BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76800.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476839 jgi|Araly1|476839|fgenesh2_kg.2__1969__AT1G76800.1 1038 0.0
Ahg480044 jgi|Araly1|480044|fgenesh2_kg.3__2745__AT1G76800.1 977 0.0
> Ahg476839 jgi|Araly1|476839|fgenesh2_kg.2__1969__AT1G76800.1
Length=764
Score = 1038 bits (562), Expect = 0.0
Identities = 717/788 (91%), Gaps = 26/788 (3%)
Strand=Plus/Plus
Query 4 TATATCTcaacaaaacaaaaca-aacaaagaaacaaTGGATCAATCAGGTAGTAACACGA 62
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1 TATATCTCAACAAAACAAAACATCATAAAGAAACAATGGATCAATTAGGTAGTAACACGA 60
Query 63 ACATGGACATAGAGAAGGAATCAACTACATTTGATTACTCCAAACGTTCCCAATGGCTAC 122
||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 61 ACATGGACATAGAGAAGGAGTCAACAACCTTCGATTACTCCAAACGTTCCCAATGGCTAC 120
Query 123 GTGCGGCCGTGCTCGGAGCCAACGATGGTCTAGTCTCCACCGCGTCGTTGATGATGGGAG 182
| || |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 121 GCGCCGCCGTGCTTGGAGCCAACGACGGTCTTGTCTCCACCGCATCGTTGATGATGGGAG 180
Query 183 TTGGAGCTGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGG 242
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGCGCCGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGG 240
Query 243 CAGGAGCTTGTAGTATGGCCATAGGAGAGTTCGTCTCAGTTTACTCTCAGTACGATATAG 302
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 241 CAGGAGCTTGTAGTATGGCCATCGGAGAGTTCGTCTCTGTTTACTCTCAGTACGATATAG 300
Query 303 AGGTGGCTCAGATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGA 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTGGCTCAAATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGA 360
Query 363 TGCAAGCCGCGGCTGCGTCTGCCCTTGCGTTTTCCGCAGGTGCGATTGTACCGCTTTTGG 422
| ||||| || ||||| || || ||||||||||| |||||||||||||| || |||||||
Sbjct 361 TACAAGCGGCTGCTGCATCCGCTCTTGCGTTTTCGGCAGGTGCGATTGTGCCACTTTTGG 420
Query 423 CTGCTGCTTTTGTGAAAGAGTAT-AAGATGAGGATCATTTCGGTTGTGGTGGCGGTTACG 481
| ||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct 421 CGGCTGCTTTTGTGAAAGAGTATAAAG-TTAGGATCATTGCGGTTGTGGTGGCGGTTACG 479
Query 482 GTAGCTCTTATGGTTTTCGGATGGTTAGGAGCAGCGCTAGGGAAGGCACCAGCGGTTAGG 541
|| || ||||||||||| || ||||||||||| || |||||||| |||||||||||||||
Sbjct 480 GTGGCGCTTATGGTTTTTGGGTGGTTAGGAGCGGCACTAGGGAAAGCACCAGCGGTTAGG 539
Query 542 TCATCGGCTAGGGTTTTGTTTGGAGGTTGGTTAGCTATGGCGGTTACGTTTGGCTTGACT 601
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 TCATCGGCTAGGGTTTTGTTTGGAGGGTGGTTAGCTATGGCGGTTACGTTTGGCTTGACT 599
Query 602 AAGCTTATTGGGTTATATGGATTGTGAAGACATCTTTTTATAAGATTGTAAGATAAGTGT 661
||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 600 AAGCTTATTGGGTTATATGGATTGTGAAGACATCTTTTTATAA-ATTCTA---TA----- 650
Query 662 TGCCGAATTCTGTAGTGGATTTCGGTTGGAAATACATTAAACTTAACAGTATGTTTACGG 721
| | | | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 651 --C----T---G--G---ATTTCGGTTGGAAATACATAAAACTTAACAGTATGTTTACGG 696
Query 722 TACGTGAATAAACTCTTTTACTTCAAATGATCTTCATGCAAACAAAGATTACTAAAATTA 781
