BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76870.1
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927081 jgi|Araly1|927081|scaffold_202642.1 1360 0.0
Ahg472358 jgi|Araly1|472358|fgenesh2_kg.1__2312__AT1G21200.1 468 5e-131
> Ahg927081 jgi|Araly1|927081|scaffold_202642.1
Length=1250
Score = 1360 bits (736), Expect = 0.0
Identities = 1050/1191 (88%), Gaps = 64/1191 (5%)
Strand=Plus/Plus
Query 8 GAAATTGCTCGCAAGGACGCTTTGATTCTCAAG-T--TTCTTCTATGAGAGATCTTCGTC 64
|||| |||| || ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 62 GAAAATGCT--CATGGACGCTTTGATTCTCAAGTTGGTTCTTCTATGAGAGATCTTCGTC 119
Query 65 CAAATGCTATAAATCAGAATCAGAAACAACACCATCCAAATTCTCGACAAGACTCAGGCT 124
|||||||||| ||||||||| | || ||||||||||||||||||| ||||| ||||
Sbjct 120 CAAATGCTATGCATCAGAATC----A-AA-ACCATCCAAATTCTCGACATGACTCGGGCT 173
Query 125 TTAACAATACTATGGATACACGTCACAACAATGTCGACAGAGGAAAGAAATCAATGAGTG 184
| ||| |||||||||| ||| || |||||||||||||||||| |||||||| |||||||
Sbjct 174 GTGACATTACTATGGATGCACATCGCAACAATGTCGACAGAGGGAAGAAATCGATGAGTG 233
Query 185 AAGATGATGAACTATGTTTGTTAAGTAGTGATGGTCAAAACAAGTCCAAGGAA-AACTCT 243
|||| ||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct 234 AAGAGGATGAACTATGTTTG---AGTTGTGATGGTCAAAACAAGTCCAA-GAACAACTCT 289
Query 244 CCTTGGCAACGTGTGAAATGGATGGATAAGATGGTGAAGCTAATGATAACTGCTCTTTCT 303
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 290 CCTTGGCAACGTGTTAAATGGATGGATAAGATGGTGAAGCTGATGATAACTGCTCTTTCT 349
Query 304 TATATCGGTGAAGACTCT-G--GTT-C-----T-GAT----AA-GAAATTTGCAGTTTTG 348
||||||||||| |||||| | || | | | | || ||||||||| ||||||
Sbjct 350 TATATCGGTGAGGACTCTAGTACTTCCGAGGTTGGTTGCGGAAGGAAATTTGCGGTTTTG 409
Query 349 CAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCATGTT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 410 CAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCGTGTT 469
Query 409 TCGCCGCAGCAATGTGAAGATAAGTTTAATGATCTTAATAAGCGGTATAAGAAGCTTAAT 468
|| || |||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct 470 TCCCCCCAGCAATGCGAGGATAAGTTTAATGATCTTAATAAGAGGTATAAGAAGCTTAAT 529
Query 469 GAGATGCTTGGTAGAGGAACTTCTTGTGAGGTTGTTGAGAATCCTTCACTCTTGGATAAG 528
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 530 GAGATGCTTGGTAGGGGAACTTCTTGTGAGGTTGTTGAGAATCCTGCACTCTTGGATAAG 589
Query 529 ATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAGAATCATGAGCTCTAAACAT 588
|||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||
Sbjct 590 ATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAAAATCATGAGTTCCAAACAT 649
Query 589 CTTTTCTATGAAGAGATGTGTTCTTATCATAACGGAAACAGATTGCATTTGCCTCATGAC 648
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 650 CTTTTCTATGAGGAGATGTGTTCGTATCATAACGGAAACAGATTGCATTTGCCTCATGAC 709
Query 649 CCTGCGGTACAGAGATCTCTTCACTTGATTACGCTTGGAAGCCGtgatgatcatgataat 708
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 710 CCTGCAGTACAGAGATCCCTTCACTTGATTACACTCGGAAGCCGTGATGATCATGATAAT 769
Query 709 gatgaacatgggaaacaccaaaacgaagatcttgatgatgatgatgaCTATGAGGAAGAT 768
|||||||||||||||||||| || ||||||||||||||||| ||||| ||||||| |
Sbjct 770 GATGAACATGGGAAACACCAGAATGAAGATCTTGATGATGAGGATGAAGGTGAGGAACAC 829
Query 769 CAT--G----ATGGAGCTT-TA-AG---T----GA---CCGTCCTTTGAAGAGGTTAAGA 810
||| | |||| | || || || | || |||||| |||||||||||||||
Sbjct 830 CATTTGTCTCATGGGGATTGTAGAGGAGTCCATGATGACCGTCCCTTGAAGAGGTTAAGA 889
Query 811 CAAAGCCAGAGCCATGAAGATGTTGGTCATCCGAATAAGGGTTATGATGTCCCT-TGCTT 869
