BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76890.2
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927083 jgi|Araly1|927083|scaffold_202644.1 2791 0.0
> Ahg927083 jgi|Araly1|927083|scaffold_202644.1
Length=1773
Score = 2791 bits (1511), Expect = 0.0
Identities = 1690/1777 (95%), Gaps = 10/1777 (1%)
Strand=Plus/Plus
Query 70 TTCAAGTTCGAGTCTT-AGCTATGTCTGGAAACTCAGAAGGACTGTTAGAGAGCTCAGGC 128
||||| |||||||||| || ||||||||||||||| ||||||||||||||| || ||
Sbjct 1 TTCAAATTCGAGTCTTAAG-TATGTCTGGAAACTCTTCAGGACTGTTAGAGAGTTCCGGT 59
Query 129 GGCGGCGTGGGAGGTTCC-GTCGAGGAGGAAAAAGATATGAAGATGGAGGAAACCGGTGA 187
|||||||||||||||||| || |||||||||| |||||||||| ||||||||||||| ||
Sbjct 60 GGCGGCGTGGGAGGTTCCGGT-GAGGAGGAAAGAGATATGAAGCTGGAGGAAACCGGCGA 118
Query 188 AGGAGCCGGCAGCGGAGGAAACCGGTGGCCAAGACCAGAGACTTTAGCTCTATTGAGAAT 247
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 119 GGGAGCCGGTGGCGGAGGAAACCGGTGGCCAAGACCGGAAACTTTAGCTCTATTGAGAAT 178
Query 248 ACGTTCAGAGATGGATAAAGCTTTTCGTGACTCTACTCTCAAAGCTCCCTTATGGGAAGA 307
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 ACGTTCGGAGATGGATAAAGCTTTTCGTGACTCTACTCTTAAAGCTCCCTTATGGGAAGA 238
Query 308 AATTTCCAGGAAAATGATGGAGCTTGGTTACAAGAGAAGTTCAAAGAAATGCAAGGAGAA 367
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 AATCTCCAGGAAAATGATGGAGCTTGGATACAAGAGAAGTTCAAAGAAATGCAAGGAGAA 298
Query 368 GTTCGAGAACGTGTACAAGTACCACAAACGTACCAAAGAAGGTCGTACCGGGAAATCCGA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTCGAGAACGTGTACAAGTACCACAAACGTACCAAAGAAGGTCGTACCGGGAAATCCGA 358
Query 428 AGGCAAAACTTACCGGTTTTTCGAAGAGTTAGAAGCTTTCGAGACTCTCAGTTCCTATCA 487
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGGCAAAACGTACCGTTTTTTTGAAGAGTTAGAAGCTTTCGAGACTCTCAGTTCCTATCA 418
Query 488 ACCTGAACCTGAGTCGCAACCCGCGAAATCTTCTGCAG-TGATCACGAACGCGCCCGCAA 546
||||||||||||||||||||| |||||||||||||||| | |||||| ||| |||||||
Sbjct 419 ACCTGAACCTGAGTCGCAACCAGCGAAATCTTCTGCAGCCG-TCACGACCGCCCCCGCAA 477
Query 547 CCTCTTCCTTGATACCATGGATTAGCTCTAGCAATCCATCAACCGAAAAAAGTTCTTCAC 606
|| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 478 CCACTTCCTTGATACCATGGATAAGCTCTAGCAATCCATCAATCGAAAAAATTTCTTCAC 537
Query 607 CGTTGAAACATCATCATCAGGTTAGTGTACAACCCATCACCACAAACCCTACCTTCCTCG 666
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 538 CGTTGAAACATCATCATCAGGTTAGTGCACAACCCATTACCACAAACCCTACCTTCCTCG 597
Query 667 CCAAGCAACCATCTTCCACGACGCCTTTTCCTTTTTATAGCAGCAACAATACTACTACTG 726
|||||||||||||||| ||||||||||| ||||| || || | |||||||||||||||||
Sbjct 598 CCAAGCAACCATCTTCTACGACGCCTTTCCCTTTCTACAGTAACAACAATACTACTACTG 657
Query 727 TTAGCCAGCCGCCAATTTCAAATGACTTGATGAACAATGTTTCATCGCTGAATCTTTTCT 786
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 TTAGCCAGCCGCCGATTTCAAATGACCTGATGAACAATGTTTCATCGCTGAATCTTTTCT 717
Query 787 CGAGCTCAACTTCTTCATCTACTGCATCTGACGAGGAAGAAGATCATCATCAGGTTAAGA 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 CGAGCTCAACTTCTTCATCTACTGCATCTGACGAGGAAGAAGATCATCATCAGGGAAAGA 777
Query 847 GCTCGAGAAAGAAGAGGAAGTATTGGAAAGGGTTGTTTACGAAGTTGACAAAAGAGTTAA 906
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 778 GATCGAGAAAGAAGAGGAAGTATTGGAAAGGACTGTTTACGAAGTTGACAAAAGAGTTGA 837
Query 907 TGGAGAAACAAGAGAAGATGCAAAAAAGGTTCTTGGAAACACTGGAGTATCGTGAGAAAG 966
