BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76850.1
Length=3552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476843 jgi|Araly1|476843|fgenesh2_kg.2__1973__AT1G76850.1 5653 0.0
Ahg921086 jgi|Araly1|921086|scaffold_102367.1 2937 0.0
> Ahg476843 jgi|Araly1|476843|fgenesh2_kg.2__1973__AT1G76850.1
Length=3482
Score = 5653 bits (3061), Expect = 0.0
Identities = 3257/3353 (97%), Gaps = 7/3353 (0%)
Strand=Plus/Plus
Query 41 CGATCATCTGAATCGCCGAAACATGTCGAGCGATAGCAATGATCTTGACGAAGATGAGCT 100
|||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 24 CGATCATCTGAATCACCGAAACATGTCGAGCGATAGCAACGATCTAGACGAAGATGAGCT 83
Query 101 TCTTCAAATGGCGTTGAAAGAGCAGGCTAAGAGAGATCTCACCTATCAGAAACCTCCTTC 160
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 84 TCTTCAAATGGCCTTGAAAGAGCAGGCTCAGAGAGATCTCACCTATCAGAAACCTCCTTC 143
Query 161 ATCTTCTGCTCGTAAGCCTGTTGCCAATTTAGTGCAGCAGCCTCGACAGCAGAAGCCTGT 220
|| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 144 CTCCTCTGCTCGCAAACCTGTTGCCAATTTAGTGCAGCAGCCTCGACAGCAGAAGCCGGT 203
Query 221 GGCTGCGGCTGCCGCTCCGCCGAAGAAGTCTGCTG-CGGCGGTTAGGAAGCCTTCCATGG 279
|||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 204 GGCTGCTGCTGCCGCTCCGCCGAAGAAGTCTGC-GCCGGCGGTTAGGAAGCCTTCCATGG 262
Query 280 ATGAGGATGAGGAGTCGGAGGTGGAATTGCTTAGCATTTCGAGCGGGGATGATGATTTGG 339
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ATGAGGATGATGAGTCGGAGGTGGAATTGCTTAGCATTTCGAGCGGGGATGATGATTTGG 322
Query 340 AGAGGGAAAGGGAAATAGGTGGTTCTAGTGGTGGTGCGGGGAGAGGAAGAGGTAGCGATG 399
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 323 AGAGGGAAAGGGAAATAGGTGGTTCCAGTGGTGGTGCGGGGAGAGGAAGAGGTAGCGATG 382
Query 400 TACGAGAGAAGGGAAGAGCGAGGAAGGAAGATGATGGTGCTTGGGATGGAGGAGAGCCTG 459
| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 383 TTCGGGAGAAGGGAAGAGCGAGGAAGGAGGATGATGGTGCTTGGGATGGAGGGGAGCCTG 442
Query 460 ATTGTTGGAAACGGGTTAATGAAGCTGAGCTTGCTCGTAGGGTTCGTGATATGAGGGAAT 519
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 443 ATTGTTGGAAACGGGTTAATGAAGCTGAGCTCGCTCGTAGGGTTCGTGATATGAGGGAAT 502
Query 520 CGAGAACAGCACCCGTGGTTCAGAAAGTAGAAGGTAAAGCACCTGCACCTGGGAAGAAAG 579
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 503 CGAGAACAGCACCCGTGGTTCAGAAAGTAGAGGGTAAAGCACCTGCACCTGGCAAGAAAG 562
Query 580 TGGCTCTGACTAGTTTGCAGTCACTTCCTCGTGGAATGGAATGTATTGATCCACTAAAAT 639
||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 563 TGGCTCTGACTAGTTTGCAGTCACTCCCTCGTGGCATGGAATGCATTGATCCACTAAAAT 622
Query 640 TAGGGATCATAGACAATAAGACATTGAGATTAATCACTGAGTCGTCAGGCAGCCCATCAA 699
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 623 TAGGGATCATAGACAATAAGACACTGAGATTAATCACTGAGTCGTCAGGCAGCCCATCAA 682
Query 700 AAGCTGAGAAAGTGGATAATACTCTTCGCGAAAAATTGGTTTACTTCTCTGATCATTTCG 759
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 683 AAGCTGAGAAAGTGGATAATACTCTTCGGGAAAAATTGGTTTACTTCTCTGATCATTTCG 742
Query 760 ATCCGAAGCTGTTTCTTTCCCGTATTCACCAAGACACGACTGCAGCAGATTTGGAGGCTG 819
