BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76970.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476856 jgi|Araly1|476856|fgenesh2_kg.2__1986__AT1G76970.1 2495 0.0
Ahg472374 jgi|Araly1|472374|fgenesh2_kg.1__2328__AT1G21380.1 780 0.0
> Ahg476856 jgi|Araly1|476856|fgenesh2_kg.2__1986__AT1G76970.1
Length=1687
Score = 2495 bits (1351), Expect = 0.0
Identities = 1610/1727 (93%), Gaps = 50/1727 (3%)
Strand=Plus/Plus
Query 41 AGTCAGCAGTTGATTCTAGGACGGCGACTTGACTTGACACCTGAAAAATCCTTACCGTGT 100
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGTCAGCAGTTGATTCTAGGACGGCGACTTGACCTGACACCTGAAAAATCCTTACCGTGT 60
Query 101 TTGATAGTTTTTCGA-AAACCCTTCAAATTGTTTCAttttttttAAGTCTTGAGACTTTA 159
||||||||||||||| |||||||| |||||||||||| || ||||| |||||||| ||||
Sbjct 61 TTGATAGTTTTTCGATAAACCCTTTAAATTGTTTCATCTTCTTTAAATCTTGAGATTTTA 120
Query 160 AAAAATCCTCGCTTGCTCTTGTTTTAGGTCTCCTGAC--A-AGGAAAAATTTGGAAACTT 216
|||| ||| ||||||||||||||| ||| | || | | ||| ||||||||||||||
Sbjct 121 CAAAA-CCTGGCTTGCTCTTGTTTTTGGTTTTGTG-CTTATAGG--AAATTTGGAAACTT 176
Query 217 GTGGGAGTTGATTGATAAGAGTTGTTAAGATGGCAAATGATGCGGCTGCATGTGCAGAAA 276
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 177 GTGGGATTTGATTGATAAGAGTTGTTAAGATGGCAAATGACGCGGCTGCGTGTGCAGAAA 236
Query 277 GGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATC 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATA 296
Query 337 TTATCAACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAGGTGCTCAAGAAGCGGTTAG 396
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 TTATCAACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAAGTGCTCAAGAAGCGGTTAG 356
Query 397 GAAGTAAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCATTGGAAACTTTAAGTAAGA 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GAAGTAAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCATTGGAAACTTTAAGTAAGA 416
Query 457 ATTGTGGCGAAAACGTGTACCAGCTTATCATTGACCGTGGTCTATTGA-ATGACATGGTC 515
|||||||||||||||||||||||||| |||||||||||| | | |||| | |||||||||
Sbjct 417 ATTGTGGCGAAAACGTGTACCAGCTTTTCATTGACCGTGATATTTTGATA-GACATGGTC 475
Query 516 AAAATAGTGAAGAAAAAGCCGGAACTGAATGTGAGGGAAAAGATACTAACTTTGTTAGAC 575
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 476 AAACTAGTGAAGAAAAAGCCGGACCTGAATGTGAGGGAAAAGATACTAAGTTTGTTAGAC 535
Query 576 ACATGGCAAGAAGCCTTTGGTGGACGTGGAGGTCGATACCCACAATACTACAATGCCTAT 635
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACATGGCAAGAAGCTTTTGGTGGACGTGGAGGTCGATACCCACAATACTACAATGCCTAT 595
