BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76740.1
Length=4679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927069 jgi|Araly1|927069|scaffold_202630.1 1397 0.0
> Ahg927069 jgi|Araly1|927069|scaffold_202630.1
Length=3846
Score = 1397 bits (756), Expect = 0.0
Identities = 1207/1409 (86%), Gaps = 94/1409 (7%)
Strand=Plus/Plus
Query 3225 ATTGCAAGTTGACTGTGGCATTTTCACAACTCCCGAGAAACATTTACTACTTGAAACAGA 3284
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2518 ATTTCAAGTTGACTGTGGCATTTTCACAACTCCCGAGAAACATTTACTTCTGGAAACAGA 2577
Query 3285 TGAAGGGGTAAAAGGAGACAATATAACCGCCAAGTCACATGTTTTGTCTGATGTTCTCGC 3344
|||||||||||||| |||||||||||| || ||||| |||||| || ||||||||||||
Sbjct 2578 TGAAGGGGTAAAAGAAGACAATATAACTGCTAAGTCTCATGTTGTGAATGATGTTCTCGC 2637
Query 3345 TGCTGATGTGCCCCATTCTCTTATGGGAGACTCTGAGCCAGATGAAGCTGAAAAAACCT- 3403
||||| ||||||||| |||||||||||||| | ||||| ||||||||||| ||||| |
Sbjct 2638 TGCTGCTGTGCCCCAATCTCTTATGGGAGATTGTGAGCTAGATGAAGCTG-AAAAA--TA 2694
Query 3404 CCGTAGAGATCAAGGATGTGGAATTGTTGGGTGAATCTAACTCTTCCACTAATCCAGAGA 3463
| | ||| ||||||||||||||| ||||||||||||||||| |||||||| | |||||||
Sbjct 2695 CAG-AGAAATCAAGGATGTGGAAATGTTGGGTGAATCTAACACTTCCACTCACCCAGAGA 2753
Query 3464 GCCCCACACTGTTTGGAAACTCCGAACTAGATGAATCAAGAGATTCTTCAGCAGCCACGT 3523
| | | | ||||||||||||||| |||||||||| ||| ||||| |||||||||||| |
Sbjct 2754 GACAAATAATGTTTGGAAACTCCGTACTAGATGAAACAAAAGATTATTCAGCAGCCACTT 2813
Query 3524 GCGAAGAGGCTTTTGTTAC-CACTTCTCCAGAGAAAGAACTTTTAATTAACCCTGGAAAG 3582
|||||| |||||||||| | ||||||| |||||| | |||||||| ||||| || |||
Sbjct 2814 GCGAAGTGGCTTTTGTT-CTCACTTCTGCAGAGAGACAACTTTTAGTTAACTCT--AAA- 2869
Query 3583 CAAGAACAAAAGGAGGTGG-ACGAAAATGTGGTTCAGGAAAGTCACGTTG-CAGCTCCAG 3640
| | || | | | ||| | | || | ||| | || | || ||| | |
Sbjct 2870 CCA-TAC---A-GTGATGGAAAG-CAA-GAACAAAAGG-AGGT--GGATGACAG-T-GTG 2917
Query 3641 ATTTCAGAGGAAACACCATTGTTGACTCAAGCGGTGGTATCGCATCCAAAGTTTCTTACA 3700
||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2918 -GTTCAG-GAAAACACCATTGTTGACTCAAGCGGTAGTATCGCATCCAAAGTTTCTTACA 2975
Query 3701 ACCATGAGCTTAATGCGGGGCAAGAAACTGCATGTGCAGAGTTAA-TGTCAAAAGGTTCT 3759
||||||||| | | || ||| || ||| || || || | ||| |
Sbjct 2976 ACCATGAGC-T--T-----------AA-TGC-TGGGCA-AG-AAACTG-C---AGG---T 3010
Query 3760 CAGGCAGAGGATGTTGTAGGTCTTGATGCTACACAAGGGACATCAAAGAAAAGAAGAGGG 3819