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 743 ATCCGAAGCTGTTTCTTTCTCGTATTCACCAAGACACGACTGCAGCAGATTTGGAGGCTG 802
Query 820 GTGCCCTTGGCTTGAAAAGTGACTTAAAGGGTCGGAATCTGCAAAGGAAACAATTGGTGA 879
||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 803 GTGCCCTTGGCCTCAAAAGTGACTTAAAGGGTCGGAATCTGCAACGGAAACAATTGGTAA 862
Query 880 AGGACAATTTTGACTGCTTCGTCTCATGTAAAACAACAATTGATGATATTGAGTCAAAAC 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 AGGACAATTTTGACTGCTTCGTCTCATGTAAAACAACAATTGATGATATTGAGTCAAAAC 922
Query 940 TGAAGCGGATTGAAGAAGACCCCGAAGGTTCAGGAACTACTCATTTGTTTAATTGTATGA 999
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 923 TTAAGCGGATTGAAGAAGACCCCGAAGGGTCAGGAACTACTCATTTGTTCAATTGTATGA 982
Query 1000 AAAGTGTGACATCGAGGGCCAATCTTGCATTTGAGCCACTTTTTGAGAGACAGGCTCAAG 1059
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 983 AAAGTGTGACATCAAGGGCCAATCTTGCATTTGAGCCCCTTTTTGAGAGACAGGCTCAAG 1042
Query 1060 CTGAGAAAATCAGGTCTGTCCAAGGAATGCTTCAGAGATTCCGGACACTGTTCAATTTAC 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1043 CTGAGAAAATCAGGTCTGTCCAAGGAATGCTTCAGAGATTCCGGACACTGTTCAACTTAC 1102
Query 1120 CCAGTATCATTCGTAGCAGTATTAGCAAGGGTGAATATGATTTGGCTGTTCGAGAATACA 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 CCAGTATCATTCGTAGCAGTATTAGCAAGGGTGAATATGATTTGGCTGTTCGAGAATACA 1162
Query 1180 AGAAGGCGAAATCTATTGCTCTACCTTCTCATGTTAATATACTCAAGCGTGTACTCGAGG 1239
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1163 AGAAGGCGAAATCTATTGCTCTCCCTTCTCATGTAAATATACTCAAGCGTGTACTCGAGG 1222
Query 1240 AGGTTGAGAAAGTTATGCTGGAATTTAAAGGCACACTATACAAGTCTATGGAAGATCCGA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 AGGTTGAGAAAGTTATGCTGGAATTTAAAGGCACACTATACAAGTCTATGGAAGATCCGA 1282
Query 1300 AAATAGACTTTACAAGTCTGGAAAACACTGTGAGGCTTTTGCTGGAGCTGGAACCCGAAT 1359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 AAATAGACTTTACAAGCCTGGAAAACACTGTGAGGCTTTTGCTGGAGCTGGAACCCGAAT 1342
Query 1360 CTGATCCTGTGTGGCATTATCTAAATGTTCAGAATCATAGAATCCACGGCTTGCTTGAGA 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 CTGATCCTGTGTGGCATTATCTAAATGTTCAGAATCATAGAATCCACGGCTTGCTTGAGA 1402
Query 1420 AATGTACATATGATCATGAAGCAAGGGTGGAAATTTTGCGTAACGACACTCATGAGAAAG 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 AATGTACATATGATCATGAAGCAAGGGTGGAAATTTTGCGTAACGACACTCATGAGAAAG 1462
Query 1480 CCATCTCAGATGCAAAGTGGCAACAAATTCAACAAAATGGCGTTTCATATTCAGATACCG 1539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1463 CCATCTCAGATGCGAAGTGGCAACAAATTCAACAAAATGGCGTTTCATATTCAGATA--G 1520
Query 1540 CCTCTTCTAATGAAAATAATGCAGTTCAAGTTGACCTACAATCAGTGGAATTCCCCAGCG 1599
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1521 C-TCTTCTAATGAAAATAATGCCGTTCAAGTTGACCTACAATCAGTGGAATTTCCCAGCG 1579
Query 1600 AAGAGATTGATATTTTGAAGGGAAGATACATCAAAAGATTGACTGCTGTGCTTGTGCATC 1659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 AAGAGATTGATACTTTGAAGGGAAGATACATCAAAAGATTGACTGCTGTGCTTGTGCATC 1639
Query 1660 ATATCCCTGTGTTTTGGAAAACAGCTATATCTATTTTCAGTGGAAAATTTGCCAAGTCCT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 ATATCCCTGTGTTTTGGAAAACAGCTATATCTATTTTCAGTGGAAAATTTGCCAAGTCCT 1699
