BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76860.1

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927080 jgi|Araly1|927080|scaffold_202641.1                        580    3e-165
  Ahg472357 jgi|Araly1|472357|fgenesh2_kg.1__2311__AT1G21190.1         359    1e-98 


> Ahg927080 jgi|Araly1|927080|scaffold_202641.1
Length=338

 Score =  580 bits (314),  Expect = 3e-165
 Identities = 328/335 (98%), Gaps = 0/335 (0%)
 Strand=Plus/Plus

Query  97   GTATCTCTGTCTACACGATGTCCGGCGAGGAAGAAGCCACCGTGAGGGAGCCACTAGATC  156
            |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  4    GTATCTCTGTCTACACAATGTCCGGCGAGGAAGACGCCACCGTGAGGGAGCCACTAGATC  63

Query  157  TGATTAGGCTGAGTCTCGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAACTTC  216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  64   TGATTAGGCTGAGTCTCGACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAGCTTC  123

Query  217  GCGGCAAGCTTCACGCGTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAA  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  124  GCGGCAAGCTTCACGCGTTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAA  183

Query  277  CTATCACTACAGTAGAAATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGC  336
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  184  CTATCACAACAGTAGAAATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGC  243

Query  337  GGACGATTGAGTTTCTATTCGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGA  396
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  244  GGACGATTGAGTTTCTATTTGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGA  303

Query  397  GGACAGCAGCCTGAGTTCAAACTCAAATCTTTTGT  431
            |||||||| |||||||| |||||||||||||||||
Sbjct  304  GGACAGCAACCTGAGTTAAAACTCAAATCTTTTGT  338


> Ahg472357 jgi|Araly1|472357|fgenesh2_kg.1__2311__AT1G21190.1
Length=628

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 256/287 (89%), Gaps = 0/287 (0%)
 Strand=Plus/Plus

Query  114  ATGTCCGGCGAGGAAGAAGCCACCGTGAGGGAGCCACTAGATCTGATTAGGCTGAGTCTC  173
            ||||||| ||||||||| |||||||| || |||||||| ||||||||| |||||||| ||
Sbjct  38   ATGTCCGTCGAGGAAGACGCCACCGTTAGAGAGCCACTCGATCTGATTCGGCTGAGTATC  97

Query  174  GACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAACTTCGCGGCAAGCTTCACGCG  233
            || ||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| 
Sbjct  98   GAAGAGAGGATCTATGTCAAGCTCCGATCAGACCGTGAACTCCGCGGCAAGCTTCACGCT  157

Query  234  TTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAACTATCACTACAGTAGAA  293
            |||||||||||||||||||||||||||||||||||||||||   ||| || || ||||||
Sbjct  158  TTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAGGTTATTACGACTGTAGAA  217

Query  294  ATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGCGGACGATTGAGTTTCTA  353
            ||||| ||||||||||| ||||||||||||||||| || ||||| ||| ||  |||||||
Sbjct  218  ATCGACGACGAGACATACGAAGAGATTGTTCGGACAACTAAGCGAACGGTTCCGTTTCTA  277

Query  354  TTCGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGAGGAC  400
            |||||||||||||||||||||||||||||||| || ||  |||||||
Sbjct  278  TTCGTGAGAGGAGATGGAGTGATATTGGTGTCACCGCCTTTGAGGAC  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21596063374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5