BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76730.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476834 jgi|Araly1|476834|fgenesh2_kg.2__1964__AT1G76730.1 1757 0.0
> Ahg476834 jgi|Araly1|476834|fgenesh2_kg.2__1964__AT1G76730.1
Length=1175
Score = 1757 bits (951), Expect = 0.0
Identities = 1090/1158 (94%), Gaps = 5/1158 (0%)
Strand=Plus/Plus
Query 66 GTTCGTGGATCTACCAATGATAAGATTATCACCTGGATTTGCAATCAATCCTCGTTTTCG 125
||||||||||||| | |||||| |||||||||||||||||||||||||| || |||||||
Sbjct 19 GTTCGTGGATCTAACGATGATACGATTATCACCTGGATTTGCAATCAATTCTTGTTTTCG 78
Query 126 ATCCGATTCCTTTGTCAATTCCCAGAAACCGCCTTTTCTCTCCGTC-CAAATCGGGTCAC 184
||| || |||| ||||||||||||||| || ||| |||||||| | |||||||||||||
Sbjct 79 TTCCAATACCTTCGTCAATTCCCAGAAATCGACTTCTCTCTCCG-CTCAAATCGGGTCAC 137
Query 185 AGCGGAGGAATCTCTCTAGAATCGGATCGGAGAACGGCGACGGCGTCGCTTTCGATGCTG 244
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 138 GGCGGAGGAATTTCTCTAGAATCGGATCGGAGAGCGGCGACGGCGTCGCTTTCGATGCTG 197
Query 245 TAGCTTATGAGGCTGATCGGTTGAGCCTCGACGCGGCGGCGATGGAGGATATGGCGGAGA 304
| | |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 198 TGGTTTATGAATCTGAGAGGTTGAGCCTCGATGCGGCGGCGATGGAGGATATGGCGGAGA 257
Query 305 CTGCAAAGAAGGAACTAGAATCGGATCCAGATAGTGACCCGAAAGCGTGGAAATGGGTTA 364
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 258 CTGCGAAGAAGGAACTAGAATCGGATCCAGATAATGACCCGAAAGCGTGGAAATGGGTCA 317
Query 365 TCCGAAAGAAGATGTGGGATCTCATGGAAGCTCGGAACTACGCTATGAGCCCTAGACCTG 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 318 TCCGAAAGAAGATGTGGGATCTCATGGAAGCTCGGAACTACGCAATGAGCCCTAGACCTG 377
Query 425 TTCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCTGCTGCAAGAAAATTAGCCGAGC 484
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 378 TTCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCTGCTGCACGAAAATTAGCCGAGC 437
Query 485 TTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCTCAAAAGCAAA 544
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 438 TTGATGCTTTTCGTAAGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCGCAAAAGCAAA 497
Query 545 TCAGGTTTCTTACACTTTCTGGTGAAAAGAAGCTGTTGACTCCTCAACCGAGGCTAAGAA 604
|||||||||||||||||||||| || |||| ||||||||| |||||||| ||||||||||
Sbjct 498 TCAGGTTTCTTACACTTTCTGGAGACAAGAGGCTGTTGACCCCTCAACCTAGGCTAAGAA 557
Query 605 CAGGATTCTTCTCTGTACTAGAATCTGATTTGTTGAAACCCGAAACGATCATGGAGGCTT 664
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 558 CAGGATTTTTCTCAGTACTAGAATCTGATTTGTTGAAACCCGAAACCATCATGGAGGCTT 617
Query 665 GCACTTCTGTAGGAGTAGCCAAATATGGAAGAGCGATTGGCCTTGATGAGAAAATCAAAG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GCACTTCTGTAGGAGTAGCCAAATATGGAAGAGCGATTGGCCTTGATGAGAAAATCAAAG 677
Query 725 TGGATCTCATTGTCATTGGCTCTGTTGCGGTTAACCCACAAACGGGTGCTCGATTAGGGA 784
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 678 TTGATCTCATCGTCATTGGCTCTGTTGCGGTTAACCCACAAACGGGTGCTAGATTAGGGA 737
Query 785 AAGGAGAGGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 AAGGAGAGGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATG 797
Query 845 ATTCCACACCCGTTGTTACAACTGTACATGATTGTCAGCTTGTAGATGATATACCTCTCG 904
|||||||||| |||||||| || ||||||||||||||||| ||||| |||||||| || |
Sbjct 798 ATTCCACACCTGTTGTTACCACCGTACATGATTGTCAGCTCGTAGACGATATACCCCTAG 857
Query 905 AGAAACTGGCGATTCACGATGTTCCTGTGGATATCATATGCACTCCTACTCGAGTCATTT 964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 858 AGAAACTGGCGATTCACGATGTTCCTGTGGATATCATATGCACTCCTACTCGAGTCATCT 917
Query 965 TCACAAACACACCAATACCAAAACCACAAGGAATTTATTGGGACAAACTGTCGCCGGAGA 1024
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 918 TCACAAATACACCAATACCAAAACCACAAGGAATTTATTGGGACAAACTGTCACCGGAGA 977
Query 1025 AGCTACGACAGATTCGAATACTAAGAGAGCTAAAGAATCGACTGGAAAAGAAGACTGGCC 1084
||||| |||||||||| |||||||||||||||||||| || |||||||||| |||||||
Sbjct 978 AGCTAGGACAGATTCGGATACTAAGAGAGCTAAAGAAGAGATTGGAAAAGAATACTGGCC 1037
Query 1085 GTAAACTTCCGACTGGACCATCTGAGAAATTACCTCCTACGGCTGAGCGAAAACGCCGGT 1144
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1038 GTAAACTTCCGACTGGACCATCTGAGAAATTACCTCCTACTGCTGAGCGCAAACGCCGGT 1097
Query 1145 AACTTAACCGCCTGTTTTTTACCGGTTTGTTTTCGGTTACTGTATTATACGAGAA-AACA 1203
|||| ||||||||| |||||||||||||||||||||||||||| |||||||| || || |
Sbjct 1098 AACTAAACCGCCTGGTTTTTACCGGTTTGTTTTCGGTTACTGTTTTATACGATAATAAAA 1157
Query 1204 -AAA-GATATGTATATTA 1219
||| |||||||||||||
Sbjct 1158 CAAATGATATGTATATTA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5