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||| |
Sbjct 3011 ---GCAGAGGATGTTGTAGGTCTAGATGCTACACAAGGAACATCAAAGAAAAGCAGAGAG 3067
Query 3820 CATTCTCCACATGCTGACTCAGTAAATCTTTTTGATTCTAACATTGAGGAGGTAGATACA 3879
|||||| | || | | | | |||| | || |||||||| ||| |||
Sbjct 3068 CATTCT-C-CA--C--A-T--G---------TTGA--C--AC--TGAGGAGGCAGAGACA 3103
Query 3880 ATCATGGAAGCAGAAAGAAATATTTCCTTTAGCTCCTATGTTGCGGTACCAGCCGAGGGT 3939
|||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||| |||
Sbjct 3104 ATCATGGAAGCAGAAAAAAATATTTCCTCTAGCTCCTTTGTTGCGTTACCAGCCGAAGGT 3163
Query 3940 ---AACTCCGAGACAATTGGCGAAATTTCCAGCTACCTTGAAGTTGCTGGAACCTGTTCC 3996
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 3164 AACAACTCCGAGACAATTGGTGAAATTTCCAGCTACCTTGAAGTCGCTGGAACCTGTTCT 3223
Query 3997 ATGGTGTTTGAT-GAATCTGGAT-CTTCCACAGACATTCAGAACCAAATAAATGATGCGC 4054
||||||| | | |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 3224 ATGGTGTCAG-TAGAATCTGG-TCCTTCCACAGACATTCAGAACCAAATAAATGATGCGT 3281
Query 4055 TGAAGGAATGGGCAATAACAGACAAAAATGAAGCAGATGAGCTCATAGAAGCAATTGTAA 4114
|| |||||||||||||||||||||| ||||||| ||||||| || ||||||||| ||||
Sbjct 3282 TGGAGGAATGGGCAATAACAGACAATAATGAAGTAGATGAGGTCGTAGAAGCAAAGGTAA 3341
Query 4115 CTA-AGAACATTCAAAAAGACTTCGAAGGAAATCTCCTTCTGAACTCCTCAGGTGGTGGC 4173
| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 3342 C-AGAGAACATTCAAAAAGGCTTCGAAGGAAATCTCCTTTTGAACTCCTCAGGTGGTGGC 3400
Query 4174 TCTAATGTCTCTGGAGAAACAAGCATCTTAGCTGGAACGGCGGATGAAGATGAAGCAGCT 4233
||||||||||||||||| ||| ||||||||| || ||||| |||||||||||||||||||
Sbjct 3401 TCTAATGTCTCTGGAGAGACATGCATCTTAGGTGAAACGGAGGATGAAGATGAAGCAGCT 3460
Query 4234 GGTCCAATTGCTATTGCC-TTCGTTAAAGCTATGTCTCTGACTCCTGATGAATTGACTGT 4292
| |||||||||||||||| || | |||||||| || |||||||||||||||||||||||
Sbjct 3461 GTTCCAATTGCTATTGCCGTT-GAGAAAGCTATCTCCCTGACTCCTGATGAATTGACTGT 3519
Query 4293 TAAGAATCACATGAATGAAAAAGCTGCAGATGAGGAAATGATCACGAGAGAAACTACTCC 4352
| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3520 TCAGAATCACATTAATGAAAAAGCTGCAGATGAGGAAATGATCACGAGAGAATCTACTCC 3579
Query 4353 AATTCCTGAAGAAACCATCAATGAGTCTTCTGAGAACAGGAAGGAGTA-TTCAAGCATTG 4411
|||||||||||||||||| |||||||| |||||||||||||||||||| || || |||||
Sbjct 3580 AATTCCTGAAGAAACCATGAATGAGTCCTCTGAGAACAGGAAGGAGTATTTGAA-CATTG 3638
Query 4412 ATGAATCAGCTACGTTATCCGAGATGCAAGTAAGAAGAGAACCAACCTTGATTTTCAGAA 4471