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 838 TGGAGAAACAAGAGAAGATGCAAAAAAGGTTCTTGGAAACACTGGAGAATCGCGAGAAAG 897
Query 967 AGAGAATCTCAAGAGAAGAAGCTTGGAGGGTCCAAGAGATAGGGAGAATCAACAGAGAAC 1026
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 AGAGAATCACAAGAGAAGAAGCTTGGAGGGTCCAAGAGATAGCGAGAATCAACAGAGAAC 957
Query 1027 ACGAAACATTAATCCATGAGAGGTCCAATGCTGCAGCTAAAGACGCTGCAATCATATCCT 1086
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACGAAATTTTAATCCATGAGAGGTCCAATGCTGCAGCTAAAGACGCTGCAATCATATCCT 1017
Query 1087 TCTTACACAAAATCTCAGGAGGACAACCACAACAACCGCAACAACATAATCATAAACCAT 1146
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1018 TCTTACATAAAATCTCAGGAGGACAACCACAACAACCGCAACAGCATAATCATAAACCAT 1077
Query 1147 CACAAAGGAAACAATATCAAAGCGATCATTCAATAACGTTTGAGAGTAAAGAGCCGAGGG 1206
| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 CGCAAAGGAAACAATATCGAAGCGATCATTCAATAACGTTTGAGAGTAAAGAGCCAAGGC 1137
Query 1207 CGGTTCTATTGGATACAACAATAAAGATGGGGAATTACGATAACAATCATTCGGTGTCTC 1266
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 1138 CGGTACTATTGGATACAACAATGAAGATGGGGAATTACGATAACAACCATTCGGTATCTC 1197
Query 1267 CTAGTTCTTCAAGATGGCCTAAAACCGAGGTCGAGGCCTTGATAAGGATAAGAAAGAATC 1326
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1198 CTAGTTCTTCAAGATGGCCTAAAACAGAGGTCGAGGCCTTGATAAGGATAAGGAAGAATC 1257
Query 1327 TTGAAGCTAACTATCAAGAAAACGGTACTAAGGGACCATTATGGGAAGAGATCTCTGCAG 1386
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1258 TTGAAGCTAACTATCAAGAAAACGGTACTAAGGGGCCATTATGGGAAGAGATCTCTGCAG 1317
Query 1387 GGATGAGAAGATTGGGATACAATAGAAGCGCGAAACGCTGCAAAGAGAAGTGGGAAAACA 1446
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1318 GGATGAGAAGATTGGGATACAATAGAAGCGCGAAACGATGCAAAGAGAAGTGGGAAAACA 1377
Query 1447 TCAACAAGTACTTTAAGAAAGTCAAAGAAAGCAACAAGAAACGTCCCCTTGATTCCAAGA 1506
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TAAACAAGTACTTTAAGAAAGTCAAAGAAAGCAACAAGAAACGTCCCCTTGATTCCAAGA 1437
Query 1507 CTTGCCCTTATTTTCACCAGCTCGAAGCTTTGTACAACGAGAGGAACAAAAGTGGGGCAA 1566
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1438 CTTGCCCTTATTTTCACCAGCTCGAAGCTTTATACAACGAGAGGAACAAAAGTGGGACAA 1497
Query 1567 TGCCATTGCCATTGCCTCTAATGGTGACTCCACAGAGACAGTTGCTTCTCTCGCAAGAAA 1626
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1498 TGCCATTGCCATTGCCTCTAATGGTGACTCCTCAGAGACAGTTGCTTCTCTCACAAGAAA 1557
Query 1627 CCCAGACCGAGTTTGAGACTGATCAGAGGGAAAAAGTTGGTGATAaagaagat---gaag 1683
||||||| |||| |||||||||||| ||||| ||||||||||| ||||||||| ||||
Sbjct 1558 CCCAGACTGAGTCTGAGACTGATCAAAGGGACAAAGTTGGTGACAAAGAAGATGAAGAAG 1617
Query 1684 aagaaggagagagtgaagaagatgaatacgatgaagaagaagagggagaaggagacaatg 1743
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAGAAGGAGAGAGTGAGGAAGATGAATACGATGAAGAAGAAGAGGGAGAAGGAGACAATG 1677
Query 1744 agacaagtgagTTCGAGATTGTGTTGAACAAAACATCTTCACCTATGGACATTAACAATA 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 AGACAAGTGAGTTCGAGATTGTGTTGAACAAAACATCTTCACCTATGGACATTAACAATA 1737
Query 1804 ATCTTTTCACCTAAGTGGTTTTATAATCATTTTATTA 1840
||||||||||||||||||||| |||||||||||||||
Sbjct 1738 ATCTTTTCACCTAAGTGGTTT-ATAATCATTTTATTA 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74009346035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5