BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76760.1 Length=829 Score E Sequences producing significant alignments: (Bits) Value Ahg476836 jgi|Araly1|476836|fgenesh2_kg.2__1966__AT1G76760.1 929 0.0 Ahg923888 jgi|Araly1|923888|scaffold_105169.1 219 4e-56 Ahg476835 jgi|Araly1|476835|fgenesh2_kg.2__1965__AT1G76750.1 62.1 6e-09 > Ahg476836 jgi|Araly1|476836|fgenesh2_kg.2__1966__AT1G76760.1 Length=726 Score = 929 bits (503), Expect = 0.0 Identities = 562/590 (95%), Gaps = 6/590 (1%) Strand=Plus/Plus Query 231 TTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATCTTTATCTTCAACGACT 290 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 141 TTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTCTTTATCTTCAACGACT 200 Query 291 CGATGCACTCCTCGACGTATTGAAGCCAAGAAGCAGACATTTGACTCATTTGAGGATCTG 350 |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 201 CGATGCACTCCTAGACTTATTGAAGCCAAGAAGCAGACATTTGACTCCTTTGAGGATCTG 260 Query 351 CTTGTGAACTCTGATAAACCAGTTCTAGTTGACTATTATGCAACCTGGTGTGGTCCTTGC 410 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 261 CTTGTGAACTCTGATAAGCCAGTTCTGGTTGACTATTATGCAACCTGGTGTGGTCCTTGC 320 Query 411 CAGTTCATGGTTCCAATACTCAATGAAGTGAGTGAAACCCTGAAAGACAAGATACAGGTG 470 |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 321 CAGTTCATGGTTCCTATACTCAATGAAGTGAGTGCAACCCTGAAAGACAAGATCCAGGTG 380 Query 471 GTGAAGATTGATACCGAAAAATACCCCAGTATTGCTAATAAATACAAGATTGAGGCACTT 530 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 381 GTGAAGATCGATACCGAAAAATACCCGAGTATTGCCAATAAATACAAGATTGAGGCACTT 440 Query 531 CCTACTTTCATCCTATTCAAAGATGGGGAACCTTGTGATCGCTTTGAGGGTGCTTTGACG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 CCTACTTTCATCCTATTCAAAGATGGGGAACCTTGTGATCGCTTTGAGGGTGCTTTGACG 500 Query 591 GCCAAACAACTCATTCAACGAATTGAGGATTCTCTAAAAGTGAAGCCATAGTT--GGATC 648 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 501 GCCAAACAACTCATCCAACGAATTGAGGATTCTCTAAAAGTGAAGCCATAGTTATGGATC 560 Query 649 ATGAACTCTTTTTTAATTATTTGTATGTTTTTCAACTGTCCCTGACCTATTCAGGACTTA 708 ||||||||||||||||||||| || |||||||| ||||||||||| | | ||||| |||| Sbjct 561 ATGAACTCTTTTTTAATTATTGGTGTGTTTTTCCACTGTCCCTGAGCGAATCAGGGCTTA 620 Query 709 GTGATAGCGATGTTTTTCGGTTGATTTAACTTGGAGAATTTGAGAAGAAGAAGATTATGT 768 | ||||| | | |||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 621 GCGATAG-G-T-TTTT-CGGTTGATTTAACTTGGAGAATTTGAGAAGAAGAAGGTTATGT 676 Query 769 TTGCCAGATTTGTAAAACCTTGTTGTGAGTAATGATGATCTTTTATTCTC 818 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 TTGCCAGATTTGTAAAACCTTGTTGTGAGTAATGATGATCTTTTATTCTC 726 > Ahg923888 jgi|Araly1|923888|scaffold_105169.1 Length=259 Score = 219 bits (118), Expect = 4e-56 Identities = 134/141 (95%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 156 CCGTCGCTGAATTCGAAAGAATCG-TCAGGTGTTTCTGCTTTCGCTTCTCGTTCTATCTC 214 |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 81 CCGTCGCTGAATTCGAAAGAATCGTTTA-GTGTTTCTGCTTTCGCTTCTCGTTCTATCTC 139 Query 215 GGCCGTCAAATTTCAGTTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATC 274 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 140 GGCCGTCAAATTTCAGTTTCCTGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTC 199 Query 275 TTTATCTTCAACGACTC-GAT 294 ||||||||||||| ||| ||| Sbjct 200 TTTATCTTCAACGGCTCTGAT 220 > Ahg476835 jgi|Araly1|476835|fgenesh2_kg.2__1965__AT1G76750.1 Length=679 Score = 62.1 bits (33), Expect = 6e-09 Identities = 36/37 (97%), Gaps = 1/37 (3%) Strand=Plus/Minus Query 793 GTGAGTAATGATGATCTTTTATTCTCAAAAGTAATAA 829 ||||||||||||||||||||||||||||| ||||||| Sbjct 679 GTGAGTAATGATGATCTTTTATTCTCAAA-GTAATAA 644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30650825268 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5