Query 636 AACGATCTCAGGTCTGCTGGAATTGAGTTTCCGCCTCGAACGGAAAGCAGTCTATCGTTC 695
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 AACGATCTCAGGTCTGCTGGAATTGAGTTTCCACCTCGAACGGAAAGCAGTCTATCGTTC 655
Query 696 TTTACTCCACCGCAGACTCAGCCAGATGAAGATGCTGCTATTCAGGCTTCGTTGCAAGGA 755
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 656 TTTACTCCACCGCAGACTCAGCCAGATGATGATGCTGCTATTCAGGCGTCGTTGCAAGGA 715
Query 756 GATGATGCTTCTAGCCTCAGCCTGGAAGAGATTCAAAGCGCTGAGGGATCAGTTGATGTT 815
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 GATGTTGCTTCTAGCCTCAGCTTGGAAGAGATTCAAAGCGCTGAGGGATCAGTTGATGTT 775
Query 816 TTGATGGACATGCTTGGAGCACATGATCCCGGGAATCCCGAGAGTTTAAAAGAAGAAGTT 875
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 776 TTGATAGACATGCTTGGAGCACTTGATCCCGGGAATCCCGAGAGTTTAAAAGAAGAAGTT 835
Query 876 ATAGTAGACTTGGTTGAGCAATGTCGTACTTATCAAAGACGTGTAATGACTCTTGTGAAC 935
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATAGTTGACTTAGTTGAGCAATGTCGTACTTATCAAAGACGTGTAATGACTCTTGTGAAC 895
Query 936 ACTACAACAGATGAGGAACTTCTGTGTCAGGGATTGGCATTAAACGATAATTTGCAGCAT 995
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 896 ACTACAACAGATGAGGAACTTCTGTGTCAGGGATTGGCATTAAATGATAATTTGCAGCGT 955
Query 996 GTTCTTCAGCGTCACGATGATATCGCAAATGTCGGCTCTGTTCCTTCAAATGGAAGGAAT 1055
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 956 GTTCTTCAGCGTCACGATGATATCGCAAAGGTCAGCTCTGTTCCTTCAAATGGAAGGAAT 1015
Query 1056 ACTAGAGCTCCTCCTCCAGTTCAGATTGTTGACATCAATCATGATGATGAAGATGACGAA 1115
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1016 ACTAGAGCTCCTCCTCCAGTTCAGATTGCCAACATCAATCATGATGTTGAAGATGACGAA 1075
Query 1116 TCAGATGATGAGTTTGCTCGGCTTGCTCACAGGTCTTCA--AC-ACCTACAAGGAGACCA 1172
||||||||||||||| |||||||||||||||| | || || |||||||| |||||||
Sbjct 1076 TCAGATGATGAGTTTACTCGGCTTGCTCACAGACCACCACCACCACCTACAATGAGACCA 1135
Query 1173 GTACATGGTAGTGATTCGGGTATGGTGGATATCCTTAGTGGGGACGTCTATAAACCTCAA 1232
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1136 GTACATGGTAGTGATTCGGGTATGGTGGATTTCCTTAGTGGGGATGTCTATAAACCTCAA 1195
Query 1233 GGCAACTCCTCCTCACAGGGAGTAAAGAAGcctcctcctcctcctccgcatacttcttct 1292
||| |||||||| |||||||||||||||||||||| | || | | |||||
Sbjct 1196 GGC---TCCTCCTCGCAGGGAGTAAAGAAGCCTCCTCAT--------GC-T--T-CTTCT 1240
Query 1293 tcctcttcttctcctGTTTTCGATGATGCAAGTCCACAACAAAGCAAATCCTCTGAGGTA 1352
|| || || |||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1241 TC-TC--CT------GTTTTCGATGATGCAAGTCCACAA-A--GCAAATCCTCTGAGGTA 1288