Query 1720 CCCAAGTTACTGATACTTCAGCCAATAAAGCTGAGGAGAAGGTCACAGAGGCAAGATATT 1779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 CTCAAGTTACTGATACTTCAGCCAATAAAGCTGAGGAGAAGGTCACAGAGGCAAGATATT 1759
Query 1780 CAACTCATTCTTTGGAAGAAGTTGCTGGGATGATACGCAAGACTATTTCTGTCTATGAAG 1839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 CAACTCATTCTTTGGAAGAAGTTGCTGGGATGATACGCAAGACTATTTCTGTCTATGAAG 1819
Query 1840 CAAAGGTGAACAGCACATTTTGTGATTTTGATGAATCATGCATTCTCCGCCCATTTATGA 1899
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1820 CAAAGGTGAACAGCACATTTTGTGATTTTGACGAATCATGCATTCTCCGCCCATTTATGA 1879
Query 1900 GTGATGCCATTAACGAAGTATCAAAAGCATGCCAAGCTTTTGAAGCCAAAGAGTCAACGC 1959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 GTGATGCCATCAACGAAGTATCAAAAGCATGCCAAGCTTTTGAAGCCAAAGAGTCAACGC 1939
Query 1960 CCCACAGTGCTGTCGTTGCACTGAGAAAAATCCAGGCGGAAATCACTAAGATTTATATCC 2019
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1940 CCCACAGTGCTGTCGTTGCACTGAGAAAAGTCCAGGCGGAAATCACTAAGATTTATATCC 1999
Query 2020 AAAGGCTTTGCTCTTGGATGAGGGCCTCCACGGAAGGAATATCAAAAGAGGAGACGTGGA 2079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2000 AAAGGCTTTGCTCTTGGATGAGGGCATCCACGGAAGGAATATCAAAAGAGGAGACGTGGA 2059
Query 2080 TCCCGGTTTCTATTCTTGAAAGGAATAGATCTCCATATGCCATCTCTTACTTGCCTCTTG 2139
| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 TTTCGGTGTCTATTCTAGAAAGGAATAGATCTCCATATGCCATCTCTTACTTGCCTCTTG 2119
Query 2140 CATTCCGTTCAGTTATTGTCTCTGGCATGGAACAAGTCAATCTGATGATTCTGTCTGTCA 2199
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2120 CATTCCGTTCTGTTATTGTCTCTGGCATGGAACAAGTCAATCTGATGATTCTGTCTGTCA 2179
Query 2200 AAAGTGAAGCTGCCAAATCAGAAGATATGTTTGCCCAAATTGAAGAAATCATAATATCCG 2259
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2180 AAAGTGAAGCTGCCAAATCAGAAGATATGTTTGCCCAAATTGAGGAAATCGTAATATCTG 2239
Query 2260 TTAGACTGGCATTTTTGAACTGCTTTCTGGATTTTGCTGCGCACTTGGAGCAAATTGGTG 2319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 TTAGACTGGCATTTTTGAACTGCTTTCTGGATTTTGCTGCGCACTTGGAGCAAATTGGTG 2299
Query 2320 CTGATCTTTCCCAAAGCACCTCCAGACAAGATAATTGGAAAAACGGATATTCTGATGAGC 2379
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2300 CTGATCTTTCCCAAAGCACCTCAAGACAAGATAATTGGAAAAACGGATATTCTGATGATC 2359
Query 2380 ATCAGGAAGAACCATCAGCCAACACCTACGGAAGTGTAATTGATCCTCACAGGCGGTTGT 2439
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2360 ATCAGGAAGAACCATCAGCCAACACCTACGGAAGTGTTGTTGATCCTCACAGGCGGTTGT 2419
Query 2440 TGATGGTCTTAAGTAATATAGGTTACTGCAAAGATGAACTTGCTTCAGAGCTTTACAACA 2499
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2420 TGATGGTGTTAAGTAATATAGGTTATTGCAAAGATGAACTTGCTTCAGAGCTTTACAACA 2479
Query 2500 AGTTCAAATATACATGGTTACAGTCTAGAGACAAAAATGAAGACAGTAGTGATCTTCAAG 2559
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2480 AGTTCAAATATACATGGTTGCAGTCTAGAGACAAAAATGAAGACAGTAGCGATCTTCAAG 2539
