BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76790.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476838 jgi|Araly1|476838|fgenesh2_kg.2__1968__AT1G76790.1 2010 0.0
Ahg472352 jgi|Araly1|472352|fgenesh2_kg.1__2306__AT1G21130.1 619 1e-176
Ahg472349 jgi|Araly1|472349|fgenesh2_kg.1__2303__AT1G21110.1 569 1e-161
> Ahg476838 jgi|Araly1|476838|fgenesh2_kg.2__1968__AT1G76790.1
Length=1280
Score = 2010 bits (1088), Expect = 0.0
Identities = 1217/1280 (95%), Gaps = 6/1280 (0%)
Strand=Plus/Plus
Query 40 AAAAATGGGACACCTAATTCCTCAAACCGGAGATGAAGAGACCGAGCTTGGTTTAGCTGC 99
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2 AAAAATGGGACACCTAATTCCTCAAACCGGAGATGAAGAAACCGAGCTTGGTTTAGCGGC 61
Query 100 GGTTAGGCTAGCTAACTGTGCAGCCTTCCCAATGGTTTTCAAAGCTGCCATCGAGCTCGG 159
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 62 GGTTAGGCTAGCCAATTGTGCAGCCTTCCCTATGGTTTTCAAAGCTGCCATCGAGCTCGG 121
Query 160 TGTCATCGACACTCTCTACTTAGCTGCTCGTGATGACGTCACCGGATCCAGTTCCTTCCT 219
|||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 122 TGTCATTGACACTCTCTACTTAGCTGCTCGTGCTGACGTCACCGGATCCGGTTCTTTCCT 181
Query 220 CACACCTTCTGAGATAGCTATTAGGCTCCCCACAAAACCTAGTAACCCTGAAGCACCAGC 279
|||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||
Sbjct 182 CACACCTTCTGAGATAGCTACTCGGCTTCCCACAAAACCTAGTAACCCTGAAGCACCGGC 241
Query 280 TCTGTTGGATCGTATTCTTCGTTTACTTGCTAGCTACTCCATGGTCAAGTGCCAAATTAT 339
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 242 TCTGTTGGACCGTATTCTTCGTTTACTCGCTAGCTACTCCATGGTCAAGTGCCAAGTTAT 301
Query 340 CGATGGTAACAGAGTCTACAAAGCAGAGCCGATTTGTCGATATTTCTTGAAAGATAATGT 399
|| || || || ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 302 AGAGGGCAAGAGGGTCTACAAAGCAGAGCCTATTTGTCGCTATTTCTTGAAAGATAATGT 361
Query 400 TGATGAAGAATTAGGAACACTTGCTTCTCAACTTATTGTCACTCTCGATACCGTCTTCCT 459
||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 362 TGATGAAGAGTTAGGTACACTTGCTTCTCAACTTATTGTCACACTCGATAGCGTCTTCCT 421
Query 460 CAATACATGGGGAGAATTAAAAAATGTGGTACTAGAAGGAGGAGTTGCATTTGGCCGTGC 519
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 422 CAATACATGGGGAGAATTAAAAAATGTGGTGCTAGAAGGAGGAGTTGCATTTGGCCGTGC 481
Query 520 CAATGGTGGTTTGAAACTCTTTGACTATATTAGCAAAGATGAGAGATTAAGCAAACTCTT 579
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 482 CAATGGTGGTCTGAAACTCTTTGACTATATAAGCAAAGATGAGAGATTAAGCAAACTCTT 541
Query 580 TAACCGGACCGGATTCTCTGTCGCGGTTTTGAAAAAGATCCTACAAGTTTATAGTGGTTT 639
||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct 542 TAACCGGACCGGATTCTCTGTCGGGGTTTTGAAAAAGATTCTACAAGTTTATAGAGGTTT 601
