BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76955.1

Length=608
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316611 jgi|Araly1|316611|fgenesh1_pm.C_scaffold_2001644           390    5e-108


> Ahg316611 jgi|Araly1|316611|fgenesh1_pm.C_scaffold_2001644
Length=234

 Score =  390 bits (211),  Expect = 5e-108
 Identities = 229/237 (97%), Gaps = 3/237 (1%)
 Strand=Plus/Plus

Query  10   ATGGCTAAAACGCCAAGTAGTTCATCGAAGCTCCTTGTGATGATGCTTTTCTCATTCTTG  69
            |||||||||||||| |  |||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    ATGGCTAAAACGCC-A--AGTTCATCGAAGCTCCTTATGATGATGCTTTTCTCATTCTTG  57

Query  70   GCTCTTTTCATAATCTCCCATGCTCGAGTTGTTTTTACTGATACGCCGTCTAATTCGTAC  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   GCTCTTTTCATAATCTCCCATGCTCGAGTTGTTTTTACTGATACGCCGTCTAATTCGTAC  117

Query  130  GCTCCACCTATTTACGCTCCTGTTCCTAAGGAATGTCTCAAGCCACCTTATTGCCGCGGT  189
            |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  118  GCTCCACCTATTTACGCTCCTGTTCCTAAGAAATGTCTCGAGCCACCTTATTGCCGCGGT  177

Query  190  CCTCCCGGAGAGTCTCAATTTGTTTACAATGAAAGAAACTATTATCAAATTAATTAA  246
            |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct  178  CCTCCCGGAGAGTCTCAATTTGGTTACAATGAAAGAAACTATTATCAAACTAATTAA  234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22225660611


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5