BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76750.1
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476835 jgi|Araly1|476835|fgenesh2_kg.2__1965__AT1G76750.1 983 0.0
> Ahg476835 jgi|Araly1|476835|fgenesh2_kg.2__1965__AT1G76750.1
Length=679
Score = 983 bits (532), Expect = 0.0
Identities = 635/684 (93%), Gaps = 9/684 (1%)
Strand=Plus/Plus
Query 3 CACAAACAAATCAACCAAAGCAACTTCTACTCTTTCTTCTTTCGACCTTATCAATCTGTT 62
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACAAACAAATCAACCAGACCCACTTCTACTCTTTCTTCTTTCGACCTTATCAATCTGTT 60
Query 63 GAGAAATGGCTTCCAAATCTAGTTTCATGGCTACCTTCAACATTGTGACTCTCATGCTCA 122
||||||||||| |||| || ||||||||| ||||||||||| ||||||| ||| | ||||
Sbjct 61 GAGAAATGGCTACCAAGTCCAGTTTCATGACTACCTTCAACGTTGTGACACTCGTACTCA 120
Query 123 TGGTGG---CTTCCTCCACAGTGACAGCTCGCCCTCTCATGAAACCATCCATGGGGACGT 179
|||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 121 TGGTGGTTTCTTCTTCCACTGTGACAGCTCGCCCTCTCATGAAACCGTCCATGGGCTCGT 180
Query 180 CTTCTCCTACCACAAGCCTTGTGTACAGGCTCAAGCTTGATGAAGATACAGGGTACTGCT 239
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 181 CTTCTCCTACCTCAAGCCTTGTGTACAGGCTCAGGCTTGATGAAGATACAGGTTACTGCT 240
Query 240 GGGACTCACTGATGCAGCTCCAACACTGTTCTGGAGAGCTGATCTTGTTCTTCCTCAACG 299
|||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 241 GGGACTCACTCATGCAGCTCCAACACTGCTCCGGAGAGCTCATCTTGTTCTTCCTCAACG 300
Query 300 GTGAGACTTACATTGGCCCTGGGTGTTGCAGTGCTATAAGAACCATTGGACGCAAGTGTT 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 GTGAGACTTACATTGGCCCTGGGTGTTGTAGTGCTATAAGAACCATTGGACGCAAGTGTT 360
Query 360 GGCCTACTATGATTGGTGTTCTTGGTTTTACTGCTCAAGAAGGTGATATGCTCCAAGGTT 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 GGCCTACTATGATTGGTGTTCTTGGTTTTACTGCTCAAGAAGGTGACATGCTCCAAGGTT 420
Query 420 ACTGTGATGGCAATGACTCTGACAACAATGGTGAAGACCATGCTCTTGCCTCCTCAACAC 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 421 ACTGTGATGGCAATGACTCTGACAACAATGGTGAGGACCATGCTCTTGCCTCCTCACCAC 480
Query 480 TGCCTCTCTCCGTGAATTTCAAGACTACCGTTGTTAGATCTTCTGCTTCTCCTTCTAACC 539
|||||||||||||| |||||||| ||| ||||||||||||||| ||||| | ||||||
Sbjct 481 TGCCTCTCTCCGTGGATTTCAAGCCTATGGTTGTTAGATCTTCTTCTTCT--T-CTAACC 537
Query 540 CTTGAGTCTTAGTATTCATCTTTACACTCCTGCTATGTTTTCTTTTGCTAAGAG-AATTT 598
||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 538 CTTGAATCTTAGTATTCAGGTTTACACTCCTGCTATGTTTTCTTTTGCTAAGAGGAATTT 597
Query 599 TAATCTTTATGTAACTGGTGACGAATGCTTGAAAAATAGCGTCTCTGTTATTACTTTTGA 658
| ||||||||||||||| || |||||||| ||||||||| |||||||||||||||| ||
Sbjct 598 -AGTCTTTATGTAACTGGAGAGGAATGCTTTAAAAATAGCTTCTCTGTTATTACTTT-GA 655
Query 659 GAATAAAAGATCATCATTACTCAC 682
||||||||||||||||||||||||
Sbjct 656 GAATAAAAGATCATCATTACTCAC 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25046756469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5