BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76900.1
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476847 jgi|Araly1|476847|fgenesh2_kg.2__1977__AT1G76900.2 2368 0.0
> Ahg476847 jgi|Araly1|476847|fgenesh2_kg.2__1977__AT1G76900.2
Length=1768
Score = 2368 bits (1282), Expect = 0.0
Identities = 1476/1570 (94%), Gaps = 12/1570 (1%)
Strand=Plus/Plus
Query 48 TGTAACCTTTAGAGAGAGAAAAACAAATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAG 107
||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 175 TGTAACCTTGAGAGAGAGAAAGA-AAATGTCGTTCCGCAGCATAGTTCGTGATGTGAGAG 233
Query 108 ATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTTAAGCAGCTTGAACAAAG 167
| ||||| |||||||| |||||||||||||||||||||||| |||||||| || ||||||
Sbjct 234 ACAGTATTGGAAGTCTGTCGAGGCGTAGTTTCGACTTTAAGCTAAGCAGCATGCACAAAG 293
Query 168 AAGGTGGTAAATCCCGTGGTTCGGTTCAAGATTCTCATGAGGAACAACTTGTAGTAACGA 227
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 294 AAGGTGGGAAATCTCGTGGTTCGGTTCAAGATTCTCACGAGGAACAACTTGTAGTAACGA 353
Query 228 TTCAAGAAACACCGTGGGCGAATCTACCTCCAGAGTTATTACGTGATGTGATCAAAAGAC 287
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 354 TTCAAGAAACCCCGTGGGCGAATCTACCTCCAGAGTTATTGCGCGATGTGATCAAAAGAC 413
Query 288 TTGAAGAGAGTGAAAGTGTGTGGCCTGCTCGTAGACATGTTGTTGCTTGTGCTTCTGTTT 347
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 414 TTGAAGAGAGCGAAAGTGTGTGGCCTGCTCGTAGACATGTGGTTGCTTGTGCTTCTGTTT 473
Query 348 GCAGGTCATGGAGAGATATGTGTAAAGAGATTGTTCAAAGTCCGGAGCTCTCAGGCAAAA 407
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 474 GCAGGTCATGGAGAGATATGTGCAAAGAGATTGTTCAAAGTCCCGAGCTCTCGGGCAAAA 533
Query 408 TCACATTTCCTGTTTCG-TTGAAACAGCCTGGACCAAGAGATGCAACAATGCAATGCTTT 466
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 534 TCACATTTCCTGTTTCGCTT-AAACAGCCGGGACCAAGAGATGCAACAATGCAATGCTTT 592
Query 467 ATCAAAAGGGATAAATCTAACTTGACTTATCATTTATATCTTTGTCTCAGTCCTGCTTTG 526
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 593 ATCAAGAGGGATAAATCTAACTTGACTTATCATTTATACCTTTGTCTCAGTCCTGCTTTG 652
Query 527 TTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAACGCATAAGAAGAACTACATACACC 586
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 653 TTGGTTGAGAATGGAAAGTTCCTTCTTTCCGCAAAACGCATAAGAAGAACTACCTACACC 712
Query 587 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAATACCTACATTGGC 646
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 713 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAGTACTTACATTGGC 772
Query 647 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTTATAATATACGATACACAACCAGCATAC 706
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 773 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTCGTAATATACGATACACAACCTGCATAC 832
Query 707 AACAGCAACATCGCTCGAGCGGTCCAACCGGTAGGTCTTAGCCGCAGATTCTACTCAAAG 766
|||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct 833 AACAGCAACACCGCTCGAGTGGTCCAACCGGTAGGCCTTAGCCGCAGATTTTACTCAAAG 892