Query 640 CGAAGGAGTTAATGTGTTGGTTGATGTAGGAGGTGGAGTTGGTGACACACTTGGTTTTGT 699
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 602 CGAAGGAGTTAATGTGTTGGTTGATGTAGGAGGTGGAGTTGGAGACACACTTGGTTTTGT 661
Query 700 TACTTCAAAGTATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTAACACA 759
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 TACTTCCAAGTATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTGACACA 721
Query 760 AGCTCCTTCTTATCCTAATGTGGAACATGTAGCTGGAGACATGTTTGTTGATGTCCCAAA 819
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 722 AGCTCCTTCTTATCCTAATGTGGAACATGTGGCTGGAGACATGTTTGTTGATGTCCCAAA 781
Query 820 AGGTGATGCTATCCTCTTGAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAA 879
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGGTGATGCTATCATCTTAAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAA 841
Query 880 GATTCTCAAGAATTGTTGGAAAGCATTACCTGAGAATGGGAAAGTGATTGTCATGGAAGT 939
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 842 GATTCTCAAGAATTGTTGGAAAGCATTACCGGAGAATGGGAAAGTGATTGTCATGGAAGT 901
Query 940 AGTTACTCCAGATGAAGCAGATAATCGTGATGTGATATCCAACATTGCTTTTGATATGGA 999
||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 902 AGTTACTCCGGATGAAGCAGATAATCATGATGTGATATCCAACATTGCCTTTGATATGGA 961
Query 1000 TCTGTTGATGCTCACTCAATTATCTGGAGGTAAAGAGAGGTCGCGGGCCGAGTATGTAGC 1059
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 962 TCTGTTGATGCTCACACAATTATCTGGAGGAAAAGAGAGGTCGCGGGCCGAGTATGTAGC 1021
Query 1060 TATGGCTGCTAACTCGGGTTTTCCGCGTTGCAACTTTGTATGCAGTGCATATCATTTGTG 1119
||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1022 TATGGCTGCAAACTCGGGTTTTCCGCATTGCAACTTTGTATGCAGCGCATATCATTTGTG 1081
Query 1120 GGTCATTGAGTTAACGAAACAGGCTTAGAGTTGTAAGATTATGTTTCTTCCT-GTGTTCT 1178
|||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct 1082 GGTCATCGAGTTAACGAAACAGGCTTAAAGTTGTAAGATTATGTTTCC-CCTTGTGTTCT 1140
Query 1179 ATA-A-A--GAGTGTGAACCGTCTCATGGTAATAAAAGTTGTATGAATAAAATGATGATA 1234
||| | | ||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1141 ATATATAAAGAGCGTGAACCGTCTCATGGTAATAAAAGTTGTATGGATAAAAAGATGATA 1200
Query 1235 TTGTGGTTTGGTTAGAACTTGTAACATCTTATGTTTCTCTTGGAACGAATGATACTAATA 1294
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 TTGTGCCTTGGTTAGAACTTGTAACATCTTATTTTTCTCTTGGAACGAATGATACTAATA 1260
Query 1295 ACTATGACTATAAGTGACAT 1314
||||||||||||||||||||
Sbjct 1261 ACTATGACTATAAGTGACAT 1280
> Ahg472352 jgi|Araly1|472352|fgenesh2_kg.1__2306__AT1G21130.1
Length=1325
Score = 619 bits (335), Expect = 1e-176
Identities = 803/1023 (78%), Gaps = 56/1023 (5%)