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3639 ATGAATCAGCTACGTTATCCGAGAGGCAAGTAAGAAGAGAACCAACCTTGATTTTCAGAA 3698
Query 4472 CACAAGTGAAGCCTACGAAGCATGACATGAAAGAGAATGCACCAAACTCAAAAATTGTGC 4531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3699 CACAAGTGAAGCCTACGAAGCATGACATGAAAGAGAATGCACCAAACTCAAAGATTGTGC 3758
Query 4532 ATAATCTTAACGTAACAGCTCCAAGAACATCAAAGAGACAGCCTCTCCAAGACTTGAACA 4591
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 3759 ATAATCTTAACGTAACAGCTCCAAGAACTTCAAAGAGACCGCCTCTCCAAGACTTGAGCA 3818
Query 4592 AGAACTAGA-TGACGGAATTAGCATATCT 4619
||||||||| |||| || || ||||||||
Sbjct 3819 AGAACTAGAGTGACTGATTT-GCATATCT 3846
Score = 876 bits (474), Expect = 0.0
Identities = 779/919 (85%), Gaps = 50/919 (5%)
Strand=Plus/Plus
Query 898 AAA-GTTCCTAGGCGTTCGAAACG-TCTTGCGAACGATGTAAATGTGCT-ACTGGATAAG 954
||| |||||| ||||||| ||||| |||| ||||| | |||||||| | ||||||||
Sbjct 1030 AAACGTTCCTCGGCGTTCAAAACGAGGTTGC-AACGACATTAATGTGCTGA-TGGATAAG 1087
Query 955 AGACCCGTTAAGGCTGTGAAACCTGATTATC-TGAAAGTCAAAAAGGCTCCAAAACAGTC 1013
| ||| ||||||||||||| | |||| | | || ||| ||||||||||||||||| ||
Sbjct 1088 CGGCCCATTAAGGCTGTGAAGCGTGATGACCTTG-GAGTAAAAAAGGCTCCAAAACACTC 1146
Query 1014 TAGGCGACTTG-AGAAGAGTCTCAGTGAACTCCTAATAGATGGCCAAGCTCAAAAGGGTG 1072
||||| || || | |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1147 TAGGCAACGTGTA-AAGAGTCTCAGTGAACGCCTAGTAGATGGCCAAGCTCAAAAGGGTG 1205
Query 1073 ATAAACAGC----GA-A-CTTTTGGAAATGGTCGTGAGGGTAAAAAGCTTCTACGAAGTT 1126
||||||| | || | |||||||||||| ||||||||||||||||||||| | || ||
Sbjct 1206 ATAAACAACCAAAGAGAACTTTTGGAAATGATCGTGAGGGTAAAAAGCTTCTCCAAACTT 1265
Query 1127 CGAAACACACTGCATCAAATAATATGTTGGGTCAAGCACTGAGTAATTCACTGAAACGTT 1186
|||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 1266 CGAAGCACACTGCATCAGATAAAATGTTGGGTCAAGCACTGAGTGATTCACTGAAAAGTT 1325
Query 1187 GTTCAGTTATTGACGGTGAACGAGCTGGAGTCTCTGTTGGTGATGTGAAGAAGTCAAATG 1246
|||||||||||||| | ||||||| |||||| | | | | ||||||||||||||||||
Sbjct 1326 GTTCAGTTATTGACTGCGAACGAGATGGAGT-T--G--G-TAATGTGAAGAAGTCAAATG 1379
Query 1247 TGAATAATGAAATGCAGATCCGTGTTAGAGTTACTAGGAACTCTTCGAGGCATCATTCAT 1306
||||| ||||||||||| |||||||||||||| | |||| ||||| ||||||||||||||
Sbjct 1380 TGAATGATGAAATGCAGGTCCGTGTTAGAGTTTCCAGGAGCTCTTTGAGGCATCATTCAT 1439
Query 1307 TTAAGGCTCCAATAGAGTTTGAAAGGAATCTTATTGAAAAGAAGTCGGATGAAACT-TT- 1364
