BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76710.1 Length=1751 Score E Sequences producing significant alignments: (Bits) Value Ahg316589 jgi|Araly1|316589|fgenesh1_pm.C_scaffold_2001622 1814 0.0 > Ahg316589 jgi|Araly1|316589|fgenesh1_pm.C_scaffold_2001622 Length=1578 Score = 1814 bits (982), Expect = 0.0 Identities = 1155/1232 (94%), Gaps = 38/1232 (3%) Strand=Plus/Plus Query 115 ATGCAATTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAATATGAACACATT 174 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGCAGTTTTCTTGTGATCCTGATCAAGAAGGAGATGAGCTGCCACAGTATGAACACATT 60 Query 175 TATCAAAATGACTTCTCTTATCGAAAGCACAAGAAACAAAAGGAAGAAGATATATCTATC 234 ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 61 TATCAAAATGACTTCTCATATCGAAAGCACAAGAAACAGAAGGAAGAAGATATTTCTATC 120 Query 235 TGCGAATGCAAGTTTGATTTCGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT 294 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGCGAATGCAAGTTTGATTTTGGAGACCCTGACAGTGCTTGTGGTGAGAGATGCCTCAAT 180 Query 295 GTCATTACCAACACTGAATGTACTCCTGGTTACTGCCCCTGTGGTGTCTATTGCAAGAAT 354 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 GTCATTACCAACACCGAATGTACTCCTGGATACTGCCCCTGTGGTGTCTATTGCAAGAAT 240 Query 355 CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGTGGT 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 CAGAAGTTCCAAAAATGTGAATACGCCAAAACAAAGTTGATCAAGTGTGAAGGTCGCGGT 300 Query 415 TGGGGACTAGTGGCTCTTGAAGAGATAAAGGCGGGGCAATTTATAATGGAGTACTGTGGT 474 ||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||| Sbjct 301 TGGGGACTAGTGGCTCTTGAAGACATAAAGGCGGGACAGTTTATAATTGAGTACTGTGGC 360 Query 475 GAAGTAATATCATGGAAAGAAGCAAAGAAG-AGGGCTCAAACTTATGAAACTCATGGTGT 533 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 361 GAAGTAATATCATGGAAAGAAGCAAAG-CGTAGGGCTCAAACTTATGAAACTCATGGTGT 419 Query 534 CAAGGATGCATACATTATATCTCTCAATGCATCTGAGGCTATTGATGCCACTAAGAAGGG 593 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 420 CAAGGATGCATACATTATATCTCTCAATGCGTCTGAGGCTATTGATGCCACTAAGAAGGG 479 Query 594 AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AAGCCTTGCTAGGTTTATAAATCATTCATGTAGACCAAATTGTGAGACGAGGAAGTGGAA 539 Query 654 TGTACTGGGAGAAGTTAGGGTTGGGATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA 713 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 540 TGTACTGGGAGAAGTTAGGGTTGGAATCTTTGCAAAAGAGAGCATCTCTCCCCGGACCGA 599 Query 714 ATTGGCTTACGACTATAATTTTGAATGGTACGGTGGTGCCAAAGTGCGTTGTCTCTGTGG 773 |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 600 ATTGGCCTACGACTATAATTTTGAATGGTATGGTGGTGCCAAAGTCCGTTGTCTCTGTGG 659 Query 774 TGCGGTTGCATGCTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGG-AGG-----A 827 ||| || ||||| ||||||||||||||||||||||||||||||||||||| | | | Sbjct 660 TGCAGTCGCATGTTCTGGATTTCTTGGAGCCAAGTCTCGTGGCTTTCAGGCAAGTCCTTA 719 Query 828 --T-A-CAT---A-T-G----TA--T--G---GG-AGGATGGTGACGATCGGTATTCAGT 866 | | ||| | | | || | | || |||||||||| |||||||||||||| Sbjct 720 CATTATCATCCTAATAGAGGATACATATGTATGGGAGGATGGTGATGATCGGTATTCAGT 779 Query 867 TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCTTCTAAGAA 926 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 780 TGATAAAATTCCAGTCTATGATTCTGCAGAGGACGAGCTTACATCTGAGCCCTCTAAGAA 839 Query 927 TGGCGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA 986 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 TGACGAGTCCAACACAAATGAAGAGAAAGAGAAAGATATCTCAACAGAGAACCATTTGGA 899 Query 987 GTCTACTGCTCTGAATATTCAACAGCAATCAGATTCAACTCCAACTCCTATGGAGGAAGA 1046 |||||||||||||| | |||| ||||||||||||||| | | | |||||||||||| Sbjct 900 GTCTACTGCTCTGACTGTTCA---GCAATCAGATTCAAC---A-C-C-TATGGAGGAAGA 950 Query 1047 TGTCGTCACGGAGACTGTTAAAACCGAAACATCTGAAGACATGAAGCTGCTCTCACAAAA 1106 ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 951 TGTTGTCACGGAGACTGTTAAAACCGAAACAGCTGAAGACATGAAGCTGCTCTCACAAAA 1010 Query 1107 TTCACAAGAAGATTCATCGCCAAAGACTGCAATTGTATCACGGGTTCACGGTAACATTTC 1166 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1011 TTCACAAGAAGATTCATCGCCGAAGACTGCAATTGTATCACGGGTTCGCGGTAACATTTA 1070 Query 1167 CAAGATCAAGTCCGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGAAAAAC 1226 ||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1071 CAAAATTAAGTCTGAATCTCTTCCGAAGAAAAGAGGCAGGCCGTTTTCAGGCGGGAAAAC 1130 Query 1227 AAAGAATGTCGCTCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA 1286 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1131 AAAGAATGTCGCCCAGAAGCATGTTGACATAGCGAATGTGGTTCAGCTACTAGCAACCAA 1190 Query 1287 AGAAGCTCAAGATGAAGTTCTCAAATACGAGG 1318 |||||||||||||||||||||||||||||||| Sbjct 1191 AGAAGCTCAAGATGAAGTTCTCAAATACGAGG 1222 Score = 481 bits (260), Expect = 9e-135 Identities = 272/278 (98%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 1316 AGGAGGTGAAGAAGGAAGCAGCAGTACGACTCTCGTCATTGTACGACGAGATAAGGCCGG 1375 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1301 AGGAGGTGAAGAAGGAGGCAGCAGTACGACTCTCGTCATTGTACGATGAGATAAGGCCAG 1360 Query 1376 CGATTGAGGAGCATGAAAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT 1435 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1361 CGATTGAGGAGCATGAGAGAGATAGCCAAGACAGTGTAGCAACAAGTGTGGCGGAGAAAT 1420 Query 1436 GGATACAAGCAAGCTGTAATAAACTCAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA 1495 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1421 GGATACAAGCAAGCTGTAATAAACTAAAGGCAGAGTTTGATCTTTACTCTAGTGTAATAA 1480 Query 1496 AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAAGCAG 1555 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1481 AGAACATCGCTTCCACTCCCATCAAACCACAAGACACAAAGACCAAAGTCGCGGAGGCAG 1540 Query 1556 GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA 1593 |||||||||||||||||||||||||||||||||||||| Sbjct 1541 GAAACGAAGACCATATTAAACTCTTGGAAGCCAAATGA 1578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65705672625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5