|||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||||| ||
Sbjct 697 TACGTGAACAAACTCTTTTACTTCAAATGATCTTCATGCCAACAAAGGTTATTAAAACTA 756
Query 782 AGCGATTA 789
||||||||
Sbjct 757 AGCGATTA 764
> Ahg480044 jgi|Araly1|480044|fgenesh2_kg.3__2745__AT1G76800.1
Length=720
Score = 977 bits (529), Expect = 0.0
Identities = 676/743 (91%), Gaps = 26/743 (3%)
Strand=Plus/Plus
Query 4 TATATCTcaacaaaacaaaaca-aacaaagaaacaaTGGATCAATCAGGTAGTAACACGA 62
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 1 TATATCTCAACAAAACAAAACATCATAAAGAAACAATGGATCAATTAGGTAGTAACACGA 60
Query 63 ACATGGACATAGAGAAGGAATCAACTACATTTGATTACTCCAAACGTTCCCAATGGCTAC 122
||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||
Sbjct 61 ACATGGACATAGAGAAGGAGTCAACAACCTTCGATTACTCCAAACGTTCCCAATGGCTAC 120
Query 123 GTGCGGCCGTGCTCGGAGCCAACGATGGTCTAGTCTCCACCGCGTCGTTGATGATGGGAG 182
| || |||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 121 GCGCCGCCGTGCTTGGAGCCAACGACGGTCTTGTCTCCACCGCATCGTTGATGATGGGAG 180
Query 183 TTGGAGCTGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGG 242
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGCGCCGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGG 240
Query 243 CAGGAGCTTGTAGTATGGCCATAGGAGAGTTCGTCTCAGTTTACTCTCAGTACGATATAG 302
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 241 CAGGAGCTTGTAGTATGGCCATCGGAGAGTTCGTCTCTGTTTACTCTCAGTACGATATAG 300
Query 303 AGGTGGCTCAGATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGA 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTGGCTCAAATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGA 360
Query 363 TGCAAGCCGCGGCTGCGTCTGCCCTTGCGTTTTCCGCAGGTGCGATTGTACCGCTTTTGG 422
| ||||| || ||||| || || ||||||||||| |||||||||||||| || |||||||
Sbjct 361 TACAAGCGGCTGCTGCATCCGCTCTTGCGTTTTCGGCAGGTGCGATTGTGCCACTTTTGG 420
Query 423 CTGCTGCTTTTGTGAAAGAGTAT-AAGATGAGGATCATTTCGGTTGTGGTGGCGGTTACG 481
| ||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||
Sbjct 421 CGGCTGCTTTTGTGAAAGAGTATAAAG-TTAGGATCATTGCGGTTGTGGTGGCGGTTACG 479
Query 482 GTAGCTCTTATGGTTTTCGGATGGTTAGGAGCAGCGCTAGGGAAGGCACCAGCGGTTAGG 541
|| ||||||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 480 GTGGCTCTTATGGTTTCCGGGTGGTTAGGAGCGGCGCTAGGGAAAGCACCAGCGGTTAGG 539
Query 542 TCATCGGCTAGGGTTTTGTTTGGAGGTTGGTTAGCTATGGCGGTTACGTTTGGCTTGACT 601
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 TCATCGGCTAGGGTTTCGTTTGGAGGGTGGTTAGCTATGGCGGTTACGTTTGGCTTGACT 599
Query 602 AAGCTTATTGGGTTATATGGATTGTGAAGACATCTTTTTATAAGATTGTAAGATAAGTGT 661
||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 600 AAGCTTATTGGGTTATATGGATTGTGAAGACATCTTTTTATAA-ATTCTA---TA----- 650
Query 662 TGCCGAATTCTGTAGTGGATTTCGGTTGGAAATACATTAAACTTAACAGTATGTTTACGG 721
| | | | ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 651 --C----T---G--G---ATTTCGGTTGGAAATACCTAAAACTTAACAGTATGTTTACGG 696
Query 722 TACGTGAATAAACTCTTTTACTT 744
|||||||| ||||||||||||||
Sbjct 697 TACGTGAACAAACTCTTTTACTT 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5