Query 1353 ATTAGGAATCTTCCACCTCCGCCTTCAAGGCACAACCAGAGGCAACAGTTCTTTGAGCAT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 ATTAGGAATCTTCCACCTCCGCCTTCAAGGCACAACCAGAGGCAACAGTTCTTTGAGCAT 1348
Query 1413 CACCACTCGAGTAGCGGCTCAGATTCCTCTTACGAGGGACAGACCCGGAACCTTTCTTTG 1472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1349 CACCACTCGAGTAGCGGCTCAGATTCCTCTTACGAGGGACTGACCCGGAACCTTTCTTTG 1408
Query 1473 ACAAGTAGTGAACCGCAGAAAGAAGAGAAACCAGAGGATTTGCTTTTCAAAGACCTGGTT 1532
|||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1409 ACAACTAGTGAACCGAAGAAAGAAGAGAAGCCAGAGGATTTGCTTTTCAAAGACCTGGTT 1468
Query 1533 GAGTTCGCCAAAACCAGGTCCTCCAAAGCCAACAATAATAATAGGTCGCTCTGAGTCTTT 1592
|||||||||||||||||||||||||| ||| ||| |||| ||||||| |||||||||
Sbjct 1469 GAGTTCGCCAAAACCAGGTCCTCCAA-GCC--CAACAATA---GGTCGCTTTGAGTCTTT 1522
Query 1593 TGTTTGTGGCTTTTTACCATTCAAGttttttttttCTTTTGGGTTTTCAGAGAGTGATGA 1652
|| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1523 TGCTTGTGGCTTT--ACCATTCAAGTTTTTTTTTTTTTTTTGGTTTTCAGAGAGTGATGA 1580
Query 1653 TGATATTAGAGTGTGCCTTATTATTTAGAGATAGTATCTGATAATACCAACAACCATATG 1712
|||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |
Sbjct 1581 TGATATTAGAGTGTGCCTTATTTTTTAGAGATAGTATCCGACAATACCAACAACCATACG 1640
Query 1713 TTTTACTTCTCTAACTTCACTC-CAA-GGACACAGCTTTAAAATACT 1757
|||||||| ||||||||||| | ||| ||||||||||||||||||||
Sbjct 1641 TTTTACTTGTCTAACTTCACACTCAAAGGACACAGCTTTAAAATACT 1687
> Ahg472374 jgi|Araly1|472374|fgenesh2_kg.1__2328__AT1G21380.1
Length=1922
Score = 780 bits (422), Expect = 0.0
Identities = 788/958 (82%), Gaps = 52/958 (5%)
Strand=Plus/Plus
Query 224 TTGATTG-ATAAGAGTTGTTAAGATGGCAAATGATGCGGCTGCATGTGCAGAAAGGGCTA 282
||||||| | ||| | | || |||||| ||| |||||||||| ||||| || |||||||
Sbjct 211 TTGATTGAAAAAGCGATCTTGCGATGGCGAATAATGCGGCTGCTTGTGCTGAGAGGGCTA 270
Query 283 CAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATC-TTATC 341
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||
Sbjct 271 CAAATGATATGCTGATTGGTCCAGATTGGGCTATCAACATTGAACTGTGTGA-CATTATC 329
Query 342 AACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAGGTGCTCAAGAAGCGGTTAGGAAGT 401
|||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 330 AACATGGAACCAAGTCAAGCAAAAGAAGCAGTGAAGGTGCTCAAGAAACGGTTAGGAAGT 389
Query 402 AAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCATTGGAAACTTTAAGTAAGAATTGT 461
||||| |||||||||||||||||||| |||||||| ||||||||| | ||||||||||||
Sbjct 390 AAAAATTCTAAAGTCCAGATTCTTGCTCTTTATGCTTTGGAAACTCTGAGTAAGAATTGT 449
Query 462 GGCGAAAACGTGTACCAGCTTATCATTGACCGTGGTCTATTGA-ATGACATGGTCAAAAT 520
