BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76920.1
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927086 jgi|Araly1|927086|scaffold_202647.1 1845 0.0
> Ahg927086 jgi|Araly1|927086|scaffold_202647.1
Length=1165
Score = 1845 bits (999), Expect = 0.0
Identities = 1113/1168 (95%), Gaps = 7/1168 (1%)
Strand=Plus/Plus
Query 214 GGAGAAGGAAGAGAAAAACCATGGAATCGTCTCCGGTAAACTGTCTTCCACCTGATTCTC 273
|||| |||||||| | ||||||||||||||||||| | ||| |||||||||| |||||||
Sbjct 2 GGAGGAGGAAGAG-ACAACCATGGAATCGTCTCCGATCAACCGTCTTCCACCGGATTCTC 60
Query 274 TCCACCAGATCTTCTCATCTCTTCCTATTCGTGATATCATGATCTGCAGATCCGTCTGCA 333
||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct 61 TCCACCATATCTTCTCATCTCTTCCTCTCCGTGATATCATGATCTGCAGATCCGTGTGCA 120
Query 334 AGTTCTTCAACCAGCTTTTGACCTCTCAGTGTTTCATAGAGATTATCTCAACTCGTCCGC 393
||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 121 AGTTCTTTAACCAGCTTTTGACCTCTCAATGCTTCATAGAGATCATCTCAACTCGTCCGC 180
Query 394 CGTTGAATCTACTCGCTCTCCGACCTCCTCATCACCACCACAGTCACCGTCACAGCGGAA 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTTGAATCTACTCGCTCTCCGACCTCCTCATCACCACCACAGTCACCGTCACAGCGGAA 240
Query 454 ACGGACACGCAACGAATATCCGACCGTACATCCATGTATATGATCCAGAGCAGAATCAAT 513
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 ACGGACACGCAACGAACATCCGACCGTACATCCATGTATACGATCCAGAGCAGAATCAAT 300
Query 514 GGTTCAGATTCAATCTCGATTTCCTCCCTTTCCGATCTCCTCAGCCTGTAGCTTCTTCAA 573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 GGTTCAGATTCAATCTCGATTTCCTCCCTTTCCGATCTCCTCAGCCTGTAGCTTCTTCTA 360
Query 574 GCGGATTGATCTATCTTTGGGGAGATTCGATTGATTTAGCTGAATCTAGCAAATCGCTCG 633
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 GCGGATTGATCTATCTTTGGGGAGATTCGATTGATTTAGCTGAGTCTAGCAAATCGCTCG 420
Query 634 TCGCTTGTAATCCGTTAACTCGGCAGTTCAAGGTTTTGCCTCAGCTTGGCTCAGCTTGGT 693
||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 421 TCGCTTGTAATCCATTGACTCGTCAGTTTAAGGTTTTGCCTCAGCTTGGCTCGGCTTGGT 480
Query 694 CACGCCATGGTACTGTTCTTGTTGATTCGGTGAATCGAGTCATGGTGCTCACTGAGCTCG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACGCCATGGTACTGTTCTTGTTGATTCGGTGAATCGAGTCATGGTGCTCACTGAGCTCG 540
Query 754 CTGCGTTGTATTACTCAGGTACTGTAGTTGCTAACCAATGGCTCAAATTCTCGTCGAATT 813
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 541 CTGCGTTGTATTACTCAGGTACTGTAGTTGCTAATCAATGGCTCAAATTCTCATCGAATT 600
Query 814 TACCATCGAAACCTAGAAGTCCTGTGTTAATGTCTAGCTCGGTTTTCGCATTGTGTGATG 873
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 TACCATCGAAACCTAGAAGTCCTGTGTTAATGTCGAGCTCGGTTTTCGCATTGTGTGATG 660
Query 874 TTGGATCTCCATGGAGAAGTCAATGGAAGCTTTTCTCATGTAAATTGACGAATCTCACAA 933
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGGATCTCCGTGGAGAAGCCAATGGAAGCTTTTCTCATGTAAATTGACGAATCTCACAA 720
Query 934 TCACTCATACCAATTGGGTTTGCTTGGAGAAACATGAATGGGGTGATATATTCGATATCA 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCACTCATACCAATTGGGTTTGCTTGGAGAAACATGAATGGGGTGATATATTCGATATCA 780
Query 994 TCAAACGACCGCGTTTATTGCGCGGTAACGGTGATTCTAAGCTTCTTATGATCGGTGGAT 1053
| |||||||| ||||| |||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 781 TTAAACGACCACGTTTGTTGCGCGGTAACGGAGACTCTAAGCTTCTGATGATCGGTGGTT 840
Query 1054 TGAAATCGACGTTTTCGTTGAACCCGGCTTGTTCAACGATTCTGATACTTAGGCTTG-AT 1112
|||||||||| |||||||||||||| |||||||| |||||||||||||||||| ||| ||
Sbjct 841 TGAAATCGACCTTTTCGTTGAACCCAGCTTGTTCGACGATTCTGATACTTAGG-TTGGAT 899
Query 1113 CTAGAAAGCTTGGAGTGGGAAGAAGCAGGTAGAATGCCGTTAGAGATGTACCGAGGTTTT 1172
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTAGAAAGCTTGGAATGGGAAGAAGCAGGTAGAATGCCGTTAGAGATGTACCGAGGTTTT 959
Query 1173 CAAGAATCGAGTAAGTTTAAAGTTTTTGGAGGTGGAGATAGGGTTTACTTCTCTGCTAAA 1232
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 CAAGAATCGAGTAAGTTCAAAGTTTTCGGAGGTGGAGATAGGGTTTACTTCTCTGCTAAA 1019
Query 1233 AGGATGGGGAAGCTTGCAATGTGGGATTGTTGGCAAGGTTGGAGATGGATTGAGGGCGTC 1292
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 1020 AGAATGGGGAAGCTTGCAATGTGGGATTGTTGGGAAGGTTGGAGATGGATTGATGGTGTC 1079
Query 1293 CCTGGTTATGCAGATGGATTGTGTCGAGGTTTTGTGTTTGATGCTAAGCTTACATTGATG 1352
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 CCTGGTTATGCAGATGGATTGTGTCGAGGTTTTGTGTTTGATGCTAAGCTTACAATGATG 1139
Query 1353 CCATGACAACAGaaa-aa-aaGGTCCGT 1378
||||||||| | ||| || ||||| |||
Sbjct 1140 CCATGACAA-A-AAAGAAGAAGGTGCGT 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60525399305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5