Query 2560 ATCTAATAATGTCTTTCTCTGGACTCGGAGAGAAGGTCCTCGAGCATTACACTTTTGCTA 2619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2540 ATCTAATAATGTCTTTCTCTGGACTCGGAGAGAAGGTCCTCGAGCATTACACTTTTGCTA 2599
Query 2620 AGGCAAATTTGATCAGAACAGCGGCCACAAATTATTTGCTGGACTCTGGTATTCAATGGG 2679
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2600 AGGCAAATTTGATCAGAACAGCGGCCACAAATTATTTACTGGACTCTGGTATTCAGTGGG 2659
Query 2680 GATCAGCACCTCAAGTGAAAGGCATACGAGATGCTGCTGTTGAGCTGTTGCACACTCTTG 2739
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2660 GATCAGCACCTCAAGTGAAAGGCATACGAGATGCGGCTGTTGAGCTGTTGCACACTCTTG 2719
Query 2740 TAGCTGTCCATGCAGAGGTCTTTGCTGGTGCTAAACCCCTCCTGGACAAGATTCTTGGCG 2799
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2720 TAGCTGTCCATGCGGAGGTCTTTGCTGGTGCAAAACCCCTCCTGGACAAGATTCTTGGCG 2779
Query 2800 TGCTGATCGAAGGTCTAATCGACACTTTTCTGAGTGTTGTGGAAGAAAACAGATCAAGTG 2859
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2780 TGCTGATAGAAGGTCTAATCGACACTTTTCTGAGTCTTGTGGAAGAAAACAGATCAAGTG 2839
Query 2860 ACCTAAGATCAATTGATGCAAATGGTTTCTGCCAACTGATGTTTGAGCTTGAATATTTTG 2919
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2840 ACCTAAGATCAATTGATGCAAATGGTTTCTGCCAACTAATGTTTGAGCTTGAATATTTTG 2899
Query 2920 AAACAGTACTGTATTCATATTTTACAAGCGCTGCAACCGAGTCTCTTAAATCTCTACAAG 2979
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2900 AAACAGTACTGAATCCATATTTTACAAGCGCTGCAACCGAGTCTCTTAAATCTCTACAAG 2959
Query 2980 GAACCGTGTTGGAGATAGCTATAGAGAGCATCAGTGAAGCAGTCGAGACCCCAGGGCATA 3039
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2960 GAACCGTGTTGGAAATAGCTATAGAGAGCATCAGTGAAGCAGTTGAGACCCCAGGGCATA 3019
Query 3040 ATCGTAGACCAACTCGTGGCAGCGAAGACACAGTTTCAGATGACAAGCAATCTGTTTCAG 3099
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3020 ATCGTAGACCAACTCGTGGCAGTGAAGACACAGTTTCAGATGACAAGCAATCTGTTTCAG 3079
Query 3100 CAGATGACCTCCTCGCTCTAACGAAACAGTGTTCAAACGAATTGCTACAACAAGAGTTGG 3159
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3080 CAGATGACCTCCTCGCTCTAACGAAACAGTGTTCAAACGAATTGCTACAACCAGAGTTGG 3139
Query 3160 AGAGAACTCGTGTGAACACAGCATGCTTTGCAGAGTCAGCCCCATTAGAGTCAACGCCTC 3219
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3140 AGAGAACTCGTGTAAACACAGCATGCTTTGCAGAGTCAACACCATTAGAGTCAACGCCTC 3199
Query 3220 CATTACCCAAAGCTACCTACTCTTCCTTTAGAGGATCAATGGATTCTCCAAGCAGAAACT 3279
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3200 CATTACCCAAAGCAACCTACTCTTCCTTTAGAGGATCAATGGATTCTCCAAGCAGAAACT 3259
Query 3280 ACAGAGGCTCACAATCATCTGGTTCTCCCATTAATGCCCGACCCAGACGAAGATAATAAG 3339
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3260 ACAGAGGCTCACAATCATCTGGTTCTCCCATTAATGCCCGACCCAGAAGAAGATAAAAAG 3319
Query 3340 AGACCAACTTTGTTTATTTAATAATTTCT-TCTCCGTTTATTTGTACGTAAAT 3391
| |||||||||||||||||| |||||| ||||| ||||| |||||||||||
Sbjct 3320 ACACCAACTTTGTTTATTTAC-AATTTCGGTCTCCTTTTATATGTACGTAAAT 3371
> Ahg921086 jgi|Araly1|921086|scaffold_102367.1
Length=3299
Score = 2937 bits (1590), Expect = 0.0
Identities = 2765/3317 (83%), Gaps = 142/3317 (4%)
Strand=Plus/Plus
Query 87 GACGAAGATGAGCTTCTTCAAATGGCGTTGAAAGAGCAGGCTAAGAGAGATCTCACCTAT 146
