BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76770.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339849 jgi|Araly1|339849|fgenesh1_pg.C_scaffold_2001948 917 0.0
> Ahg339849 jgi|Araly1|339849|fgenesh1_pg.C_scaffold_2001948
Length=750
Score = 917 bits (496), Expect = 0.0
Identities = 683/765 (89%), Gaps = 45/765 (6%)
Strand=Plus/Plus
Query 1 ATGGAGCTTGAATTAGGTCTGAAGATCACTCGGACTAAAGACGATGTTTCTTCCTCTACA 60
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGCTTGAATTAGGTCTAAAGATCACTCGAACTAAAGACGATGTTTCTTCCTCTACA 60
Query 61 GATTTTCGGGTTGCCAGAGATTCTTTTGGTCATCGT-TCACTTTCTCGAGAAACCAACTC 119
|||||| ||||| |||| |||||||||||||| | | || ||||||||||||||||||||
Sbjct 61 GATTTTAGGGTTACCAGTGATTCTTTTGGTCAGC-TATCTCTTTCTCGAGAAACCAACTC 119
Query 120 TGT-TTTCTTCCTCATTCTTCATCTCAAAGGATTTAAGAAGGATGGTATCGATATCGAGA 178
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TGTGTTT-TTCCTCATTCTTCATCTCAAAGGATTTAAGAAGGAAGGTATCGATATCGAGA 178
Query 179 TAAACAAAGAAGGGAATCTGATTAAGATCAGCGGAAG-AAAACAGGTTGAAGAGATGGTT 237
|||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||
Sbjct 179 TAAACAAAGAAGGGAATCGGATTAAGATCAGCGGAAGCAAAA-AGGTAGAAGAGATGGTT 237
Query 238 TTGGTAAAGTGGGTGGAATGGAAAAAGGAAACAGAAATAAAGGAATTCAAAAAAGTGTTT 297
||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 238 TTGGTAAAGTGGGTGGAGTGGAAAAAGGCAACAGAAATCAAGGAATTCAAGAAAGTGTTT 297
Query 298 CGGATTCCAGATATTG-TAATTCTTGACAAGATCAAAGCGAGGTTTAATGAAGAAGATGG 356
||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGGATTCCAGAAATCGTTAA-TCTTGACAAGATCAAAGCGAGGTTTAATGAAGAAGATGG 356
Query 357 GACTTTAACTGTTACAATGCCTAAGAAAGTTAAGGGAATTACCGGTCTGAAGATCgagga 416
||||||||| |||||||||| ||||||||||||||| ||||||||| | |||||| ||||
Sbjct 357 GACTTTAACGGTTACAATGCGTAAGAAAGTTAAGGGGATTACCGGTTTAAAGATCAAGGA 416
Query 417 agaggacgaagaagaggagatgaaaga-gccgatagtagaagagaaaacagaggagaaaa 475
||| | || | || || | ||||| || | |||| ||||||||||||||||| ||||
Sbjct 417 AGA--A-GA-G--GA--AG-TAAAAGATGCAG-TAGTGGAAGAGAAAACAGAGGAAAAAA 466
Query 476 cagaaccagaagaagaaatcaaagaagagacaaaacctgaggaagaa-aa------c-g- 526
||||||||||||||||||||||||||||| ||||||||||||||||| || | |
Sbjct 467 CAGAACCAGAAGAAGAAATCAAAGAAGAGCCAAAACCTGAGGAAGAAGAAGAAGAACAGG 526
Query 527 aagaagcagaagagccacagagagaagaggaagaaga---g---g---------ttgttg 571
|||||||||||||| |||||||||||||||||||||| | | ||||||
Sbjct 527 AAGAAGCAGAAGAGGCACAGAGAGAAGAGGAAGAAGACAAGATTGGAGAAGAGGTTGTTG 586
Query 572 aggaaggaacaagagatcatgaggggaaa-aaagaagaagaaatcgaagataaaccaaga 630
|||||| |||||| |||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 587 AGGAAGAAACAAGGGATCATGAGGA-AAAGAAAGAAGAAGAAATTGAAGATAAACCAAGA 645
Query 631 aagaagagaagaaaaaagTTTCGTTTACCATGTTTTGCAGGATCCACTCTGCTTATGTCT 690
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 646 AAGAAGAGAAGAAAAAAGTTCCGTTTACCGTGTTTTGCAGGATCCACTCTGCTTATGTCT 705
Query 691 ATTATTGTTTTCATTATTCAACTGATTCAATCCAGAAATAAATGA 735
|||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 706 ATTATTGTTTTCATCATTCAATTGATTCAATCCAGAAAAAAATGA 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5