Strand=Plus/Plus
Query 71 GATGAAGAGACCGAGCTT-GGTTTAGCT-GCGGTTAGGCTAGCTAACTG-TGCAGCCTTC 127
||||| || | |||| || ||||| | | || || || ||||| || || ||| |||||
Sbjct 166 GATGATGATAACGAG-TTGGGTTT-GATGGCCGTGAGACTAGCCAA-TGCTGCTGCCTTT 222
Query 128 CCAATGGTTTTCAAAGCTGCCATCGAGCTCGGTGTCATCGACACTCTCTACTTAGCTGCT 187
||||||||| ||||||| ||| |||||||||||||| | |||||||||||| | ||
Sbjct 223 CCAATGGTTCTCAAAGCCGCCCTCGAGCTCGGTGTCTTTGACACTCTCTACGCCGAAGC- 281
Query 188 CGTGATGACGTCACCGGATC-CAGTTCCTTCCTCACACCTTCTGAGATAGCTATTAGGCT 246
| | | || |||| || | | ||||| | ||||| || ||||||||||| | || ||
Sbjct 282 C-T-CT--CG-CACC-GA-CTC-GTTCC-T-CTCAC-CC-TCTGAGATAGCGAGTAAACT 329
Query 247 CCCCACAAAACCTAGTAACCCTGAAGCACCAGCTCTGTTGGATCGTATTCTTCGTTTACT 306
|| || | |||| |||||||||| || || | | ||||||| || || |||||| ||||
Sbjct 330 ACCAACTACACCTCGTAACCCTGAGGCTCCGGTTTTGTTGGACCGCATGCTTCGTCTACT 389
Query 307 TGCTAGCTACTCCATGGTCAA--GTGCCAAATTATC-GATGGTAA----CAGA--GTCTA 357
|||||||| || ||||||| ||| || | || || || || ||| |||||
Sbjct 390 CGCTAGCTATTCTGTGGTCAAGTGTGGTAAGGTCTCAGAAGGAAAGGGTGAGAGGGTCTA 449
Query 358 CAAAGCAGAGCCGATTTGTC-GATAT-TTCTTGAAAGATAATGTTGATGAAGA-ATTAGG 414
|| ||| ||||| ||||| | | | | |||||||| ||||| | | |||| ||| ||
Sbjct 450 CAGAGCCGAGCCAATTTG-CAGGT-TCTTCTTGAAGGATAA-CAT--TCAAGATATT-GG 503
Query 415 AACACTTGCTTCTCAACTTATTGTCACTCTCGATACCGTCTTCCTCAATACATGGGGAGA 474
| | |||||||||||| | ||||||| | |||||| |||||||||||||| |||| | |
Sbjct 504 ATCCCTTGCTTCTCAAGTCATTGTCAATTTCGATAGTGTCTTCCTCAATACTTGGGCACA 563
Query 475 ATTAAAAAATGTGGTACTAGAAGGAGGAGTTGCATTTGGCCGTGCCA-ATGGTGGTTTGA 533
||| ||| ||||||| ||||||||||| | |||||||||||| | || |||||| | |||
Sbjct 564 ATTGAAAGATGTGGTGCTAGAAGGAGGTGATGCATTTGGCCGCG-CACATGGTGATATGA 622
Query 534 AACTCTTTGACTATATTAGCAAAGATGAGAGATTAAGCAAACTCTTTAACCGGACCGGAT 593
|||||||||||||||| | | |||||||||||| ||||| |||||||||| ||||| |
Sbjct 623 AACTCTTTGACTATATGGGTACAGATGAGAGATTCAGCAAGCTCTTTAACCAAACCGG-T 681
Query 594 TCT-CTGTCGCGGTTTTGAA-AAAGATCCTACAAGTTTA-TAGTGGTTTCGAAGGA-GTT 649
| | | | |||||| |||| || | | || | ||||| | |||||| || || ||
Sbjct 682 TTTACCATTGCGGTTGTGAAGAAGGCT-CTTGAGGTTTACCA-AGGTTTC-AAAGATGTG 738
Query 650 AATGTGTTGGTTGATGTAGGAGGTGGAGTTGGTGACACACTTGGTTTTGTTACTTCAAAG 709
||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| |||
Sbjct 739 AATGTGTTGGTTGATGTAGGAGGTGGAGTTGGTAACACCCTTGGTGTTGTTACTTCTAAG 798
Query 710 TATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTAACACAAGCTCCTTCT 769
||||| || |||||||||||||||||||||||||||||||| || ||||||| || |||