|||||||||||||| ||||||||||||||||| ||||| || |||||||||| ||||||
Sbjct 37 GACGAAGATGAGCTACTTCAAATGGCGTTGAAGGAGCAATCTCAGAGAGATCTTACCTAT 96
Query 147 CAGAAACCTCCTTCATCTTCTGCTCGTAAGCCTGTTGCCAATTTAGTGCAGCAGCCTC-G 205
||||| |||||||| || | | |||||||| || ||||||||||||||||||| | |
Sbjct 97 CAGAAGCCTCCTTCCGCTAATTCCCGTAAGCCAGTCACCAATTTAGTGCAGCAGCCACGG 156
Query 206 ACAGCAGAAGCCTGTGGCTG-CGGCTGCCGCTCCGCCGAA--GAAGTCTGCTG-CGGCGG 261
| | |||||| | ||| | | ||| | |||||||||| || || | | | ||| |
Sbjct 157 AGA-CAGAAGAC---GGC-GACAGCT--C-CTCCGCCGAAGGGAGGT-T-C-GAAGGC-G 204
Query 262 T-TAGGAAGCCTTCCATGGATGAGGATGAGGAGTCGGAGGTGGAATTGCTTAGCATTTCG 320
| |||||||| || |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 205 TCAAGGAAGCCATCGATGGATGAGGATGATGAATCGGAGGTGGAATTGCTTAGCATTTCG 264
Query 321 AGCGGGGATGATGAT-TTGGAGAGGGAAAGGGAAATAGGTGGTTCTAGTGGTGGTGCGG- 378
||||||||||| ||| ||| | || ||| || || ||| || | ||| | ||||
Sbjct 265 AGCGGGGATGAGGATGACGGA-AATGATCGGGCAAGAGATGG-TC-A-CGGT-G-GCGGA 318
Query 379 GG-AGAGGAAGAGGTAGCG-A-T-GT-ACGAGAGAAGGGAAGAGCGAGGAAGGAAGATGA 433
|| |||||||||||| | | | | || | ||||| | ||||||||| |||||||||||||
Sbjct 319 GGTAGAGGAAGAGGT-G-GAAGTGGTAAGGAGAG-A-GGAAGAGCGCGGAAGGAAGATGA 374
Query 434 TGGTGCTTGGGATGGAG-GAGAGCCTGATTGTTGGAAACGGGTTAATGAAGCTGAGCTTG 492
| | ||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 375 TAGAGCTTGGGATGGAGTG-GAGCCAGATTGCTGGAAACGGGTTAATGAAGCTGAGCTTG 433
Query 493 CTCGTAGGGTTCGTGATATGAGGGAATCGAGAACAGCACC--C-GTGGTTCAGAAAGTAG 549
| || ||||||||||||||| |||| |||||||||||||| | ||| |||||| | |
Sbjct 434 CACGCAGGGTTCGTGATATGCGGGAGTCGAGAACAGCACCATCTGTGACTCAGAACCTTG 493
Query 550 A-AGGTAAAGCACCTGCACCTGGGAAGAAAGTGGCTCTGACTAGTTTGCAGTCACTT-CC 607
| ||| || | | ||| | ||| |||||||||| ||| || |||||||| ||| || ||
Sbjct 494 ATAGG-AAGGTATCTGGAGCTGACAAGAAAGTGGTTCTTACCAGTTTGCAATCA-TTCCC 551
Query 608 TCGTGGAATGGAATGTATTGATCCACTAAAATTAGGGATCATAGACAATAAGACATTGAG 667
|||||| |||||||| ||||||||||||||||| ||||| ||||| || |||||| ||||
Sbjct 552 TCGTGGCATGGAATGCATTGATCCACTAAAATTGGGGATAATAGATAACAAGACACTGAG 611
Query 668 ATTAATCACTGAGTCGTCAGGCAGCCCATCAAAAGCTGAGAAAGTGGATAATACTCTTCG 727
||||||||||||||| || | || | |||||||||||||||||||||||| | ||| |
Sbjct 612 ATTAATCACTGAGTCATCTGAAAGTCTTTCAAAAGCTGAGAAAGTGGATAATGCACTTAG 671
Query 728 CGAAAAATTGGTTTACTTCTCTGATCATTTCGATCCGAAGCTGTTTCTTTCCCGTATTCA 787
||||| ||||| ||| ||||||| ||||||||||| ||||| ||| |||| || |||||
Sbjct 672 GGAAAAGTTGGTGTACATCTCTGACCATTTCGATCCCAAGCTATTTATTTCTCGCATTCA 731
Query 788 CCAAGACACGACTGCAGCAGATTTGGAGGCTGGTGCCCTTGGCTTGAAAAGTGACTTAAA 847
|||||| || | ||||||||| ||||| | |||||||||| | ||||||||||||||||
Sbjct 732 CCAAGAGACAAGTGCAGCAGACTTGGAATCCGGTGCCCTTGCCCTGAAAAGTGACTTAAA 791
Query 848 GGGTCGGAATCTGCAAAGGAAACAATTGGTGAAGGACAATTTTGACTGCTTCGTCTCATG 907
||| || ||||| ||||||||||||||||| || || |||||||||||||| ||||| ||
Sbjct 792 GGGCCGTAATCTACAAAGGAAACAATTGGTTAAAGATAATTTTGACTGCTTTGTCTCGTG 851
Query 908 TAAAACAACAATTGATGATATTGAGTCAAAACTGAAGCGGATTGAAGAAGACCCCGAAGG 967