||||| | ||||||||||| || ||||||||| | | || | ||| |||||||||||
Sbjct 450 GGCGAGAGTGTGTACCAGCTCATTGTTGACCGTGATAT-TTTACCTGATATGGTCAAAAT 508
Query 521 AGTGAAGAAAAAGCCGGAACTGAATGTGAGGGAAAAGATACTAACTTTGTTAGACACATG 580
||||||||||||||| || |||| ||||||||| |||||||| | ||| ||||| |||||
Sbjct 509 AGTGAAGAAAAAGCCTGACCTGACTGTGAGGGAGAAGATACTTAGTTTATTAGATACATG 568
Query 581 GCAAGAAGCCTTTGGTGGACGTGGAGGTCGATACCCACAATACTACAATGCCTATAACGA 640
||||||||| ||||||||| | || || ||| ||| || ||||||||||| ||||| ||
Sbjct 569 GCAAGAAGCTTTTGGTGGAAGCGGCGGAAGATTCCCTCAGTACTACAATGCTTATAATGA 628
Query 641 TCTCAGGTCTGCTGGAATTGAGTTTCCGCCTCGAACGGAAAGCAGTCTATCGTTCTTTAC 700
|||||||||||||||||||| || || |||||||| || |||||| || ||||||||||
Sbjct 629 ACTCAGGTCTGCTGGAATTGAATTCCCACCTCGAACCGAGAGCAGTGTACCGTTCTTTAC 688
Query 701 TCCA-C-C-G---CAG---A------CTCA-------GC--CAGATGAAGATGCTGCTAT 736
|||| | | | ||| | |||| || |||||||||||||||||||
Sbjct 689 TCCACCTCAGACTCAGCCTATTGTTGCTCAGGCCGTTGCATCAGATGAAGATGCTGCTAT 748
Query 737 TCAGGCTTCGTTGCAAGGAGATGATGCTTCTAGC-CTCAGCCTGGAAGAGATTCAAAGCG 795
|||||| || |||||| | |||||||||||| || |||||| ||||||||||||||||||
Sbjct 749 TCAGGCCTCTTTGCAAAGTGATGATGCTTCT-GCACTCAGCATGGAAGAGATTCAAAGCG 807
Query 796 CTGAGGGATCAGTTGATGTTTTGATGGACATGCTTGGAGCACATGATCCCGGGAATCCCG 855
|| ||||||| ||||||||||||| ||||||||||| || | |||||| | |||| |
Sbjct 808 CTCAGGGATCGGTTGATGTTTTGACAGACATGCTTGGGGCTCTTGATCCAAGCCATCCAG 867
Query 856 AGAGTTTAAAAGAAGAAGTTATAGTAGACTTGGTTGAGCAATGTCGTACTTATCAAAGAC 915
|| ||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 868 AGGGTTTAAAGGAAGAACTTATAGTTGACTTGGTCGAGCAATGTCGTACTTATCAAAGAC 927
Query 916 GTGTAATGACTCTTG-TGAACACTACAACAGATGAGGAACTTCTGTGTCA-GGGATTGGC 973
||||||||||| ||| |||| ||||| |||||||||||||| ||||||| ||| |||||
Sbjct 928 GTGTAATGACT-TTGGTGAATACTACTTCAGATGAGGAACTTATGTGTCAAGGG-TTGGC 985
Query 974 ATTAAACGATAATTTGCAGCATGTTCTTCAGCGTCACGATGATATCGCAAATGTCGGCTC 1033
| | || || ||| |||||| |||||||||| || ||||||| ||||| | |||
Sbjct 986 ACTGAATGACAATCTGCAGCGCGTTCTTCAGCACCATGATGATAAGGCAAAGGGAAACTC 1045
Query 1034 TGTTCCTTCAAATGGAAGGAATACTAGAGCTCCTCCTCCAGTTCAGATTGTT-GACATCA 1092
||||||| ||| | | || | || | |||| | | | ||||| | |||||
Sbjct 1046 TGTTCCTGCAAC---A-G-----CT----C-CCAC-TCCAATACCGCTTGTTAG-CATCA 1089
Query 1093 ATCATGATGATGAAGATGACGAATCAGATGATGAGTTTGCTCGGCTTGCTCACAGGTC 1150
||||||||||||| ||||| || ||||||||||| ||| ||| ||| ||||| |||||
Sbjct 1090 ATCATGATGATGATGATGATGAGTCAGATGATGATTTTTCTCAGCTAGCTCATAGGTC 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5