Sbjct 799 TATCCCAATATTAAGGGTATCAATTTTGATCTAACTTGTGCCTTGGCACAAGCACCCTCT 858
Query 770 TATCCTAATGTGGAACATGTAGCTGGAGACATGTTTGTTGATGTCCCAAAAGGTGATGCT 829
||||| |||||| ||||| || ||||| ||||| || |||||||||| || ||||||
Sbjct 859 TATCCCGGTGTGGAGCATGTTGCCGGAGATATGTTCGTAGATGTCCCAACCGGAGATGCT 918
Query 830 ATCCTCTTGAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAAGATTCTCAAG 889
|| |||||||||||||||||||||| ||||| |||||||| |||| |||||||| |||
Sbjct 919 ATGATCTTGAAACGTATACTTCATGATTGGACCGATGAAGATTGTGTCAAGATTCTTAAG 978
Query 890 AATTGTTGGAAAGCATTACCTGAGAATGGGAAAGTGATTGTCATGGAAGTAGTTACTCCA 949
|||||||||||| || |||| || ||||| |||||| ||||||| ||| |||| |||||
Sbjct 979 AATTGTTGGAAATCACTACCAGAAAATGGTAAAGTGGTTGTCATAGAATTAGTCACTCCT 1038
Query 950 GATGAAGCAGATAATCGTGATGTGATATC-CAA-CATTGCTTTTGATATGGATC-TGTTG 1006
||||| ||||| ||| | || | | | | ||| |||||| ||||| ||||| | ||||
Sbjct 1039 GATGATGCAGAGAATGGAGACATCA-A-CGCAAACATTGCCTTTGACATGGA-CATGTTA 1095
Query 1007 ATGCTCACTCAAT-TATCTGGAGGTAAAGAGAGGTCGCGGGCCGAGTATGTAGCTATGGC 1065
||| | || |||| | ||||| || |||||||| || | || |||| || |||| ||||
Sbjct 1096 ATGTTTACCCAATGT-TCTGGTGGAAAAGAGAGATCAAGAGCTGAGTTTGAAGCTTTGGC 1154
Query 1066 TGC 1068
|||
Sbjct 1155 TGC 1157
> Ahg472349 jgi|Araly1|472349|fgenesh2_kg.1__2303__AT1G21110.1
Length=1264
Score = 569 bits (308), Expect = 1e-161
Identities = 795/1024 (78%), Gaps = 58/1024 (6%)
Strand=Plus/Plus
Query 71 GATGAAGAGACCGAGCTT-GGTTTAGCT-GCGGTTAGGCTAGCTAACTG-TGCAGCCTTC 127
||||| || | |||| || ||||| | | || || ||||| || || || || |||||
Sbjct 72 GATGATGATAACGAG-TTGGGTTT-GATGGCCGTGAGGCTTGCCAA-TGCCGCCGCCTTT 128
Query 128 CCAATGGTTTTCAAAGCTGCCATCGAGCTCGGTGTCA-TCGACACTCTCTACTTAGCTGC 186
||||||||| |||||||| || | ||||||||||| | | |||||||||||| ||||
Sbjct 129 CCAATGGTTCTCAAAGCTTCCCTTGAGCTCGGTGT-ATTTGACACTCTCTAC---GCTG- 183
Query 187 TCGTGATGACGTCACCGGATC-CAGTTCCTTCCTCACACCTTCTGAGATAGCTATTAGGC 245
| | || |||| || | | ||||||| |||| || ||||||||||| | || ||
Sbjct 184 AAG-CCTCTCG-CACC-GA-CTC-GTTCCTT--TCAC-CC-TCTGAGATAGCGAGTAAGC 234
Query 246 TCCCCACAAAACCTAGTAACCCTGAAGCACCAGCTCTGTTGGATCGTATTCTTCGTTTAC 305
| || || | ||| ||||||||| || || | ||||||||| || || |||||| |||
Sbjct 235 TACCAACTACACCCCGTAACCCTGGGGCTCCGGTTCTGTTGGACCGCATGCTTCGTCTAC 294
Query 306 TTGCTAGCTACTCCATGGTCAA--GTGCCAAATTATC-GATGGTAA-C---AGA--GTCT 356
| |||||||| || |||||||| ||| || | || || || || | ||| ||||
Sbjct 295 TCGCTAGCTATTCTATGGTCAAGTGTGGTAAGGTCTCAGAAGGAAAGCGTGAGAGGGTCT 354
Query 357 ACAAAGCAGAGCCGATTTGTC-GATAT-TTCTTGAAAG-ATAATGTTGATGAAGA-ATTA 412
| | ||| ||||| ||||| | ||| | ||| || ||| |||| | | |||| |||