|||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 852 TAAAACAACAATTGATGATATTGAATCAAAACTGAAACGGATCGAAGACGACCCAGACGG 911
Query 968 TTCAGGAACTACTCATTTGTTTAATTGTATGAAAAGTGTGACATCGA-GGGCCAATCTTG 1026
|| ||||||||||||||||||||| ||||||| ||||||||||| | |||| |||| ||
Sbjct 912 ATCGGGAACTACTCATTTGTTTAATAGTATGAAGAGTGTGACATC-ACGGGCTAATCGTG 970
Query 1027 CATTTGAGCCACTTTTTGAGAGACAGGCTCAAGCTGAGAAAATCAGGTCTGTCCAAGGAA 1086
| |||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 971 CTTTTGAGCCACTTTTTGAGAGACAGGCCCAAGCTGAGAAGATCAGGTCTGTACAGGGAA 1030
Query 1087 TGCTTCAGAGATTCCGGACACTGTTCAATTTACCCAGTATCATTCGTAGCAGTATTAGCA 1146
|||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 1031 TGCTTCAGAGATTCCGTACACTCTTCAATTTACCCAGTATAATTCGTAGTAGTATTAGCA 1090
Query 1147 AGGGTGAATATGATTTGGCTGTTCGAGAATACAAGAAGGCGAAATCTATTGCTCTACCTT 1206
| || || ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1091 AAGGCGAGTATGATTTGGCTGTTCGGGAATACAAGAAGGCGAAGTCTATTGCTCTCCCTT 1150
Query 1207 CTCATGTTAATATACTCAAGCGTGTACTCGAGGAGGTTGAGAAAGTTATGCTGGAATTTA 1266
||||||| ||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||
Sbjct 1151 CTCATGTAAATTTACTCAAGCGCGTACTCGAGGAGGTTGAGAAAGTGATGCAGGAGTTTA 1210
Query 1267 AAGGCACACTATACAAG-TCTATGGAAGATCCGAAAATAGACTTTACAAGTCTGGAAAAC 1325
||||||| || ||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1211 AAGGCACCCTTTAC-AGATCTATGGAAGATCCGAAAATAGATTTTACGAGTCTGGAAAAC 1269
Query 1326 ACTGTGAGGCTTTTGCTGGAGCTGGAACCCGAATCTGATCCTGTGTGGCATTATC-TAAA 1384
|||||||||||||| ||||||||||| || ||||| |||||||| |||||||| | ||||
Sbjct 1270 ACTGTGAGGCTTTTACTGGAGCTGGAGCCTGAATCGGATCCTGTTTGGCATTA-CTTAAA 1328
Query 1385 TGTTCAGAATCATAGAATCCA-CGGCTTGCTTGAGAAA-TGTACATATGATCATGAAGCA 1442
||||||||||||||| ||||| ||| ||||||| ||| ||||||| |||||||||||||
Sbjct 1329 TGTTCAGAATCATAGGATCCATGGGC-TGCTTGA-AAAGTGTACATTTGATCATGAAGCA 1386
Query 1443 AGGGTGGAAATTTTGCGTAACGACA-CT-CATGAGAAAGC-CATCTCAGATGCAAAGTGG 1499
||| |||||| |||||| ||| || | ||||||| ||| | |||| || || ||||||
Sbjct 1387 AGGATGGAAAGTTTGCGCAAC--CAGGTGCATGAGAGAGCTC-TCTCTGACGCGAAGTGG 1443
Query 1500 CAACAAATTCAACAAAATGGCGTTTC-A-TATTCAGAT-ACCGCCTCTTCTAAT-GAAAA 1555
| |||||||||||||||||| | ||| | | ||||||| | | |||||| || ||| |
Sbjct 1444 CGACAAATTCAACAAAATGGTG-TTCAACT-TTCAGATGA-CATGTCTTCT-ATGGAAGA 1499
Query 1556 TAATGC-AGTTCAAGTTGACCTACAATCAGTGGAATTCCCCAGCGAAGAG--ATTGATAT 1612
|||| | |||||||||||||| || ||||| | | || | | |||||| | |||
Sbjct 1500 TAAT-CAAGTTCAAGTTGACCAACCATCAGAAG-AGTCAGC-GGGAAGAGAAAAGGATGC 1556
Query 1613 TTTGAAGGGAAGATACATCAAAAGATTGACTGCTGTGCTTGTGCATCATATCCCTGTGTT 1672
||||| ||||||||||||||||| |||||||||||| | || ||||| ||||| |||
Sbjct 1557 TTTGAGGGGAAGATACATCAAAATATTGACTGCTGTAATCGTATATCATCTCCCTACGTT 1616
Query 1673 TTGGAAAACAGCTATATCTATTTTCAGTGGAAAATTTGCCAAGTCCTCCCAAGTTACTGA 1732
||||||||||||| | ||| |||| | ||| |||||||||||||| |||||||||| |||
Sbjct 1617 TTGGAAAACAGCTCTTTCTGTTTTTACTGGGAAATTTGCCAAGTCTTCCCAAGTTAATGA 1676
Query 1733 TACTTCAGCCAATAAAGCTGAGGAGAAGGTC--ACAGAGGCAAGATATTCAACTCATTCT 1790