|||||| |||||||||| ||||||||||||| ||||| ||||| | ||||||||| ||
Sbjct 1440 TTAAGGTTCCAATAGAGGTTGAAAGGAATCTGATTGATGAGAAGACAGATGAAACTCTTG 1499
Query 1365 --T-----GTCAAATCATCTAAAAGAGGTACTAGGAGGATGAAGCGGGGCAGATCAGCAG 1417
| ||||||||||||||||||| |||||||| || |||||||| ||||||||||
Sbjct 1500 ACTCTCTTGTCAAATCATCTAAAAGAGTTACTAGGATGACGAAGCGGGATAGATCAGCAG 1559
Query 1418 AGCCAGGGAAGGACATAGA-A----A-C---TCAGAGCAATCTAACGTCaaaaaaaCTTT 1468
|||||||||||| |||||| | | | |||||||||||||||| |||||||| ||
Sbjct 1560 AGCCAGGGAAGGGCATAGAGACTGCATCAACTCAGAGCAATCTAACGCCAAAAAAAGGTT 1619
Query 1469 TGAATGAGTATACTCAGTTTGAGCAAGAAGAAGCATGTGACGCTAATGTGGAAGT-TAGA 1527
|| ||||||| | ||||||||| |||||||||| | ||| |||||||||||| | | ||
Sbjct 1620 TGGATGAGTACATTCAGTTTGACCAAGAAGAAGGAGGTGGTGCTAATGTGGAA-TCTCGA 1678
Query 1528 GGCTCCTCCAAGAAGGCAAAGACGATGAATCAAGAATGCGTTAAGGATATACCACAAGTA 1587
||||| ||||||||| ||||||| | |||||||||||| ||||||||||| ||||| | |
Sbjct 1679 GGCTCTTCCAAGAAGTCAAAGACAAGGAATCAAGAATGTGTTAAGGATATGCCACACGGA 1738
Query 1588 ATGACTGAGAACTCACCTTCTT-CATCCGAAACCATAGCTGCGGAATCTGTTATGATTG- 1645
|||| |||||||||||||| || | || ||||||| |||||| ||||||||| |||| |
Sbjct 1739 ATGATTGAGAACTCACCTTTTTTC-TCAGAAACCAAAGCTGCAGAATCTGTTGTGAT-GA 1796
Query 1646 -T--TGAGAATGTTTTGGATTCTTCACCGGAAAAATCAGTTGATAGTTCTCAAAGAACAA 1702
| ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 1797 CTACTGAGAATGTTTTGGATTCTACTCTGGAAAAATCAGTTGATAGTTCTCAAAGAACAA 1856
Query 1703 ACACTCAAGAGTTGAATTCGGAAGTTATGGAAGGAAA-ACATGAAGAGAAACTTGAGGGA 1761
||| ||||||||||||||| ||| ||||||||||||| | |||||||||||||||| ||
Sbjct 1857 ACATTCAAGAGTTGAATTCTGAACTTATGGAAGGAAATAG-TGAAGAGAAACTTGAGCGA 1915
Query 1762 GACACAGTTTTGATGGTTG 1780
|| ||||||| ||||||||
Sbjct 1916 GATACAGTTTCGATGGTTG 1934
Score = 521 bits (282), Expect = 1e-146
Identities = 448/523 (86%), Gaps = 32/523 (6%)
Strand=Plus/Plus
Query 1 ATGAATTTTCATGGAATGAAGAGGAAGGATCTACAAGCTCTATGCAAAAAGAATGGAATC 60
||| |||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 26 ATGGATTTTCATGGAATGAAGAGGAATGATCTACAAGCTTTATGCAAAAAGCATGGAATC 85
Query 61 CCAGCAAATTTGAAGAACATTGAGATGGCTACTAGACTCGCTTCTGTTCTCCAGAAGGAA 120
||||||||||||||||||| ||||||||||| ||| |||| ||||||||| | | | |||
Sbjct 86 CCAGCAAATTTGAAGAACACTGAGATGGCTAATAGGCTCGTTTCTGTTCT-C-G-A-GAA 141
Query 121 ACTGAAGGAACTTTAACGGATACGATAAGTTTGTCTGAGGATTCTGTTGATGTTCTTGAG 180
| | | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 142 A--G-A--AACTTTAACGGATACGATAAGTTTGTCTGAGGATTCTGTTGAGGTTCTTGAG 196
Query 181 GATGATGTAGCTGTTAAGAAAGTAAGATTCAGTCCTGAGAATGAAGTATTTGAATTCACT 240
|||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 197 GATGATATAGTTGTTAAGAGAGTAAGATTCAGTCCTGAGAATGAAGTTTTTGAATTCACT 256
Query 241 CGGTCTCTCAAGAGATGTCAGC-G--GAA-GT----ATG-TTAGCAAAAGG-A-----AA 285
|| ||| ||||||||||||||| | ||| || | | |||||||| || | ||
Sbjct 257 CGATCTGTCAAGAGATGTCAGCGGAAGAATGTGAGAACGCTTAGCAAAGGGAATGTTCAA 316
Query 286 G---TTCAAGAAAGTGGAATAGAGCTAAGGCGGTCAAAGCGAAGTGTTGCTAAAGGG--- 339
| ||||||||||||||||||||||||||||||| | ||||| ||| ||||| |||
Sbjct 317 GATCTTCAAGAAAGTGGAATAGAGCTAAGGCGGTCTACGCGAATTGTGGCTAAGGGGAAT 376
Query 340 AAAGCAATAGCTGGATCTAGTGAAAACGAGTCAAACACAAGAAGAGGTAACCGGTCTGAT 399
||| || |||||||||||| || ||||||||||| | ||||||||||| ||| ||||
Sbjct 377 AAAACAGTAGCTGGATCTAATGTAAACGAGTCAACCGCAAGAAGAGGTCGTTGGTTTGAT 436
Query 400 GTTAC-AAAGGCTATCGAGGTCCCAAGGCGGTCGAAACGAAGTGGCTCTACCGGTAGTAG 458
||||| ||||| | | |||||||||||| || |||||||| ||| |||| |||| |||
Sbjct 437 GTTACAAAAGG-TCTTAAGGTCCCAAGGCCGTTGAAACGAATTGGATCTAGTGGTACTAG 495
Query 459 TCAAGAAGACTGTAAAGTAACGGAGTTGATGGCTTTGGAACAG 501
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TCAAGAAGACTGTAAAGTAACGGAGTTGATGGCTTTGGAACAG 538
Score = 237 bits (128), Expect = 6e-61
Identities = 187/214 (87%), Gaps = 10/214 (5%)
Strand=Plus/Plus
Query 699 GGATCAGAGAAGGTCAATAAGGCTTAAAGCTAGAGCTGCAAACCAATCAATGGGAGGTGA 758
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 766 GGATCAGAGAAGGTCAATAAGGCTTAAAGCTAGAGCTGCAAACCCATCTATGGAAGGTGA 825
Query 759 GTCATCCGATGGTAGACCCTTATGCTCTGCTAAGGAAACTAAAGAAGAAATAAAGA-T-- 815
|||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||||| |
Sbjct 826 GTCATCCGATGGTAGACCTTTATGTTATGCTAGGGAAAGTAAAGAAGAAATAAAGACTAC 885
Query 816 TAAGCAGTCAAAAAGATCTACGGTGGTCAGTAGTCAAAAAG---AGCTTGTTGAGAGA-A 871
||||||||||||||||||||||||||| | ||||| | ||| |||||||| | | | |
Sbjct 886 TAAGCAGTCAAAAAGATCTACGGTGGTTAATAGTCGAGAAGGTGAGCTTGTTAA-ATATA 944
Query 872 AAGCAAAGGAGCCTTT-AGTAGATAGCAAAGTTC 904
|||||||||||||||| | ||||| | || ||||
Sbjct 945 AAGCAAAGGAGCCTTTGA-TAGATTGTAAGGTTC 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 177043829596
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5