Sbjct 355 ATAGAGCGGAGCCAATTTG-CAGAT-TCTTCCTG-AAGAATAA-CAT--TCAAGATATT- 407
Query 413 GGAACACTTGCTTCTCAACTTATTGTCACTCTCGATACCGTCTTCCTCAATACATGGGGA 472
||| | |||||||||||| | ||||||| | |||| | ||||||||| ||||| |||| |
Sbjct 408 GGATCCCTTGCTTCTCAAGTCATTGTCAATTTCGACAGCGTCTTCCTTAATACCTGGGCA 467
Query 473 GAATTAAAAAATGTGGTACTAGAAGGAGGAGTTGCATTTGGCCGTGCCA-ATGGTGGTTT 531
|||| ||| ||||||| ||||||||||||| ||| ||||| |||| || ||||||| |
Sbjct 468 CAATTGAAAGATGTGGTGCTAGAAGGAGGAGATGCGTTTGGGCGTG-CACATGGTGGCAT 526
Query 532 GAAACTCTTTGACTATATTAGCAAAGATGAGAGATTAAGCAAACTCTTTAACCGGACCGG 591
|||||||||||| ||||| | | |||||||||||| ||||| |||||||||| ||||||
Sbjct 527 GAAACTCTTTGATTATATGGGTACAGATGAGAGATTCAGCAAGCTCTTTAACCAGACCGG 586
Query 592 ATTCT-CTGTCGCGGTTTTGAA-AAAGATCCTACAAGTTTA-TAGTGGTTTCGAAGGAGT 648
|| | | | |||||| |||| || | | || ||||||| | || ||| |||| ||
Sbjct 587 -TTTTACCATTGCGGTTGTGAAGAAGGCT-CTTGAAGTTTACCA-AGGCTTCAAAGGTGT 643
Query 649 TAATGTGTTGGTTGATGTAGGAGGTGGAGTTGGTGACACACTTGGTTTTGTTACTTCAAA 708
||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||| ||
Sbjct 644 GAATGTGTTGGTTGATGTGGGAGGTGGAGTTGGTAACACCCTTGGTGTTGTTACTTCTAA 703
Query 709 GTATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTAACACAAGCTCCTTC 768
|||||| | ||||||||||||||||||||||||||||| || || ||||||| || ||
Sbjct 704 GTATCCCAGTATTAAGGGTATCAATTTTGATCTAACTTGCGCCTTGGCACAAGCACCCTC 763
Query 769 TTATCCTAATGTGGAACATGTAGCTGGAGACATGTTTGTTGATGTCCCAAAAGGTGATGC 828
|||||| ||| |||||||| || ||||| ||||| || |||||||||| || |||||
Sbjct 764 TTATCCCGGTGTAGAACATGTTGCGGGAGATATGTTCGTAGATGTCCCAACCGGAGATGC 823
Query 829 TATCCTCTTGAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAAGATTCTCAA 888
||| |||||||||||||||||||||| ||||| || ||||| |||| |||||||| ||
Sbjct 824 TATGATCTTGAAACGTATACTTCATGATTGGACCGACGAAGATTGTGTGAAGATTCTTAA 883
Query 889 GAATTGTTGGAAAGCATTACCTGAGAATGGGAAAGTGATTGTCATGGAAGTAGTTACTCC 948
||||||||||||| || |||| || || || |||||| ||||||| ||| |||| |||||
Sbjct 884 GAATTGTTGGAAATCACTACCAGACAACGGTAAAGTGGTTGTCATAGAATTAGTCACTCC 943
Query 949 -AGATGAAGCAGATAATCGTGATGTGATATCCAA-CATTGCTTTTGATATGGATC-TGTT 1005
| |||| ||||| ||| | || | | || ||| |||||| ||||| ||||| | ||||
Sbjct 944 TA-ATGACGCAGAGAATGGAGACATCA-ATGCAAACATTGCCTTTGACATGGA-CATGTT 1000
Query 1006 GATGCTCACTCAAT-TATCTGGAGGTAAAGAGAGGTCGCGGGCCGAGTATGTAGCTATGG 1064
||| | || |||| | || ||||| |||||||| || || || || | || | || |||
Sbjct 1001 AATGTTTACCCAATGT-TCCGGAGGAAAAGAGAGATCACGAGCTGAATTTGAATCTTTGG 1059
Query 1065 CTGC 1068
||||
Sbjct 1060 CTGC 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5