||||||||||| ||||||||||||||||| | | ||| || || ||||||| |||||||
Sbjct 1677 TACTTCAGCCAGTAAAGCTGAGGAGAAGG-CGGA-AGAAGCGAGGTATTCAAGTCATTCT 1734
Query 1791 TTGGAAGAAGTTGCTGGGATGATACGCAAGACTATTTCTGTCTATGAAGCAAAGGTG-AA 1849
||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||| ||
Sbjct 1735 TTGGAAGAAATTGCTGGGATGATACGCAATACCATTTCTGTTTATGAAGCAAAGGTGCAA 1794
Query 1850 CAGCACATTTT-GTGATTTTGATGAATCATGCATTCTCCGCCCATTTATGAGTGATGCCA 1908
||||| |||| ||||||||| ||||||| |||||||| ||||| |||||||||| |||
Sbjct 1795 -AGCAC-TTTTCATGATTTTGACGAATCATACATTCTCCACCCATATATGAGTGATACCA 1852
Query 1909 TTAACGAAGTATCAAAAGCATGCCAAGCTTTTGAAGCCAAAGAGTCAACGCCCCACAGTG 1968
| || ||||||||||||||||||||||||||||| |||||||||||| | ||||| ||||
Sbjct 1853 TCAAAGAAGTATCAAAAGCATGCCAAGCTTTTGAGGCCAAAGAGTCAGCTCCCCATAGTG 1912
Query 1969 CTGTCGTTGCACTGAGAAAAATCCAGGCGGAAATCACTAAGATTTATATCCAAAGGCTTT 2028
||||| | ||||| |||||| | ||| |||||||||||| || || ||||||||||| |
Sbjct 1913 CTGTCATGGCACTAAGAAAAGTTAAGGTGGAAATCACTAAAATATACATCCAAAGGCTCT 1972
Query 2029 GCTCTTGGATGAGGGCCTCCACGGAAGGAATATCAAAAGAGGAGACGTGGATCCCGGTTT 2088
||||||||||||| || || || |||| ||||||||| || |||||||||||||| ||||
Sbjct 1973 GCTCTTGGATGAGAGCGTCTACAGAAGAAATATCAAAGGAAGAGACGTGGATCCCAGTTT 2032
Query 2089 CTATTCTTGAAAGGAATAGATCTCCATATGCCATCTCTTACTTGCCTCTTGCATTCCGTT 2148
|||||||||||||||| |||||||||||| ||||||||||| |||| ||||| |||||||
Sbjct 2033 CTATTCTTGAAAGGAACAGATCTCCATATTCCATCTCTTACCTGCCCCTTGCGTTCCGTT 2092
Query 2149 CAGTTATTGTCTCTGGCATGGAACAAGTCAATCTGATGATTCTGTCTGTCAAAAG-TGAA 2207
|||||||||||||||| ||||||||| | ||| |||||||||| ||| | ||||| ||||
Sbjct 2093 CAGTTATTGTCTCTGGGATGGAACAAATTAATATGATGATTCTATCTTT-AAAAGGTGAA 2151
Query 2208 GCTGCCAAATCAGAAGATATGTTTGCCCAAATTGAAGAAATCATAATATCCGTTAGACTG 2267
||||| | ||| |||||||||||||| || |||||||||||| | ||||| ||||||||
Sbjct 2152 GCTGCTAGATCCGAAGATATGTTTGCACATATTGAAGAAATCCTGATATCTGTTAGACTT 2211
Query 2268 GCATTTTTGAACTGCTTTCTGGATTTTGCTGCGCACTTGGAGCAAATTGGTGCTGATCTT 2327
|| ||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||
Sbjct 2212 GCCTTTCTGAACTGCTTTCTGGATTTTGCTGCTCACCTGGAGCAAATTGGTGCTGACCTT 2271
Query 2328 TCCCAAAGCACCTCCA-GACAAGATAATTGGAAAAACGGATATTCTGATGAGCATCAGGA 2386
|| ||| ||||||| | | | ||| | |||| |||| ||||| || | || || |||||
Sbjct 2272 TCTCAACGCACCTCAAAG-CGAGAGAGTTGGCAAAATGGATACTCCAACGACCACCAGGA 2330
Query 2387 AGAACCATCAGCCAACACCTACGGAA-GTGTAATTGATCCTCACAGGCGGTTGTTGATGG 2445
||||| |||| ||| | | | ||| |||| ||||||||||||||| ||||||||||
Sbjct 2331 AGAACAATCAATCAATGC-TCCTGAAAGTGTTGTTGATCCTCACAGGCAGTTGTTGATGA 2389
Query 2446 TCTTAAGTAATATAGGTTACTGCAAAGATGAACTTGCTTCAGAGCTTTACAACAAGTTCA 2505
| |||||||||||||| ||||||||||| |||||||| || |||||||||||||||| ||
Sbjct 2390 TTTTAAGTAATATAGGCTACTGCAAAGACGAACTTGCCTCTGAGCTTTACAACAAGTACA 2449
Query 2506 AATATACATGGTTACAGTCTAGAGACAAAA-ATGAAGACAGT-AGTGATCTTCAAGATCT 2563
||||||| |||||||||||| | || ||| ||||||||| | || ||||||||||||||
Sbjct 2450 AATATACCTGGTTACAGTCTCG-GAGAAATGATGAAGACA-TCAGCGATCTTCAAGATCT 2507