Query 767 AGAGTCTCTCCCAAAGTACCTAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 826
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGAGTATCTCCCAAAGTACCGAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 952
Query 827 AACGTTCTTGGTACCCGTGGTCCGAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 886
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 953 AACGTTCTTGGTACTCGCGGTCCAAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 1012
Query 887 TCTTCCCTTGCGGAAGGCGGAACTGTGCCTGGACAGCCCGATATCATTGTCCCGCGCTCT 946
|||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1013 TCTTCCCTCGCTGAAGGCGGAACCGTGCCTGGACAGCCTGATATCATTGTCCCGCGCTCT 1072
Query 947 ATTCTCGACGAATCGTTCCGCAGCATTACCTCTTCGTCATCGAGAAAAATCACTTACGAT 1006
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 1073 ATTCTCGACGAATCGTTCCGCAGCATTACCTCCTCTTCGTCGAGAAAAATCACTTACGAT 1132
Query 1007 TACTCGAATGATTTTAGCAGTGCACGGTTTTCCGACATTCTTGGCCCGTTAAGCGAAGAC 1066
|||||||| |||||||| || |||||||||||||||||||| ||||||||| |||| |||
Sbjct 1133 TACTCGAACGATTTTAGTAGCGCACGGTTTTCCGACATTCTCGGCCCGTTAGGCGAGGAC 1192
Query 1067 CAAGAAGTGGTATTAGAAGAAGGGAAAGAGCGGAATTCGCCACCACTTGTGCTTAAGAAC 1126
|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1193 GAAGAAGCGGCATTAGAAGAAGGGAAAGAGCGGAATTTGCCACCACTTGTGCTTAAGAAC 1252
Query 1127 AAGCCGCCGAGGTGGCATGAACAGCTTCAGTGTTGGTGTTTAAACTTCAGGGGACGTGTA 1186
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1253 AAGCCGCCGAGGTGGCATGAACAGCTTCAATGCTGGTGTTTAAACTTCAGGGGACGCGTA 1312
Query 1187 ACAGTCGCATCAGTTAAGAACTTTCAGCTCATTGCAGCAAACCAACCACAGCCTCAGCCT 1246
|| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 1313 ACTGTCGCATCAGTTAAGAACTTTCAGCTGATTGCTGCAAACCAACCTCAGCCCCAGCCT 1372
Query 1247 CAGCCTCAACCGCAACCTC-AA--C--CC-CTAACTCAGCCGCAACCGTCTGGTCAGACC 1300
|| || ||||||||||||| || | || |||||||||||||||||||| |||||||||
Sbjct 1373 CAACCGCAACCGCAACCTCAAATTCAGCCTCTAACTCAGCCGCAACCGTCGGGTCAGACC 1432
Query 1301 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1492
Query 1361 GATTTCCGGTATCCGCTCTCTGCGTTTCAGGCTTTCGCTATCTGTTTGAGCAGTTTCGAC 1420
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1493 GATTTCCGGTATCCACTCTCAGCGTTTCAAGCTTTCGCTATCTGTTTGAGCAGTTTCGAT 1552
Query 1421 ACAAAACTTGCTTGCGAATAAGTCAAAAACTCAGCTTTGTATGTAATGTTATCAGATTTG 1480
|| ||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1553 ACGAAACTCGCGTGCGAATAAGTAAAAAAGTCAGCTTTGTATGTAATGTTTTCAGATTTG 1612
Query 1481 CTTTGGAGATTCTTGTTTTGTGGTGTTTTATTTT-CACCGAGAATCTCATAATTAGATTT 1539
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1613 CTTTGGAGATTCTTGTTTCGTGGTGTTTTATTTTTCACCGAGAATCTCAGAATTAGATTT 1672
Query 1540 GTTT-CAAGCTTTCATTGCTTATGCTGTTTATTGGTGCAACCAAAAAGTTTATTC-GAGT 1597
|||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 1673 GTTTTCAAGCTTTCATTGCTTATGTTGTTTATTGGTGCAACCAAAAAGTTAATTCTGAGT 1732
Query 1598 TTGGTTTTTC 1607
||||||||||
Sbjct 1733 TTGGTTTTTC 1742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60296857835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5