length=1751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316589 jgi|Araly1|316589|fgenesh1_pm.C_scaffold_2001622 1814 0.0
> Ahg316589 jgi|Araly1|316589|fgenesh1_pm.C_scaffold_2001622
Length=1578
Score = 1814 bits (982), Expect = 0.0
Identities = 1155/1232 (94%), Gaps = 38/1232 (3%)
Strand=Plus/Plus
Query 115 ATGCAATTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAATATGAACACATT 174
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGCAGTTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAGTATGAACACATT 60
Query 175 TATCAAAATGACTTCTCTTATCGAAAGCACAAGAAACAAAAGGAAGAAGATATATCTATC 234
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 61 TATCAAAATGACTTCTCATATCGAAAGCACAAGAAACAGAAGGAAGAAGATATTTCTATC 120
Query 235 TGCGAATGCAAGTTTGATTTCGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT 294
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCGAATGCAAGTTTGATTTTGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT 180
Query 295 GTCATTACCAACACTGAATGTACTCCTGGTTACTGCCCCTGTGGTGTCTATTGCAAGAAT 354
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTCATTACCAACACCGAATGTACTCCTGGATACTGCCCCTGTGGTGTCTATTGCAAGAAT 240
Query 355 CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGTGGT 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGCGGT 300
Query 415 TGGGGACTAGTGGCTCTTGAAGAGATAAAGGCGGGGCAATTTATAATGGAGTACTGTGGT 474
||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 301 TGGGGACTAGTGGCTCTTGAAGACATAAAGGCGGGACAGTTTATAATTGAGTACTGTGGC 360
Query 475 GAAGTAATATCATGGAAAGAAGCAAAGAAG-AGGGCTCAAACTTATGAAACTCATGGTGT 533
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 361 GAAGTAATATCATGGAAAGAAGCAAAG-CGTAGGGCTCAAACTTATGAAACTCATGGTGT 419
Query 534 CAAGGATGCATACATTATATCTCTCAATGCATCTGAGGCTATTGATGCCACTAAGAAGGG 593
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 CAAGGATGCATACATTATATCTCTCAATGCGTCTGAGGCTATTGATGCCACTAAGAAGGG 479
Query 594 AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA 539
Query 654 TGTACTGGGAGAAGTTAGGGTTGGGATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA 713
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TGTACTGGGAGAAGTTAGGGTTGGAATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA 599
Query 714 ATTGGCTTACGACTATAATTTTGAATGGTACGGTGGTGCCAAAGTGCGTTGTCTCTGTGG 773
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 600 ATTGGCCTACGACTATAATTTTGAATGGTATGGTGGTGCCAAAGTCCGTTGTCTCTGTGG 659
Query 774 TGCGGTTGCATGCTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGG-AGG-----A 827
||| || ||||| ||||||||||||||||||||||||||||||||||||| | | |
Sbjct 660 TGCAGTCGCATGTTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGGCAAGTCCTTA 719
Query 828 --T-A-CAT---A-T-G----TA--T--G---GG-AGGATGGTGACGATCGGTATTCAGT 866
| | ||| | | | || | | || |||||||||| ||||||||||||||
Sbjct 720 CATTATCATCCTAATAGAGGATACATATGTATGGGAGGATGGTGATGATCGGTATTCAGT 779
Query 867 TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCTTCTAAGAA 926
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCCTCTAAGAA 839
Query 927 TGGCGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA 986
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGACGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA 899
Query 987 GTCTACTGCTCTGAATATTCAACAGCAATCAGATTCAACTCCAACTCCTATGGAGGAAGA 1046
|||||||||||||| | |||| ||||||||||||||| | | | ||||||||||||
Sbjct 900 GTCTACTGCTCTGACTGTTCA---GCAATCAGATTCAAC---A-C-C-TATGGAGGAAGA 950
Query 1047 TGTCGTCACGGAGACTGTTAAAACCGAAACATCTGAAGACATGAAGCTGCTCTCACAAAA 1106
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 951 TGTTGTCACGGAGACTGTTAAAACCGAAACAGCTGAAGACATGAAGCTGCTCTCACAAAA 1010
Query 1107 TTCACAAGAAGATTCATCGCCAAAGACTGCAATTGTATCACGGGTTCACGGTAACATTTC 1166
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1011 TTCACAAGAAGATTCATCGCCGAAGACTGCAATTGTATCACGGGTTCGCGGTAACATTTA 1070
Query 1167 CAAGATCAAGTCCGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGAAAAAC 1226
||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1071 CAAAATTAAGTCTGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGGAAAAC 1130
Query 1227 AAAGAATGTCGCTCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA 1286
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AAAGAATGTCGCCCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA 1190
Query 1287 AGAAGCTCAAGATGAAGTTCTCAAATACGAGG 1318
||||||||||||||||||||||||||||||||
Sbjct 1191 AGAAGCTCAAGATGAAGTTCTCAAATACGAGG 1222
Score = 481 bits (260), Expect = 9e-135
Identities = 272/278 (98%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 1316 AGGAGGTGAAGAAGGAAGCAGCAGTACGACTCTCGTCATTGTACGACGAGATAAGGCCGG 1375
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1301 AGGAGGTGAAGAAGGAGGCAGCAGTACGACTCTCGTCATTGTACGATGAGATAAGGCCAG 1360
Query 1376 CGATTGAGGAGCATGAAAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT 1435
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 CGATTGAGGAGCATGAGAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT 1420
Query 1436 GGATACAAGCAAGCTGTAATAAACTCAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA 1495
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1421 GGATACAAGCAAGCTGTAATAAACTAAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA 1480
Query 1496 AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAAGCAG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1481 AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAGGCAG 1540
Query 1556 GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA 1593
||||||||||||||||||||||||||||||||||||||
Sbjct 1541 GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65705672625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5