Query 2564 AATAATGTCTTTCTCTGGACTCGGAGAGAAGGTCCTCGAGCATTACACTTTTGCTAAGGC 2623
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 2508 GATAATGTCTTTCTCTGGTCTTGGAGAGAAGGTCCTCGAACATTACACTTTTGCTAAGGC 2567
Query 2624 AAATTTGATCAGAACAGCGGCCACAAATTATTTGCTGGACTCTGGTATTCAATGGGGAT- 2682
||| |||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| |
Sbjct 2568 AAACTTGATCAGAACAGCTGCCACGAATTATCTGCTGGACTCTGGTATTCAGTGGGG-TG 2626
Query 2683 CAGCACCTCAAGTGAAAGGCATACGAGATGCTGCTGTTGAGCTGTTGCACACTCTTGTAG 2742
|||| |||| ||| |||||||| ||||||||||||||||||||||| |||||||| || |
Sbjct 2627 CAGCGCCTCCAGTAAAAGGCATTCGAGATGCTGCTGTTGAGCTGTTACACACTCTGGTTG 2686
Query 2743 CTGTCCATGCAGAGGTCTTTGCTGGTGCTAAACCCCTCCTGGACAAGATTCTTGGCG-TG 2801
|||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| ||| |
Sbjct 2687 CTGTCCATGCAGAGGTATTTGCGGGTGCCAAACCACTCCTGGACAAAATTCTCGGCACTT 2746
Query 2802 CTGATCGAAGGTCTAATCGACACTTTTCTGAGTGTTGTGGAAGAAAACAGATCA-AGTGA 2860
|| |||||||||| || || |||||||| ||| || |||||||||||||||| | ||
Sbjct 2747 -TGGTCGAAGGTCTGATTGATACTTTTCTCAGTCTTCTGGAAGAAAACAGATCTGAC-GA 2804
Query 2861 CCTAAGATCAATTGATGCAAATGGTTTCTGCCAACTGATGTTTGAGCTTGAATATTTTGA 2920
|||||| ||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 2805 CCTAAGCTCAATAGATGCAAATGGTTTCTGCCAATTGATGCTTGAGCTCGAATATTTTGA 2864
Query 2921 AAC-AGTACTGTATTCATATTTTACAAG-CGCTGCAACCGAGTCTCTTAAATCTCTACAA 2978
|| | ||||| | ||||||| || | || |||||||||||| || |||||||| |||
Sbjct 2865 GACTA-TACTGAACCCATATTTGACT-GTCGATGCAACCGAGTCCCTAAAATCTCTGCAA 2922
Query 2979 GGAACCGTGTTGGAGATAGCTATAGAGAGCATCAGTGA-AGCAGTCGAGACC--CC---- 3031
||| | ||||| |||| ||||| |||||| || ||||| | ||||||||| | ||
Sbjct 2923 GGAGCTGTGTTAGAGAAAGCTACAGAGAGTATAAGTGAGA-CAGTCGAGAACAACCTGGG 2981
Query 3032 AGGGCATAATCGTAGACCAACTCGTGGCAGCGAAGACACAGTTTCAGATGACAAGCAATC 3091
||||||| | || | |||||| |||||||| ||||| || ||||||||||||| |||||
Sbjct 2982 AGGGCATCAGCGGAAACCAACACGTGGCAGTGAAGATGCAATTTCAGATGACAAACAATC 3041
Query 3092 -T--GTTTCAGCAGATGACCTCCTCGCTCTAACGAAA-CAGTGTTCAAACGA-ATTGCTA 3146
| || ||| ||||||| || || ||||| | | | || || ||| || || |||
Sbjct 3042 ATCCGTATCACCAGATGATCTACTTGCTCTTGC-ACAGCAATGCACAAGCGGGAT-GCTT 3099
Query 3147 CAACAAGAGTTGGAGA-GAACTCGTGTGAACACAGCATGCTTT-GCAGAGTC-AGCCCCA 3203
||| ||| | |||| || | ||| ||||| ||||| ||| | ||| | | ||
Sbjct 3100 CAATTGGAGCTAGAGAAGACC-CGTTTGAACTGTGCATG-TTTCGTTGAGACCATTCCG- 3156
Query 3204 TTAGAGTC-AACGCCTCCATTACCCAAAGCTACCTACTCTTCCTTTAGAGGATCAA-TGG 3261
|| || || || | || | || | ||||| ||||||| | ||| ||| | ||
Sbjct 3157 TTGGA-TCCAATG--TC-AGTAGCTAAAGCGGCCTACTC--C----AGAACATCGACTG- 3205
Query 3262 ATTCTCCAAGCAGAAACTACAGAG-GCTCACAATCATCTGG-TTCTCCCATT-AATGCCC 3318
||||||||||||||||||| |||| | || |||||| ||| |||||| || || |||
Sbjct 3206 ATTCTCCAAGCAGAAACTATAGAGAG-TCGCAATCAG-TGGGTTCTCCGGTTCAA-GCCA 3262
Query 3319 GACCCAGACGAAGATAA 3335
|||||||||||||||||
Sbjct 3263 GACCCAGACGAAGATAA 3279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134152944825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5