||||||| ||||||||||||| | | |||||||||||||||||||||| | ||
Sbjct 890 CAAAGCCTGAGCCATGAAGAT------C--C-GAATAAGGGTTATGATGTCCCTCTT-TT 939
Query 870 GCCTCGTTCCCAAGCTGATGTGAATCGAGGAATATCGCTAGATAGT-AGGAAAGCTGCTG 928
||||||||||||||||||||||| | ||||||| || ||||| ||| || |||| | |||
Sbjct 940 GCCTCGTTCCCAAGCTGATGTGAGTGGAGGAATGTCACTAGACAGTGAG-AAAGGTACTG 998
Query 929 GCTTACAGAGGCAGCAGATTGAGTCTAAGTCT-TTAGAGTTAGAAGGACGAAAGCTTCAG 987
||||||||||||||| |||||||||||||||| || |||||||||||||| | |||||||
Sbjct 999 GCTTACAGAGGCAGCGGATTGAGTCTAAGTCTCTT-GAGTTAGAAGGACGCAGGCTTCAG 1057
Query 988 ATTCAAGCGGAGATGATGGAACTGGAGAGACAACAATTCAAGTGGGAGGTGTTTAGTAAG 1047
|||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||
Sbjct 1058 ATTCAAGCGGAGTTGATGGAATTGGAGAGACAACAATTTAGGTGGGAGGTGTTTAGTAAG 1117
Query 1048 AGAAGAGAGCAGAAGCTTGCGAAAATGAGAATGGAAAACGAAAGGATGAAACTTGAGAAT 1107
| |||||| |||||||| | |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1118 AAAAGAGACCAGAAGCTCGAAAAAATGCGAATGGAGAACGAAAGGATGAAACTTGAGAAT 1177
Query 1108 GAAAGGATGAGTCTTGAACTGAAACGAATAGAGTTGGGTGCTAAATTGTGA 1158
|||||||||| |||||||||||||||||| || || |||||||||||||||
Sbjct 1178 GAAAGGATGACTCTTGAACTGAAACGAATTGAATTAGGTGCTAAATTGTGA 1228
> Ahg472358 jgi|Araly1|472358|fgenesh2_kg.1__2312__AT1G21200.1
Length=1696
Score = 468 bits (253), Expect = 5e-131
Identities = 441/529 (83%), Gaps = 23/529 (4%)
Strand=Plus/Plus
Query 241 TCTCCTTGGCAACGTGTGAAATGGA-TGGATAAGATGGTGAAGCTAATGATAACTGCTCT 299
||||| |||||||| |||||||||| | ||||||||||||||| | ||||||| ||| |
Sbjct 394 TCTCCATGGCAACGAGTGAAATGGACT-GATAAGATGGTGAAGTTGTTGATAACCGCTGT 452
Query 300 TTCTTATAT---CGGTGA--AGACTCTGG-T--T-CT-G-ATAA-GAAATTTGCAGTTTT 347
||||||||| || ||| |||| ||| | | | | | || ||| ||||| |||||
Sbjct 453 TTCTTATATAGGCGATGATTCGACTATGGATAGTGGTAGTAGAAGGAAGTTTGCTGTTTT 512
Query 348 GCAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCATGT 407
|||||||||||| ||||||| ||| ||||||||||| |||| ||| ||||||||||||||
Sbjct 513 GCAGAAGAAAGGGAAGTGGAAATCTGTTTCTAAAGTTATGGCTGAGAGAGGTTATCATGT 572
Query 408 TTCGCCGCAGCAATGTGAAGATAAGTTTAATGATCTT-AATAAGCGGTATAAGAAGCTTA 466
||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||
Sbjct 573 TTCGCCGCAGCAATGCGAGGATAAGTTTAATGAT-TTGAATAAGCGGTATAAGAAGCTTA 631
Query 467 ATGAGATGCTTGGTAGAGGAACTTCTTGTGAGGTTGTTGAGAATCCTTCACTCTTGGATA 526
| || ||||||||||| |||||||||||| | ||||||||||||||| | || ||||||
Sbjct 632 ACGATATGCTTGGTAGGGGAACTTCTTGTCAAGTTGTTGAGAATCCTGCGCTTTTGGATT 691
Query 527 AGATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAGAATCATGAGCTCTAAAC 586
||||| ||| |||||||| |||||||| ||||| ||||||| ||||||||| || ||||
Sbjct 692 CGATTGGTTATTTGAATGATAAAGAGAAGGATGATGTTAGGAAAATCATGAGTTCCAAAC 751
Query 587 ATCTTTTCTATGAAGAGATGTGTTCTTATCATAACGGAAACAGATTGCATTTGCCTCATG 646
||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||
Sbjct 752 ATCTTTTCTATGAAGAGATGTGTTCGTACCATAATGGGAACAGATTGCATTTGCCTCATG 811
Query 647 ACCCTGCGGTACAGAGATCTCTT-CACTTGATTACGCTTGGAAGCCGtgatgatcatgat 705
| | ||| | ||| | || || || ||| ||||| ||| | | ||||||||||||
Sbjct 812 ATCTTGCTTTGCAGCGTTCG-TTACAGTTGG---CGCTTAGAAACAGAGATGATCATGAT 867
Query 706 aatgatgaa-catgggaaacaccaaaacgaagatcttgatgatgatgat 753
|||||||| | | ||||||| |||| || |||||||||||||| |||
Sbjct 868 AATGATGATTC-TAGGAAACATCAAATGGAGGATCTTGATGATGAGGAT 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43193264961
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5