BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76940.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476852 jgi|Araly1|476852|fgenesh2_kg.2__1982__AT1G76940.1 1426 0.0
Ahg472365 jgi|Araly1|472365|fgenesh2_kg.1__2319__AT1G21320.1 276 3e-73
> Ahg476852 jgi|Araly1|476852|fgenesh2_kg.2__1982__AT1G76940.1
Length=1181
Score = 1426 bits (772), Expect = 0.0
Identities = 1040/1159 (90%), Gaps = 60/1159 (5%)
Strand=Plus/Plus
Query 1 TTTAAGACAAAATAATCAGAAACTTCGAAATCGAGAAGCAAGAAATTG---GAATCAATA 57
|||||||||||| ||||||||| ||||||||||||| |||| |||||| ||||||| |
Sbjct 1 TTTAAGACAAAAGAATCAGAAATTTCGAAATCGAGACGCAACAAATTGATTGAATCAAAA 60
Query 58 --GATTTGAGAAAACTTTTGATTTCGAGAGTGCTTCGGAGCAGAAGAACGAGCAAAGCTA 115
||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 61 GGGATTTGATAAAAATTTTGATTTCGAGAGTGCTTCGGAGCAGAAGAACAAGC-AAGCTA 119
Query 116 GGGTTTCCATCTA-TCAAATCCAGCTACAATCGAACCTATTCATCGAAATTAGGGttttt 174
|||||| | |||| |||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 120 GGGTTTTCTTCTATTCAAATCCAGATAGAATCGAAGCTATTCATCGAAATTAGGGTTTTT 179
Query 175 tttttGGTCCCTTAATTTTTCCCTTCTAGTAGCTTCTGATCCTTCGATTTCCATGGCGGA 234
|||||| |||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 180 TTTTTGCTCCCTTAA--TTT---TTC------CTTCTGATCCTTCGATTTCCATGGCGGA 228
Query 235 TGGGTACTGGAACCAGCAGCGACAGCAACATCATCCTCCTGGTGGTCCTATGAAACGTCC 294
||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 229 TGGGTACTGGAACCAGCAGCGACAGCAACATCATCTTCCTAGTGGTCCTCCGAAACGTCC 288
Query 295 CCGTTCCGATTTCGAAGCTCCATCATCAACAATGACTATAGGGCACGGTGGTGGTTATTA 354
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||
Sbjct 289 CCGTTCCGATTTCGAAGCTCCACCATCAACAATGGCTACAGGGCACGGTGGTGGTTACTA 348
Query 355 TCCGCGAGATGAGGATCTCGATGTTCCCGATACTAGAACTATCGGTTCAGCTTACGATCG 414
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 349 TCCGCGGGATGAGGATCTCGATGTTCCCGATACCAGAACTATCGGTTCAGCTTACGATCG 408
Query 415 CTATCTCCAGAGC--G-------------TGCAATCAGGAGAAGGTGGTTCTGTTTCCAT 459
||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 409 CTATCTCCAGAGCGTGCAAACATCTTCTTTGCAATCAGGAGAAGGTGGTTCTGTTTCCAT 468
Query 460 GGGAAGATCaggaggaggaggaggaggaggaggaggTAACGTTCAAACCATAGATGATTT 519
||||||| | ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 469 GGGAAGA-C--------CAGGAGGAGGAGGAGGAGGTAACGGTCAAACCATTGATGATTT 519
Query 520 TATGTTGAGACGTGGTGGAGTTCTCCCTTTAGACCATGGTCCAAATGGTCACACCATTGG 579
|||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 520 TATGATGAGACGTGGTGGAGTTCTCCCTCTAGACCATGGTCCAAATGGCCATGCCATTGG 579
Query 580 TTTTGATCCCCCAGAACCTGTTGGTAGGCGT---------A-A---CC--TACCTTCAGA 624
|||||||||||||||| |||||||||||||| | | || ||||| ||||
Sbjct 580 TTTTGATCCCCCAGAAGCTGTTGGTAGGCGTAACCGAGAGACACTTCCTTTACCTCCAGA 639
Query 625 TGCATCCAACACTTTATATGTTGAAGGACTTCCTTCTAATTGCTCTAGGAGGGAAGTAGC 684
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 640 TGCATCCAACACTTTATATGTTGAAGGACTTCCTTCAAATTGCTCAAGGAGGGAAGTAGC 699
Query 685 TCATATATTTCGACCTTTTGTAGGATACAGAGAAGTGAGACTTGTGACCAAAGACTCCAA 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 TCATATATTTCGACCTTTTGTAGGATACAGAGAAGTGAGACTTGTGACCAAAGACTCCAA 759
