BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76952.1

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316610 jgi|Araly1|316610|fgenesh1_pm.C_scaffold_2001643           510    3e-144


> Ahg316610 jgi|Araly1|316610|fgenesh1_pm.C_scaffold_2001643
Length=330

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 317/336 (94%), Gaps = 6/336 (2%)
 Strand=Plus/Plus

Query  1    ATGGGCAATAAACGCATAAAAGCAATGATGATTCTAGTGGTAATGATCATGATGGTGTTC  60
            |||||||| ||||| ||| |||||||||||||||||||||||||  | ||||||||||||
Sbjct  1    ATGGGCAACAAACGTATAGAAGCAATGATGATTCTAGTGGTAAT--T-ATGATGGTGTTC  57

Query  61   TCATGGAGGATTTGTGAAGCCGATAGCTTAAGAAGATACTCATCATCGTCAAGACCACAA  120
            ||||||||||||||||||||||| |||||||||||| || ||||||| ||||||||||||
Sbjct  58   TCATGGAGGATTTGTGAAGCCGAGAGCTTAAGAAGACACACATCATCATCAAGACCACAA  117

Query  121  AGATTTTTCAAGGTGAGAAGACCTAACCCCCGTAATCATCATCATCAGAATCAAGGTTTC  180
            |||||||||||||||||||| ||||| ||||   ||||||||||||||||||||||||||
Sbjct  118  AGATTTTTCAAGGTGAGAAGGCCTAATCCCC---ATCATCATCATCAGAATCAAGGTTTC  174

Query  181  AATGGTGATGATTATCCTCCAGAAAGTTTCTCAGGATTTTTGCCCAAGACATTGCCAATT  240
            | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  175  ATTGATGATGATTATCCTCCAGAAAGTTTCTCAGGATTTTTGCCCAAGACATTGCCAATT  234

Query  241  CCACATTCTGCTCCTTCCAGGAAACACAACGTCTACGGTTTACAGAGAACCAACTCAAGG  300
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  235  CCACCTTCTGCGCCTTCCAGGAAACACAACGTCTACGGTTTACAGAGAACCAACTCAAGG  294

Query  301  TCGAGCTATTTTTGGACGCACGCCCACTTATCTTAA  336
            ||||||||||||||||||||||||||||||||||||
Sbjct  295  TCGAGCTATTTTTGGACGCACGCCCACTTATCTTAA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834569435


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5