BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76760.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476836 jgi|Araly1|476836|fgenesh2_kg.2__1966__AT1G76760.1 929 0.0
Ahg923888 jgi|Araly1|923888|scaffold_105169.1 219 4e-56
Ahg476835 jgi|Araly1|476835|fgenesh2_kg.2__1965__AT1G76750.1 62.1 6e-09
> Ahg476836 jgi|Araly1|476836|fgenesh2_kg.2__1966__AT1G76760.1
Length=726
Score = 929 bits (503), Expect = 0.0
Identities = 562/590 (95%), Gaps = 6/590 (1%)
Strand=Plus/Plus
Query 231 TTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATCTTTATCTTCAACGACT 290
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 141 TTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTCTTTATCTTCAACGACT 200
Query 291 CGATGCACTCCTCGACGTATTGAAGCCAAGAAGCAGACATTTGACTCATTTGAGGATCTG 350
|||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 201 CGATGCACTCCTAGACTTATTGAAGCCAAGAAGCAGACATTTGACTCCTTTGAGGATCTG 260
Query 351 CTTGTGAACTCTGATAAACCAGTTCTAGTTGACTATTATGCAACCTGGTGTGGTCCTTGC 410
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 261 CTTGTGAACTCTGATAAGCCAGTTCTGGTTGACTATTATGCAACCTGGTGTGGTCCTTGC 320
Query 411 CAGTTCATGGTTCCAATACTCAATGAAGTGAGTGAAACCCTGAAAGACAAGATACAGGTG 470
|||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 321 CAGTTCATGGTTCCTATACTCAATGAAGTGAGTGCAACCCTGAAAGACAAGATCCAGGTG 380
Query 471 GTGAAGATTGATACCGAAAAATACCCCAGTATTGCTAATAAATACAAGATTGAGGCACTT 530
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 381 GTGAAGATCGATACCGAAAAATACCCGAGTATTGCCAATAAATACAAGATTGAGGCACTT 440
Query 531 CCTACTTTCATCCTATTCAAAGATGGGGAACCTTGTGATCGCTTTGAGGGTGCTTTGACG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CCTACTTTCATCCTATTCAAAGATGGGGAACCTTGTGATCGCTTTGAGGGTGCTTTGACG 500
Query 591 GCCAAACAACTCATTCAACGAATTGAGGATTCTCTAAAAGTGAAGCCATAGTT--GGATC 648
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 501 GCCAAACAACTCATCCAACGAATTGAGGATTCTCTAAAAGTGAAGCCATAGTTATGGATC 560
Query 649 ATGAACTCTTTTTTAATTATTTGTATGTTTTTCAACTGTCCCTGACCTATTCAGGACTTA 708
||||||||||||||||||||| || |||||||| ||||||||||| | | ||||| ||||
Sbjct 561 ATGAACTCTTTTTTAATTATTGGTGTGTTTTTCCACTGTCCCTGAGCGAATCAGGGCTTA 620
Query 709 GTGATAGCGATGTTTTTCGGTTGATTTAACTTGGAGAATTTGAGAAGAAGAAGATTATGT 768
| ||||| | | |||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 621 GCGATAG-G-T-TTTT-CGGTTGATTTAACTTGGAGAATTTGAGAAGAAGAAGGTTATGT 676
Query 769 TTGCCAGATTTGTAAAACCTTGTTGTGAGTAATGATGATCTTTTATTCTC 818
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TTGCCAGATTTGTAAAACCTTGTTGTGAGTAATGATGATCTTTTATTCTC 726
> Ahg923888 jgi|Araly1|923888|scaffold_105169.1
Length=259
Score = 219 bits (118), Expect = 4e-56
Identities = 134/141 (95%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 156 CCGTCGCTGAATTCGAAAGAATCG-TCAGGTGTTTCTGCTTTCGCTTCTCGTTCTATCTC 214
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 81 CCGTCGCTGAATTCGAAAGAATCGTTTA-GTGTTTCTGCTTTCGCTTCTCGTTCTATCTC 139
Query 215 GGCCGTCAAATTTCAGTTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATC 274
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 140 GGCCGTCAAATTTCAGTTTCCTGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTC 199
Query 275 TTTATCTTCAACGACTC-GAT 294
||||||||||||| ||| |||
Sbjct 200 TTTATCTTCAACGGCTCTGAT 220
> Ahg476835 jgi|Araly1|476835|fgenesh2_kg.2__1965__AT1G76750.1
Length=679
Score = 62.1 bits (33), Expect = 6e-09
Identities = 36/37 (97%), Gaps = 1/37 (3%)
Strand=Plus/Minus
Query 793 GTGAGTAATGATGATCTTTTATTCTCAAAAGTAATAA 829
||||||||||||||||||||||||||||| |||||||
Sbjct 679 GTGAGTAATGATGATCTTTTATTCTCAAA-GTAATAA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5