BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76965.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316612 jgi|Araly1|316612|fgenesh1_pm.C_scaffold_2001645 634 0.0
> Ahg316612 jgi|Araly1|316612|fgenesh1_pm.C_scaffold_2001645
Length=588
Score = 634 bits (343), Expect = 0.0
Identities = 500/572 (87%), Gaps = 25/572 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATCATTCCATTGATGCTCATTTCCGTTATCATACTCTTGACATCATTTCCGGCT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGATCATTCCATTGATGCTCATTTCCGTCATCATACTCTTGACATCATTTCCGGCT 60
Query 61 CCGATTAAAGTGTCCGGCAGGGGTGGAGGAGGCGGCTTTGTTGGTAGTGGCAACT-CTCC 119
||||||||||| ||||||||||| || || |||||||||||||||||||| || | ||
Sbjct 61 CCGATTAAAGTCTCCGGCAGGGGCGGCGGCGGCGGCTTTGTTGGTAGTGGGAA-TCCTGG 119
Query 120 TAGTATTGGAAGCGGCTATTTTGGTGGTGGTGGGAATCCTGGCACCGGCTATATGGGTGG 179
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 120 TGGTATTGGAAGCGGCTATTTTGGTGGTGGTGGGAATGCTGGCCCCGGCTATAGGGGTGG 179
Query 180 GGGTATCCCTAGCGGCGGCAGCATTAGGGATGGGAGTAATGTTGGCACCGGTTATAGGGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAATATCCCTAGCGGCGGCAGCATTAGGGATGGGAGTAATGTTGGCACCGGTTATAGGGG 239
Query 240 TGGGT-TTCAAGGAGGCAAGCCTTCAGGTGGTGGTGACCCCGGTGCGGCAATTGTGGTGT 298
|||| |||| || ||||||||||| ||||| |||||| ||||| ||||||||||||||
Sbjct 240 TGGGGCTTCA-GGCGGCAAGCCTTCGGGTGGCGGTGACACCGGTCCGGCAATTGTGGTGA 298
Query 299 TTCCTAAGAAGCCCGAGGAACCTGTGAAGGTGGTGCCAACGCCAATGCCACAAG-T---- 353
|||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 299 TTCCTAAGAAGCCCGATGAACCTGTGAAGGTGGTGCCCACGCCAATGCCACAATATAGGA 358
Query 354 T-----TGC-----GAA--CCGA----AAGTTAGACATTGCATCAATGTACATGTATACG 397
| ||| ||| || | |||||||||||||||||||| |||||||||||
Sbjct 359 TGCCAATGCCACAAGAATGCCTACCTGAAGTTAGACATTGCATCAATACACATGTATACG 418
Query 398 GACGCGCCGGGCAACCTCACCGAGGCGGAGCATGTTGTAACAAATTTAGGTACGCGAGAA 457
|| | || ||| ||||||||| |||||||||||||||||||||||||||| | | ||||
Sbjct 419 GAGGTGCTGGGGAACCTCACCAAGGCGGAGCATGTTGTAACAAATTTAGGCAATCAAGAA 478
Query 458 GATGTGTCTGTAAATTCCTTGTGTCTAATGATACTCACCTAAACAAACAATCTAATGGTG 517
||||| ||||||||||||||| |||| | ||| ||||||||| |||| |||||| ||||
Sbjct 479 GATGTATCTGTAAATTCCTTGAGTCTCAGGATGCTCACCTAACCAAAAAATCTAGTGGTA 538
Query 518 TACTTCGAGGTTGTCATTTTAAACGCAATTGT 549
|||||||||||||||||||||||||||| |||
Sbjct 539 TACTTCGAGGTTGTCATTTTAAACGCAACTGT 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5