BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76980.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497423 jgi|Araly1|497423|fgenesh2_kg.402__1__AT1G76980.1 1031 0.0
Ahg476857 jgi|Araly1|476857|fgenesh2_kg.2__1987__AT1G76980.1 1031 0.0
> Ahg497423 jgi|Araly1|497423|fgenesh2_kg.402__1__AT1G76980.1
Length=741
Score = 1031 bits (558), Expect = 0.0
Identities = 664/712 (93%), Gaps = 19/712 (3%)
Strand=Plus/Plus
Query 98 ATGGCAAT-TTTCGATCTTTCGTCGAAATCATTCGATAGCCATTTGAATTTTCCGAGAAC 156
|||||||| ||| ||||||||||||||||| ||| ||| ||||||||||||||| ||| |
Sbjct 1 ATGGCAATCTTT-GATCTTTCGTCGAAATCGTTCAATACCCATTTGAATTTTCCCAGAGC 59
Query 157 TTTCGATGATCATTCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACGAGTCCACC 216
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TTTCGATGATCATCCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACAAGTCCACC 119
Query 217 GAAAAGTCCTGCTCATCTTCACAACAATTACCAGAATCTCTCACCTGTTACGAAGGCTCA 276
|||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 GAAAAGTCCTCCTCACCTGCACAACAATTACCAGAATCTCTCACCTGTTTCGAAGGCTCA 179
Query 277 AGTCATCGCTCGTGGTCAGCGTGAGCTTATGGATATGGTTAGTAAGATGCCCGAGTCGTG 336
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 AGTCATCGCTCGTGGTCAGCGTGAGCTCATGGATATGGTTAGTAAGATGCCCGAGTCGTG 239
Query 337 TTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACAC---GG-AG-G-AGG-A--GAA 387
||||||||||||||||||||||||||||||||||||||| || || | ||| | |||
Sbjct 240 TTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACACGGAGGAAGAGAAGGAAGGGAA 299
Query 388 GGTGTTCGATGAAATGCCTCAGAGAGaaaaaaaG-CCGAGGAAAGTCGTGAGGAAGACGA 446
||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 300 GGTGTTCGATGAAATGCCTCAGAGA-AATAAAAGACCGAGTAAAGTCGTGAGGAAGACGA 358
Query 447 AGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTTAATAATAGTGGGTTTCTTC 506
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 359 AGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTAAATAACAGTGGGTTTCTTC 418
Query 507 TGAAACTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACTAATAAGAAGAAAGATA 566
||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 419 TGAAATTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACGAA---GAAGAAAGATG 475
Query 567 ATGATGATGA-T--GATTCTTCTGTGACAAGTAAAAGGTCTTGGATTTCTTCTCCTAGAC 623
||||||| || | |||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 476 ATGATGAAGAATATGATTCTTCTGTGACAAGTAAAAAGTCTTGGATCTCTTCTCCAAGAC 535
Query 624 CTTCGATCTCTGATCTGTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGT 683
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTCGATCTCTGATGTTTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGT 595
Query 684 CAGAATCTCGTAGGAGTCAAAGTGTTGTCTCGAGGATCAACAGTGGGAGCTCAAAGAGCA 743
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 CAGAATCGCGTAGGAGTCAAAGTGTTGTCTCAAGGATCAACAGTGGGAGCTCAAAGAGCA 655
Query 744 GTGGTGGTAGTAGCAGTAGAAGCAATAGTGATCGAAGCCGAAACAGTCTAAG 795
|||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 656 GTGGTGGTAGTAGCAGTAGAAGTAATAGTGATCGAAGTCGAAACAGTCTAAG 707
> Ahg476857 jgi|Araly1|476857|fgenesh2_kg.2__1987__AT1G76980.1
Length=741
Score = 1031 bits (558), Expect = 0.0
Identities = 664/712 (93%), Gaps = 19/712 (3%)
Strand=Plus/Plus
Query 98 ATGGCAAT-TTTCGATCTTTCGTCGAAATCATTCGATAGCCATTTGAATTTTCCGAGAAC 156
|||||||| ||| ||||||||||||||||| ||| ||| ||||||||||||||| ||| |
Sbjct 1 ATGGCAATCTTT-GATCTTTCGTCGAAATCGTTCAATACCCATTTGAATTTTCCCAGAGC 59
Query 157 TTTCGATGATCATTCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACGAGTCCACC 216
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 TTTCGATGATCATCCAGATTCCGGCGTCTGTTCGCCTCCTCTGTGGAGAACAAGTCCACC 119
Query 217 GAAAAGTCCTGCTCATCTTCACAACAATTACCAGAATCTCTCACCTGTTACGAAGGCTCA 276
|||||||||| |||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 GAAAAGTCCTCCTCACCTGCACAACAATTACCAGAATCTCTCACCTGTTTCGAAGGCTCA 179
Query 277 AGTCATCGCTCGTGGTCAGCGTGAGCTTATGGATATGGTTAGTAAGATGCCCGAGTCGTG 336
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 AGTCATCGCTCGTGGTCAGCGTGAGCTCATGGATATGGTTAGTAAGATGCCCGAGTCGTG 239
Query 337 TTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACAC---GG-AG-G-AGG-A--GAA 387
||||||||||||||||||||||||||||||||||||||| || || | ||| | |||
Sbjct 240 TTACGAGCTTTCGTTGAAGGATCTCGTTGAGGTTAACACGGAGGAAGAGAAGGAAGGGAA 299
Query 388 GGTGTTCGATGAAATGCCTCAGAGAGaaaaaaaG-CCGAGGAAAGTCGTGAGGAAGACGA 446
||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||
Sbjct 300 GGTGTTCGATGAAATGCCTCAGAGA-AATAAAAGACCGAGTAAAGTCGTGAGGAAGACGA 358
Query 447 AGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTTAATAATAGTGGGTTTCTTC 506
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 359 AGAGTGATAAATGGGTGGATCCGATTCGAAACGGAGGTGTAAATAACAGTGGGTTTCTTC 418
Query 507 TGAAACTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACTAATAAGAAGAAAGATA 566
||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 419 TGAAATTGGTGTTTCCTGTTAGCTTGGGTGCTAAGAAAAAGACGAA---GAAGAAAGATG 475
Query 567 ATGATGATGA-T--GATTCTTCTGTGACAAGTAAAAGGTCTTGGATTTCTTCTCCTAGAC 623
||||||| || | |||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 476 ATGATGAAGAATATGATTCTTCTGTGACAAGTAAAAAGTCTTGGATCTCTTCTCCAAGAC 535
Query 624 CTTCGATCTCTGATCTGTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGT 683
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTCGATCTCTGATGTTTCGATGAAACGAGAGGATAAAGATTGGTGGAAGGATGGATTGT 595
Query 684 CAGAATCTCGTAGGAGTCAAAGTGTTGTCTCGAGGATCAACAGTGGGAGCTCAAAGAGCA 743
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 596 CAGAATCGCGTAGGAGTCAAAGTGTTGTCTCAAGGATCAACAGTGGGAGCTCAAAGAGCA 655
Query 744 GTGGTGGTAGTAGCAGTAGAAGCAATAGTGATCGAAGCCGAAACAGTCTAAG 795
|||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 656 GTGGTGGTAGTAGCAGTAGAAGTAATAGTGATCGAAGTCGAAACAGTCTAAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5