Query 745 ACATCGGAACGGAGATCCTATTGTTCTTTGCTTTGTTGATTTTACAAACCCTGCCTGTGC 804
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 760 ACATCGCAACGGAGATCCTATTGTTCTTTGTTTTGTTGATTTTACAAACCCTGCCTGTGC 819
Query 805 TGCGACTGCTCTGAGCGCCTTACAAGGCTATCGAATGGACGAAAACGAGTCTGATTCCAA 864
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 820 AGCGACTGCTCTGAGCGCCTTACAAGGCTATCGAATGGACGAAAACGAGTCTGATTCAAA 879
Query 865 GTTCCTGCGGCTCCAGTTTTCTAGGAAACCAGGTTCAAGACCAGGACAAAGAGGAAGAAG 924
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 880 GTTCCTGCGGCTCCAGTTTTCTAGAAAACCAGGTTCAAGACCAGGACAACGAGGAAGAAG 939
Query 925 GTGATGACTCAGGGACATTGTGGTACGTCAACCAAATGGTGACTTGTGGTATCTCCTTTG 984
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||
Sbjct 940 GTGATGACTCAGGGACATTGTGGTACGTCAACCAAATGGTAATTTGTTGTATCTCCTCTG 999
Query 985 AAGGAAATATACATCCTCCCTTTCCAAGTATAATCTCAATGAAATCGCACATTACATCAC 1044
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 1000 GCGGAAAGATACATCCTCCCTTTTCAAGTATAATCTCAATGAAATCGCACATGACATTAC 1059
Query 1045 TTAT-GT--CCTTGAAGCAACCTGAGTCGAGAGAAACAAAGATGCGCGGAGAGTGTAGAA 1101
|| | || |||||||||||| |||||| |||||||||||||| ||||||||||||| |
Sbjct 1060 TTGTTGTATCCTTGAAGCAACATGAGTCTAGAGAAACAAAGATTTGCGGAGAGTGTAGCA 1119
Query 1102 TATGAGGTTATAGAAACTG 1120
|||||| ||||||||||||
Sbjct 1120 TATGAGTTTATAGAAACTG 1138
Score = 84.2 bits (45), Expect = 2e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1139 TATATATACTGTTTTTGTTCCCTTCCTAGATTTCAAGCTCATATGTCATGTTAT 1192
|||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1128 TATAGAAACTGTTTTTGTTCCCTTCCTAGATTTCAAGCTCATATGTCGTGTTAT 1181
> Ahg472365 jgi|Araly1|472365|fgenesh2_kg.1__2319__AT1G21320.1
Length=1351
Score = 276 bits (149), Expect = 3e-73
Identities = 281/339 (83%), Gaps = 31/339 (9%)
Strand=Plus/Plus
Query 618 CTT-CAGATGCATCCAACACTTTATATGTTGAAGGACTTCCTTCTAATTGCTCTAGGAGG 676
||| |||||| |||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1016 CTTCCAGATGTATCCAACACTCTATATGTTGAAGGACTTCCTTCTAATTGCTCAAGAAGG 1075
Query 677 GAA---GT---A-GCT---CA-T------A--T--ATTTCGACCTTTTGTAGGATACAGA 715
||| || | ||| || | | | |||||| |||||||| ||||| |||
Sbjct 1076 GAAAATGTTTTAAGCTGTTCACTGTCCTTAACTGTATTTCGGCCTTTTGTGGGATATAGA 1135
Query 716 GAAGTGAGACTTGTGACCAAAGACTCCAAACATCGGAACGGAGATCCTATTGTTCTTTGC 775
||||| ||||||||||||||||| || |||||| ||| ||||||||||||||||||||
Sbjct 1136 GAAGTAAGACTTGTGACCAAAGATTCAAAACATAGGAGTGGAGATCCTATTGTTCTTTGT 1195
Query 776 TTTGTTGATTTT-ACAAACCCTGCCTGTGCTGCGACTGCTCTGAGCGCCTTACAAGGCTA 834
|||||||||||| | ||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 1196 TTTGTTGATTTTTA-AAACCCTGCCTGTGCAGCAACTGCTCTGAGCGCTTTGCAAGGCTA 1254
Query 835 TCGAATGGACGAAAACGAGTCTGATTCCAAG-TTCCTGCGGCTCCAGTTTTCTAGGAAAC 893
||||||||| ||| |||| || ||||||||| || |||||||||| ||||| || ||||
Sbjct 1255 TCGAATGGATGAAGACGAATCCGATTCCAAGATTT-TGCGGCTCCAATTTTCCAG-AAAC 1312
Query 894 C-AGGTTCAAGACCAGGACAAAG---AGGAAGAAGGTGA 928
| |||| |||||||||||||| | |||||||||||||
Sbjct 1313 CCAGGTCCAAGACCAGGACAACGTGGAGGAAGAAGGTGA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5